TCONS_00069752 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069752
Unique NameTCONS_00069752
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2967

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069752 ID=TCONS_00069752|Name=TCONS_00069752|organism=Clytia hemisphaerica|type=transcript|length=2967bp
AGGATAGATGGTGAAAACACTGTATTTATTCTAGCAAGATGGACAACATG
AAGTTCTGAAAGAGATGGtatgCTGAATATCAGAACGAAGTGTTGGCGAA
GAAGAAACACGTGTTGACTTATTTCATGCATcgcgaagatgaaaaaagag
ATTACGATATTAAGgaACTAGATTTAGAAGTTGGTGAAGTAAGAAAGCCA
TCGGAGAAAGCGAAGAAAACGAAcaacaagaagaagaaagagCCTGAAAC
GCCACAAAAGGAGAAACGCAGACGAAACGCTAATCCGCTTGGTATTCCAA
TCCCAACAAATTTGCTAGGGAAGAGGGGAGCGgaggaaaaaaacaaagag
GAGGAAAAAGAGTATGGGCCGACTGTTACTTATTATTTGGATGGTTTCGC
ACAGGTCATAGATGTCAATGAACGTTTGAAGTTAGTTCTCGATGAAGTTT
GTATGGCCGAACCTAAAGCTTTTCGCGCCCGCTGTAATATAGCAATAACT
GACTTAAAGTTGAAGCGAGTAGCACCACAAACATTAAAAGATGAATTCGA
AGCTTGTCGGCAAGTCTTGCTGACCAGGCTACCAGAGAAAGCAGAATTAT
TGGAGAATATCCTGACAGAAACTGCCCGAAGTGCCGACGCTTTCATCGAA
CAAGTAGAGGACGTAATTGCATCACATAAAAAGAAGATGCAAGCAGGAGA
AGAACAACCACAAGAAACACAACAGCCAACAACACCTAGCACAATTGCTA
CCTCTGCTGCATCCTCGTTTGGCAGAACGTCACACCATCGGAAAGCCAGT
AAACCGTTACGTGTTGTGGAGGTAGGTAAAGTGAGACGTCCCATCAATCA
AGATCCGATCACCGTCGATGTCAGTGATGAATTCGATTCTGACGATTCGA
TGCCTGATACACCACGCCCACCGCCAATGTTGGGAAGTCAGCCGCCCACC
AAACGCCCACCCGTTACTGAAACAGACCAACTGAAGATATTTACATGGAT
TTTGCAGACGCTGCATATAGATACAGCAGGCGTAATGAGGTCATTACCAC
AGAAAGACCTAGCTAACTCCATCAAAGATCAGAACCCATACAATCAAGGA
AATACATTCCCAAAATGTCTCCCCCTGTCGCCTAATTCCTCCACGTTGCG
TGGTTTTCGAACTCTTTTGCTACACCGTAAACGTCTGAGTGAACAAGTCA
ACAAATCAACCACGCCTATCAATAAAGAAGCTCTCCAAGACACACCCATG
TACAATGCATTAAGCTCAAGATTCAAGAGTATGTTCGTATGGCCGGCCTT
TCTCGCCACCTTCATGCCGAGGAGAGCAGAAGAACTCCCATCCAAGAAGA
TATTGGATCAAACACCAACCAAACTTCCGCAGTTCAATTTCAATAAACGT
ATGAATATTCCAGGGCGTCGTGTACCGACGTCTCCTCAAACACGAATGCA
ACACCCGATGTATGGTTCCGCATCTCCGCAGCGTAATCATAGCNACGTAT
GAATATTCCAGGGCGTCGTGTACCGACGTCTCCTCAAACACGAATGCAAC
ACCCGATGTATGGTTCCGCCTCTCCGCAGCGTAATCATAGTCAGTTTCCA
GGACAACCACCCTATCCACCTGTGCACATGCACCAAATGGCTTACACTCG
TCAACGTCCAGGGCAAACTATTCTTGGCAACCCATCTCCTTTCAATTCCT
CTTCATCTACCACCATGCTGCGTCACACCACAACCAGTGGCTACGGTCAT
TCAAGAGCTGAAATAAATCTTTCGCCGCAACGGTTTCCGATAGCCCCTTC
ATACCCTTACAGAGCACCATACGCACCGGTGGGTAACCCTCATCAGCGAT
ACATGAGCCAAATGGTACCTTTCCCAATGAGGGCTCCATCTGGTCACGGG
ACGATGCAACGTCCTCCGACATCGAACACAAGTACTCAGCAACGTGAAAC
AACTTCTACACAAATACCTCAACAAGACGAGACTTCCACCAGTAATCCAT
CAGATAAAGGTAAAACACCTTTGGGTCGAGCAACACGTAAGAGATCGACC
AATAATGAAACTACTCAACCCTCTGCTACTTCTAAACCTAAGGCAAAAGT
CAAACATACTACTAAAATATGGTCACAACGCTCAGCTGAACTTTCAGACG
AAAAACTGTCCAAACTTGTTGATGACTATTTAAACGAACGTAAACTCAAC
ACGAAAGTTTTAAAAGTAGAACCGTCAGAGAAATCAACAGATGCACAGAC
CTCGACATCGCACCAACCAAAGACCTCTAAAGATGTGTTTATGCCACGCC
ACGTGCTCGATCCGCCGGCTGAGAAACGACAAATGTTAGATAATTCGGTA
ATTGCGTTAGAGACAGGTAAGGAGAAGGAtgataaagaaaaagacaaaga
agagAGACCTAAGAAAAGGAGAAAATCTCAATGAACTAATCAGAGAGTGA
TACATGAAAGTTGCTACAGATTTCCCCTTTTTGACACTGACATTTTAAAA
TACTGAATATAGCGAGTGTGCTGCTGACATAAATCATCTAAGGACGGGAT
GTGATACAAAACTGACAAAATATCTCTATATATTTTGTATACTGACAAAA
TTCAGAATTGATTGAAACTGGTCTCACATTGGATCTAAAGTACTGAAGAT
ACAGCAATTCGATTTGTTAAGCCTCATTGTACGTTAGGAATGCTTGTGTT
GTAAATATGAAATTATTGAGAACCTATTTTGTTCCGTTTTGAAAGCATGA
TGGTTCATggagaaattttaattttgaaaaaaccttACCCAAATTTTGTA
AACGATTTTTATCAAGTTTGTCtattttttgtataagattttTATTGTGT
CTAAATAGATCAAGATAGGGTAAATATACATatattttgtagattttaaa
tatgtttatgtattttatttcattatGTACAACGAAGTGTTTTGTTTTCA
GCAAAAGCAAACTGGCC
Run BLAST on NCBI

transcript from alignment at scaffold_507:78335..84226+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069752 ID=TCONS_00069752|Name=TCONS_00069752|organism=Clytia hemisphaerica|type=transcript|length=5892bp|location=Sequence derived from alignment at scaffold_507:78335..84226+ (Clytia hemisphaerica)
AGGATAGATGGTGAAAACACTGTATTTATTCTAGCAAGATGGACAACATG AAGTTCTGAAAGAGATGGGTAGGAATCTTCAACTtactcaagcaagaaaa agggTACCCTAAGATTTGCGCTGCATTTAGAATGGACGGGTTGAATCTAG ccctttctttatttttaagcgGCAGGCTTTTCAAAATCTAGCGAtaggtt ttactttcaatctggtttttgtgtgaaaaccacgcgagCATGCGTTTTGG ATGGAAAACAattggcttcatttcccattcaGGAGTCTCGNCGCCACAAA AGGAGAAACGCAGACGAAACGCTAATCCGCTTGGTATTCCAATCCCAACA AATTTGCTAGGGAAGAGGGGAGCGgaggaaaaaaacaaagagGAGGAAAA AGAGTATGGGCCGACTGTTACTTATTATTTGGATGGTTTCGCACAGGTCA TAGATGTCAATGAACGTTTGAAGTTAGTTCTCGATGAAGTTTGTATGGCC GAACCTAAAGCTTTTCGCGCCCGCTGTAATGTAAGTGTTCAGAAATAGAT CTTCCATGTTGATTTCACCCTTACTTATTCGANTTCTCCTTGAAAAATAC GTATTACTCTcaccattttctttttcagtatgCTGAATATCAGAACGAAG TGTTGGCGAAGAAGAAACACGTGTTGACTTATTTCATGCATcgcgaagat gaaaaaagagATTACGATATTAAGGTTTTtatttccttttccttttttgt GAAACATTAAGATGGTTCTTCATGGGCAGTCAGCAAAACTATATCGAAAT GGTACAAACTACAATCGCGGGAATTTTTTCTGCTccttttttatggaatt tttatgaattttccaCCGCTTTTTTGTGCTTCTTTCGGGAAGAATGTGCC AGAAGGAAAAATGTTACCCGTTGAACTTCATACCTACCCAGTGAATGTTA CCTTCCTGACTGATATTCCACCCCTTTTGAGAAGTTTGCCATCTTCCTGT TTAGCAATACTTGCAGTTTTAGTGCTGCGCACAGGAGATCGTGCGTTTCT TCGCAAGCAGTTTATTCACGCAAACTTTAAAGATATAGAGTACAGTACTC ATTATGCAACTCAAGCGTAGTAGACCTTACTTCCAAATTTCATTTGcttc ctttttctttattttaggaACTAGATTTAGAAGTTGGTGAAGTAAGAAAG GTAAAAAAGGTACTTTTCATTGCTACTTGAAACCCTCTTGGCTAACTATC GAGATAAATCTCGCATACTAAAACAGGGGAACTGAAATAACCGGGTTCGT TGAGAGCTATTTCAAAAACTACTATAGCCCAGGGGTGAGAAAAGCAAAGT TAATCATCCTCCATTTCGTTTTTCCATCGAAGCCATCGGAGAAAGCGAAG AAAACGAAcaacaagaagaagaaagagCCTGAAACGCCACAAAAGGAGAA ACGCAGACGAAACGCTAATCCGCTTGGTATTCCAATCCCAACAAATTTGC TAGGGAAGAGGGGAGCGgaggaaaaaaacaaagagGAGGAAAAAGAGTAT GGGCCGACTGTTACTTATTATTTGGATGGTTTCGCACAGGTCATAGATGT CAATGAACGTTTGAAGTTAGTTCTCGATGAAGTTTGTATGGCCGAACCTA AAGCTTTTCGCGCCCGCTGTAATGTAAGTGTTCAGAAATAGATCTTCCAT GTTGATTTCAACCTTACTTATTCGGTTTGCCCTAGTTTGTCCTGAAAATG TAATGCGAGATTCAGCTTCTTTTCAGAAAAGTAGGCTAAACTCTCtaatc aaattgttcttatgtaGTGGGTAAAGCCCTCAACATTTTTTCATTAGTGT TTGTTCTTTTGACGGTTAGCTATCACTAACACAGTCCTGTATTTCCATCT GAAACTAAGTGCGAATTTAATCTTCGTCAatactcaaaatcaaatttacc TCTACAATAGTTGTTCCGACCTCCTTTCTAGATAGCAATAACTGACTTAA AGTTGAAGCGAGTAGCACCACAAACATTAAAAGATGAATTCGAAGCTTGT CGGCAAGTCTTGCTGACCAGGCTACCAGAGAAAGCAGAATTATTGGAGAA GATCCTGACAGAAACTGTCCGAAGTGCCGACGCTTTCATCGAACAAGTAG AGGACGTCNTTCATTGCTACTTGAAACCCTCTTGGCTAACTATCGAGATA AATCTCGCATACTAAAACAGGGGAACTGAAATAACCGGGTTCGTTGAGAG CTATTTCAAAAACTACTATAGCCCAGGGGTGAGAAAAGCAAAGTTAATCA TCCTCCATTTCGTTTTTCCATCGAAGCCATCGGAGAAAACGAAGAAAACG AATAAcaacaagaagaagaaagagCCTGAAACGCCACAAAAGGAGAAACG CAGACGAAACGCTAATCCGCTTGGTATTCCAATCCCAACAAATTTGCTAG GGAAGAGAGGAGCGgaggaaaaaaacaaagagGAGGAAAAAGAGTATGGG CCGACTGTTACTTATTATTTGGATGGTTTCGCACAGGTCATAGATGTCAA TGAACGTTTGAAGTTAGTTCTCGATGAAGTTTGTATGGCCGAACCTAAAG CTTTTCGCGCCCGCTGTAATGTAAGTGTTCAGAAATAGATCTTCCATGTT GATTTCACCCTTACTTATTCGGTTTGCCCTAGTTTGTCCTGAAAATGTAA TGCGAGATTCAGCTTCTTTTCAGAAAAGTAGGCTAAACTCTCtaatcaaa ttgttcttatgtaGTGGGTAAAGCCCTCAACATTTTTTCATTAGTGTTTG TTCTTTTGACGGTTAGCTATCACTAACACAGTCCTGTATTTCCATCTGAA ACTAAGTGCGAATTTAATCTTCGTCAatattcaaaatcaaatttaccTCT ACAATAGTTGTTCCGACCTCCTTTCTAGATAGCAATAACTGACTTAAAGT TGAAGCGAGTAGCACCACAAACATTAAAAGATGAATTCGAAGCTTGTCGG CAAGTCTTGCTGACCAGGCTACCAGAGAAAGCAGAATTATTGGAGAATAT CCTGACAGAAACTGCCCGAAGTGCCGACGCTTTCATCGAACAAGTAGAGG ACGTAATTGCATCACATGTAAGTAATGCGATAAGTTCTCTGTGGTAGCTG CAGGTCACCTTTTTACAACATTTAAACCAATATCAACACCaacctgaatt tttttaataaatattctCATTAAAACTCATAGTTGTTTTAACTGGAGGTG AATGAGAAAATGAACAATCCGACAATTCTTTGTTTTCAACCTTCTTAGAA AAAGAAGATGCAAGCAGGAGAAGAACAACCACAAGAAACACAACAGCCAA CAACACCTAGCACAATTGCTACCTCTGCTGCATCCTCGTTTGGCAGAACG TCACACCATCGGAAAGCCAGTAAACCGTTACGTGTTGTGGAGGTAGGTAA AGTGAGACGTCCCATCAATCAAGATCCGATCACCGTCGATGTCAGTGATG AATTCGATTCTGACGATTCGATGCCTGATACACCACGCCCACCGCCAATG TTGGGAAGTCAGCCGCCCACCAAACGCCCACCCGTTACTGAAACAGACCA ACTGAAGATATTTACATGGATTTTGCAGGTTTGTTTCATGTTGTCGTTTG CACAATAACaggtttttttctgttttgaattggattattcttgaaatttg ttATCGTTCTGTTATTATTTGATTCGATTTCGAAGTTTCTTAACCTGGTA CATCGGATGATGAGTGTCTATGCACGAAACTGGTACTAGTGTCTTATGAT TTTTAGGAAGAAATTTGTTCTTGCTACTGAACACTTAGTTGATTTGATTC TTTAATTTTCATGTTTGATTTGTTACTTTTATTACcaatattttgtttat tcttcATGTGTTTTCACTACGTTCTTCCTTAGACGCTGCATATAGATACA GCAGGCGTAATGAGGTCATTACCACAGAAAGACCTAGCTAACTCCATCAA AGATCAGAACCCATACAATCAAGGAAATACATTCCCAAAATGTCTCCCCC TGTCGCCTAATTCCTCCACGTTGCGTGGTTTTCGAACTCTTTTGCTACAC CGTAAACGTCTGAGTGAACAAGTCAACAAATCAACCACGCCTATCAATAA AGAAGCTCTCCAAGACACACCCATGTACAATGCATTAAGCTCAAGATTCA AGAGTATGTTCGTATGGCCGGCCTTTCTCGCCACCTTCATGCCGAGGAGA GCAGAAGAACTCCCATCCAAGAAGATATTGGATCAAACACCAACCAAACT TCCGCAGTTCAATTTCAATAAACGTATGAATATTCCAGGGCGTCGTGTAC CGACGTCTCCTCAAACACGAATGCAACACCCGATGTATGGTTCCGCATCT CCGCAGCGTAATCATAGCNACGTATGAATATTCCAGGGCGTCGTGTACCG ACGTCTCCTCAAACACGAATGCAACACCCGATGTATGGTTCCGCCTCTCC GCAGCGTAATCATAGTCAGTTTCCAGGACAACCACCCTATCCACCTGTGC ACATGCACCAAATGGCTTACACTCGTCAACGTCCAGGGCAAACTATTCTT GGCAACCCATCTCCTTTCAATTCCTCTTCATCTACCACCATGCTGCGTCA CACCACAACCAGTGGCTACGGTCATTCAAGAGCTGAAATAAATCTTTCGC CGCAACGGTTTCCGATAGCCCCTTCATACCCTTACAGAGCACCATACGCA CCGGTGGGTAACCCTCATCAGCGATACATGAGCCAAATGGTACCTTTCCC AATGAGGGCTCCATCTGGTCACGGGACGATGCAACGTCCTCCGACATCGA ACACAAGTACTCAGCAACGTGAAACAACTTCTACACAAATACCTCAACAA GACGAGACTTCCACCAGTAATCCATCAGATAAAGGTAAAACACCTTTGGG TCGAGCAACACGTAAGAGATCGACCAATAATGAAACTACTCAACCCTCTG CTACTTCTAAACCTAAGGCAAAAGTCAAACATACTACTAAAATATGGTCA CAACGCTCAGCTGAACTTTCAGACGAAAAACTGTCCAAACTTGTTGATGA CTATTTAAACGAACGTAAACTCAACACGAAAGTTTTAAAAGTAGAACCGT CAGAGAAATCAACAGATGCACAGACCTCGACATCGCACCAACCAAAGACC TCTAAAGATGTGTTTATGCCACGCCACGTGCTCGATCCGCCGGCTGAGAA ACGACAAATGTTAGATAATTCGGTAATTGCGTTAGAGACAGGTAAGGAGA AGGAtgataaagaaaaagacaaagaagagAGACCTAAGAAAAGGAGAAAA TCTCAATGAACTAATCAGAGAGTGATACATGAAAGTTGCTACAGATTTCC CCTTTTTGACACTGACATTTTAAAATACTGAATATAGCGAGTGTGCTGCT GACATAAATCATCTAAGGACGGGATGTGATACAAAACTGACAAAATATCT CTATATATTTTGTATACTGACAAAATTCAGAATTGATTGAAACTGGTCTC ACATTGGATCTAAAGTACTGAAGATACAGCAATTCGATTTGTTAAGCCTC ATTGTACGTTAGGAATGCTTGTGTTGTAAATATGAAATTATTGAGAACCT ATTTTGTTCCGTTTTGAAAGCATGATGGTTCATggagaaattttaatttt gaaaaaaccttACCCAAATTTTGTAAACGATTTTTATCAAGTTTGTCtat tttttgtataagattttTATTGTGTCTAAATAGATCAAGATAGGGTAAAT ATACATatattttgtagattttaaatatgtttatgtattttatttcatta tGTACAACGAAGTGTTTTGTTTTCAGCAAAAGCAAACTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043433XLOC_043433Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069752-exon-scaffold_507-1491911889:78335..78402TCONS_00069752-exon-scaffold_507-1491911889:78335..78402Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1510915933:78335..78402TCONS_00069752-exon-scaffold_507-1510915933:78335..78402Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1575043694:78335..78402TCONS_00069752-exon-scaffold_507-1575043694:78335..78402Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1491911889:78963..79058TCONS_00069752-exon-scaffold_507-1491911889:78963..79058Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1510915933:78963..79058TCONS_00069752-exon-scaffold_507-1510915933:78963..79058Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1575043694:78963..79058TCONS_00069752-exon-scaffold_507-1575043694:78963..79058Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1491911889:79502..79534TCONS_00069752-exon-scaffold_507-1491911889:79502..79534Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1510915933:79502..79534TCONS_00069752-exon-scaffold_507-1510915933:79502..79534Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1575043694:79502..79534TCONS_00069752-exon-scaffold_507-1575043694:79502..79534Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1491911889:79717..80007TCONS_00069752-exon-scaffold_507-1491911889:79717..80007Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1510915933:79717..80007TCONS_00069752-exon-scaffold_507-1510915933:79717..80007Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1575043694:79717..80007TCONS_00069752-exon-scaffold_507-1575043694:79717..80007Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1491911889:81263..81451TCONS_00069752-exon-scaffold_507-1491911889:81263..81451Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1510915933:81263..81451TCONS_00069752-exon-scaffold_507-1510915933:81263..81451Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1575043694:81263..81451TCONS_00069752-exon-scaffold_507-1575043694:81263..81451Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1491911889:81633..81962TCONS_00069752-exon-scaffold_507-1491911889:81633..81962Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1510915933:81633..81962TCONS_00069752-exon-scaffold_507-1510915933:81633..81962Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1575043694:81633..81962TCONS_00069752-exon-scaffold_507-1575043694:81633..81962Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1491911889:82267..84226TCONS_00069752-exon-scaffold_507-1491911889:82267..84226Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1510915933:82267..84226TCONS_00069752-exon-scaffold_507-1510915933:82267..84226Clytia hemisphaericaexon
TCONS_00069752-exon-scaffold_507-1575043694:82267..84226TCONS_00069752-exon-scaffold_507-1575043694:82267..84226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_507supercontigscaffold_507:78335..84226 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30565 1.25674 0.000106029 1.32312 0.555458 1.1108 2.30827 2.31682 1.25922 3.27536 2.69603 0.984495 3.36032 3.17413 1.42083 1.0253 2.82042 0.0234588 0 0.293641 0.967473 0.724707 1.56456 1.30558 2.32788 2.80343 0.578985 0.577201 1.06734 0.968554
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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