|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069784 ID=TCONS_00069784|Name=TCONS_00069784|organism=Clytia hemisphaerica|type=transcript|length=1355bp
TTTGAATCTAAAGCAGCAATCTGAAATGGCATGAATTTGGTTTAGCTTAA
CAGTGACCTGTATAATGAGAAACAACAAGCGCCACAGTCAAAACACCAAT
CCGACCAATTACCAAACTTCCCACCACCTGCACCACAAATACGCACCCAA
AGAAATCCAGAACTGTTTTCACCAAGAAGCAAATCAATGAATTGGAAAGT
GTATTTTACCAGAAGCGATATCTGACCATTAAAGATCGTGAAGAATTATC
GAGAAGATTGACGCTGACGGAAAATCAGGTGAAAGTCTGGTTCCAAAACC
GACGTAACAAATGGAAACGAGAAATGAGTTTCAAAGTGGAATTTGCCAAA
TTCAACATGGTGCCCAACCCCTTGAACATGGGTAGAGGTGTAGATGGTAC
TTTACCGAACAATCTTATGTTGCCCACAACAACTACGTCACCGACAGAAA
CATCGGATTTTCAAATGACATCACATCGTTATGAGGGATATGCATACCGT
AATGCATTCCAAGACAGTTATTATAATCCATATCCAAACGTGTTCAACAA
CCAGGACACACAAAACCAACATAATTATTCACCACTTTCAAACAGCAGTA
GTAATAACGAAGTCTCCTATCAAGACAACAACACTTCTATGCCTCAAACT
TCGGTTGCTTTGGAAACATACGACACCAACTCCATTGTTTACCCACCCCC
ACCACCACCGCCGCCAGCACAACCACCACAACAATCGGTAGCGCAAAACA
TGACGGACTACCAAAATCAGCAACATCATGCTATTTATTCACACTACAAC
AACTGCGACACTCAATATGACACAACAAAATACCAAGGAATGGATCAACA
AATCCCCTCCTCGTACGACATTCACAACTATTCACCAACCGGTCAAACAA
GCTCATACACATCACACAGATACACTGATGAAGCAACGCAACCACAAACC
GACCCCATCACATCTCAAATATCCCCTTTAGTAGCCAAATACACAGATGA
ACAACAACAAGCTTCACCTTACGAAGCGTGCAAGTACACAGAACACAACC
AACAAACTACTTCATACACGCCCAGACTCACGCCCATGGTTCCCACAACA
TCAGGGCGTGAAATGTACACTGATAATACAGGTGTTGTTTACACTACATT
AACTGATTACAGAAACAGTAGTGAAAACCAAACCTTAAACTTGCCCAATC
CACAATTTACATTCGGCAGTCACTATTGAAGGAAAGATGCTTTCATACAc
gtcaaaaaaaataatagttcttagtttttatgtattttaagtatttttgt
aaATTGTACATAGACATGAAtgagttttattttcatttttatcacgCATT
AATAC Run BLAST on NCBI transcript from alignment at scaffold_508:135988..138189+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069784 ID=TCONS_00069784|Name=TCONS_00069784|organism=Clytia hemisphaerica|type=transcript|length=2202bp|location=Sequence derived from alignment at scaffold_508:135988..138189+ (Clytia hemisphaerica)
TTTGAATCTAAAGCAGCAATCTGAAATGGCATGAATTTGGTTTAGCTTAA
CAGTGACCTGTATAATGAGGTATCAATTACAGCTATTAGCATGTCTAGCC
GATGTCTACAAGATTTGAGGGCGGTATAGAGTGACCGGAATTGTGAATTA
GTTGCAAATCTAATAAAAAATGGGAAACGTTTTAATGCTTGTGTGGTGGT
ATAGACTGTTGGGTTGAGAGAAAGGAAGCGAgagttaaaaacaaaacaac
caCGATGTTGGTTGCAGGAAACTCCAACATATTAACATTTTACCATAGAT
TATAGCTTTTTGTAAAGTGTCATTGATCATTGTGCTATTGTCCGTATGCT
CCAGTGGAAGATAAACTTTCAGTGGGAGGTTGTAGCAAACTAACCTGCCT
ATCCAGGGGCTATTGTTTGGTTTTTCGGAGACGACCGATGCCTGTAGGAC
TAGAGGGACAATCCTCAAACCCTCCTTTTGACTGATAAATTGTAATGCAA
TAAAAAGATCCCTATAAAGACACTTTATTCCTTCACAGAAACAACAAGCG
CCACAGTCAAAACACCAATCCGACCAATTACCAAACTTCCCACCACCTGC
ACCACAAATACGCACCCAAAGAAATCCAGAACTGTTTTCACCAAGAAGCA
AATCAATGAATTGGAAAGTGTATTTTACCAGAAGCGATATCTGACCATTA
AAGATCGTGAAGAATTATCGAGAAGATTGACGCTGACGGAAAATCAGGTA
TCAAAAATTTCCAATGACAGACAGTGTGCTGTGAAAGAAGTACACTTGTT
TCGACAGCAGATTTTTTAATCTTTGAAATGGGTACTGTTTTTAGTAAATC
CTattccaaatttcaaaatagcatAGAGGATTGTAGCCTGATTCCATTtt
ggtaccgttggaaagctttttatactctttctaaaGGCATGCGGTTTATA
CCCCTTCAAACAACGTGGTCAAGAGCTATGGCAAAAATCTTTGAGCTGGT
TTTCTGACCTATTTTTGACTCAGACACacgacttttgggggactgagGGT
TAAAATACACAGTTCTAACAGTTCAGTGTCCAATGATTAATACTAAGAAA
CTTGATTCCTTTTTCCATGTTACAGGTGAAAGTCTGGTTCCAAAACCGAC
GTAACAAATGGAAACGAGAAATGAGTTTCAAAGTGGAATTTGCCAAATTC
AACATGGTGCCCAACCCCTTGAACATGGGTAGAGGTGTAGATGGTACTTT
ACCGAACAATCTTATGTTGCCCACAACAACTACGTCACCGACAGAAACAT
CGGATTTTCAAATGACATCACATCGTTATGAGGGATATGCATACCGTAAT
GCATTCCAAGACAGTTATTATAATCCATATCCAAACGTGTTCAACAACCA
GGACACACAAAACCAACATAATTATTCACCACTTTCAAACAGCAGTAGTA
ATAACGAAGTCTCCTATCAAGACAACAACACTTCTATGCCTCAAACTTCG
GTTGCTTTGGAAACATACGACACCAACTCCATTGTTTACCCACCCCCACC
ACCACCGCCGCCAGCACAACCACCACAACAATCGGTAGCGCAAAACATGA
CGGACTACCAAAATCAGCAACATCATGCTATTTATTCACACTACAACAAC
TGCGACACTCAATATGACACAACAAAATACCAAGGAATGGATCAACAAAT
CCCCTCCTCGTACGACATTCACAACTATTCACCAACCGGTCAAACAAGCT
CATACACATCACACAGATACACTGATGAAGCAACGCAACCACAAACCGAC
CCCATCACATCTCAAATATCCCCTTTAGTAGCCAAATACACAGATGAACA
ACAACAAGCTTCACCTTACGAAGCGTGCAAGTACACAGAACACAACCAAC
AAACTACTTCATACACGCCCAGACTCACGCCCATGGTTCCCACAACATCA
GGGCGTGAAATGTACACTGATAATACAGGTGTTGTTTACACTACATTAAC
TGATTACAGAAACAGTAGTGAAAACCAAACCTTAAACTTGCCCAATCCAC
AATTTACATTCGGCAGTCACTATTGAAGGAAAGATGCTTTCATACAcgtc
aaaaaaaataatagttcttagtttttatgtattttaagtatttttgtaaA
TTGTACATAGACATGAAtgagttttattttcatttttatcacgCATTAAT
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00069784-exon-scaffold_508-1491911889:135988..136056 | TCONS_00069784-exon-scaffold_508-1491911889:135988..136056 | Clytia hemisphaerica | exon |
| TCONS_00069784-exon-scaffold_508-1510915933:135988..136056 | TCONS_00069784-exon-scaffold_508-1510915933:135988..136056 | Clytia hemisphaerica | exon |
| TCONS_00069784-exon-scaffold_508-1575043694:135988..136056 | TCONS_00069784-exon-scaffold_508-1575043694:135988..136056 | Clytia hemisphaerica | exon |
| TCONS_00069784-exon-scaffold_508-1491911889:136526..136734 | TCONS_00069784-exon-scaffold_508-1491911889:136526..136734 | Clytia hemisphaerica | exon |
| TCONS_00069784-exon-scaffold_508-1510915933:136526..136734 | TCONS_00069784-exon-scaffold_508-1510915933:136526..136734 | Clytia hemisphaerica | exon |
| TCONS_00069784-exon-scaffold_508-1575043694:136526..136734 | TCONS_00069784-exon-scaffold_508-1575043694:136526..136734 | Clytia hemisphaerica | exon |
| TCONS_00069784-exon-scaffold_508-1491911889:137113..138189 | TCONS_00069784-exon-scaffold_508-1491911889:137113..138189 | Clytia hemisphaerica | exon |
| TCONS_00069784-exon-scaffold_508-1510915933:137113..138189 | TCONS_00069784-exon-scaffold_508-1510915933:137113..138189 | Clytia hemisphaerica | exon |
| TCONS_00069784-exon-scaffold_508-1575043694:137113..138189 | TCONS_00069784-exon-scaffold_508-1575043694:137113..138189 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_508 | supercontig | scaffold_508:135988..138189 + |
Blast
BLAST of TCONS_00069784 vs. Swiss-Prot (Human)
Match: HMX2 (Homeobox protein HMX2 OS=Homo sapiens GN=HMX2 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.669e-18 Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 3
Query: 150 KKSRTVFTKKQINELESVFYQKRYLTIKDREELSRRLTLTENQVKVWFQNRRNKWKREMSFKVEFA 347
KK+RTVF++ Q+ +LES F KRYL+ +R L+ L LTE QVK WFQNRRNKWKR++S ++E A
Sbjct: 150 KKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215
The following BLAST results are available for this feature:
|
