TCONS_00069743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069743
Unique NameTCONS_00069743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1128

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069743 ID=TCONS_00069743|Name=TCONS_00069743|organism=Clytia hemisphaerica|type=transcript|length=1128bp
taaatccgctaGTGAATAAATCGTTTTCAAGTCTCGAACTATTCTGATTT
TTGGTGTACAAGACTTGTGATAATGTGGGGCGTTGGAAACATCTTTTTCA
CTATCGTTTACATCTGTATACTGTCGGTATCGTTCATTGGTAATCTTTTG
ATTATCGCAATCATCATCCGATCAAAGCAATTACGTCAACGAAATACAAA
TCTGTTGATTTTCAATCTGGCAATCTCAGATCTACTTGTAGCCACCATCA
ATGTACCGTATAATATCAGTGTCCTGATTGGCGCAACCAAGAATATCTTT
ACCTGCAAACTGGCTGTTTTCGTGGCTGTATTATGTTTCACAGTGGCACA
GTTCAACCTTTTGTTAATCACAGTCGATAGATATTTGGGAATCAACCATC
CTTTGAAATACAGGGCACGAATAACCACAAGAAAAACAATATCAGCTATT
GTTATAGCCTGGATTATTTCTAATGTTGTAGCCGCATTCCCGGTCATACA
TCGACCAGATCCTAGCAGCCTTGTCAAACGAAACACAAAAATATGCTTGT
TAGCTGATCTCCTTGCACCAATCACGTTATCGTGTTTCTTAATGGTAGTC
TTCTATCTTCCCGTATTGATAACCATTGTTTTATACCTACGAATCTTAAC
AACAATCGCTAGAGCCAGAGATAGCAACATTCGTACTTCTTCAACATGTA
GAAATCAATCAAGCTCATCTAAGAAAGGACtagcaaaaactgaaaataat
ggACAACCACCTCACAGTAAATGTAAACGAGTTGCAAATATCTGTAAACA
TGAGATTAAATCGGCCAAAATTGTCCTAGTACAAATTGCTCTTTATGTAG
GCTGCATGCTACCTATAACGATTTACGACATGTATGTTTCGTTTTCACAA
GACTTGACTAATAGTGACGTGATAACACAAATGCTGCTTCTATTGGCTTA
TTGTAGCTCAGCTATTAATCCCTTTTTGTATGGAATAAGAGATCCAAAAT
ATAGAAAAGCTATCAAAGACTTGTTTCATTGTATGTAACAAGACAACAGG
AAAAATCAAATGTCACGTTTGCCTGGAAAATACACTATTTTTTTTACCTA
AGAACAAGTTTACAAGTTGAGcttcggc
Run BLAST on NCBI

protein sequence of TCONS_00069743-protein

>TCONS_00069743-protein ID=TCONS_00069743-protein|Name=TCONS_00069743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MWGVGNIFFTIVYICILSVSFIGNLLIIAIIIRSKQLRQRNTNLLIFNLA
ISDLLVATINVPYNISVLIGATKNIFTCKLAVFVAVLCFTVAQFNLLLIT
VDRYLGINHPLKYRARITTRKTISAIVIAWIISNVVAAFPVIHRPDPSSL
VKRNTKICLLADLLAPITLSCFLMVVFYLPVLITIVLYLRILTTIARARD
SNIRTSSTCRNQSSSSKKGLAKTENNGQPPHSKCKRVANICKHEIKSAKI
VLVQIALYVGCMLPITIYDMYVSFSQDLTNSDVITQMLLLLAYCSSAINP
FLYGIRDPKYRKAIKDLFHCM
Run BLAST on NCBI

transcript from alignment at scaffold_506:366230..367357

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069743 ID=TCONS_00069743|Name=TCONS_00069743|organism=Clytia hemisphaerica|type=transcript|length=1128bp|location=Sequence derived from alignment at scaffold_506:366230..367357 (Clytia hemisphaerica)
gccgaagCTCAACTTGTAAACTTGTTCTTAGGTAAAAAAAATAGTGTATT TTCCAGGCAAACGTGACATTTGATTTTTCCTGTTGTCTTGTTACATACAA TGAAACAAGTCTTTGATAGCTTTTCTATATTTTGGATCTCTTATTCCATA CAAAAAGGGATTAATAGCTGAGCTACAATAAGCCAATAGAAGCAGCATTT GTGTTATCACGTCACTATTAGTCAAGTCTTGTGAAAACGAAACATACATG TCGTAAATCGTTATAGGTAGCATGCAGCCTACATAAAGAGCAATTTGTAC TAGGACAATTTTGGCCGATTTAATCTCATGTTTACAGATATTTGCAACTC GTTTACATTTACTGTGAGGTGGTTGTccattattttcagtttttgctaGT CCTTTCTTAGATGAGCTTGATTGATTTCTACATGTTGAAGAAGTACGAAT GTTGCTATCTCTGGCTCTAGCGATTGTTGTTAAGATTCGTAGGTATAAAA CAATGGTTATCAATACGGGAAGATAGAAGACTACCATTAAGAAACACGAT AACGTGATTGGTGCAAGGAGATCAGCTAACAAGCATATTTTTGTGTTTCG TTTGACAAGGCTGCTAGGATCTGGTCGATGTATGACCGGGAATGCGGCTA CAACATTAGAAATAATCCAGGCTATAACAATAGCTGATATTGTTTTTCTT GTGGTTATTCGTGCCCTGTATTTCAAAGGATGGTTGATTCCCAAATATCT ATCGACTGTGATTAACAAAAGGTTGAACTGTGCCACTGTGAAACATAATA CAGCCACGAAAACAGCCAGTTTGCAGGTAAAGATATTCTTGGTTGCGCCA ATCAGGACACTGATATTATACGGTACATTGATGGTGGCTACAAGTAGATC TGAGATTGCCAGATTGAAAATCAACAGATTTGTATTTCGTTGACGTAATT GCTTTGATCGGATGATGATTGCGATAATCAAAAGATTACCAATGAACGAT ACCGACAGTATACAGATGTAAACGATAGTGAAAAAGATGTTTCCAACGCC CCACATTATCACAAGTCTTGTACACCAAAAATCAGAATAGTTCGAGACTT GAAAACGATTTATTCACtagcggattta

Coding sequence (CDS) from alignment at scaffold_506:366230..367357

>TCONS_00069743 ID=TCONS_00069743|Name=TCONS_00069743|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_506:366230..367357 (Clytia hemisphaerica)
TTACATACAATGAAACAAGTCTTTGATAGCTTTTCTATATTTTGGATCTC
TTATTCCATACAAAAAGGGATTAATAGCTGAGCTACAATAAGCCAATAGA
AGCAGCATTTGTGTTATCACGTCACTATTAGTCAAGTCTTGTGAAAACGA
AACATACATGTCGTAAATCGTTATAGGTAGCATGCAGCCTACATAAAGAG
CAATTTGTACTAGGACAATTTTGGCCGATTTAATCTCATGTTTACAGATA
TTTGCAACTCGTTTACATTTACTGTGAGGTGGTTGTccattattttcagt
ttttgctaGTCCTTTCTTAGATGAGCTTGATTGATTTCTACATGTTGAAG
AAGTACGAATGTTGCTATCTCTGGCTCTAGCGATTGTTGTTAAGATTCGT
AGGTATAAAACAATGGTTATCAATACGGGAAGATAGAAGACTACCATTAA
GAAACACGATAACGTGATTGGTGCAAGGAGATCAGCTAACAAGCATATTT
TTGTGTTTCGTTTGACAAGGCTGCTAGGATCTGGTCGATGTATGACCGGG
AATGCGGCTACAACATTAGAAATAATCCAGGCTATAACAATAGCTGATAT
TGTTTTTCTTGTGGTTATTCGTGCCCTGTATTTCAAAGGATGGTTGATTC
CCAAATATCTATCGACTGTGATTAACAAAAGGTTGAACTGTGCCACTGTG
AAACATAATACAGCCACGAAAACAGCCAGTTTGCAGGTAAAGATATTCTT
GGTTGCGCCAATCAGGACACTGATATTATACGGTACATTGATGGTGGCTA
CAAGTAGATCTGAGATTGCCAGATTGAAAATCAACAGATTTGTATTTCGT
TGACGTAATTGCTTTGATCGGATGATGATTGCGATAATCAAAAGATTACC
AATGAACGATACCGACAGTATACAGATGTAAACGATAGTGAAAAAGATGT
TTCCAACGCCCCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043428XLOC_043428Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069743-proteinTCONS_00069743-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069743-exon-scaffold_506-1491911889:366230..367357TCONS_00069743-exon-scaffold_506-1491911889:366230..367357Clytia hemisphaericaexon
TCONS_00069743-exon-scaffold_506-1510915933:366230..367357TCONS_00069743-exon-scaffold_506-1510915933:366230..367357Clytia hemisphaericaexon
TCONS_00069743-exon-scaffold_506-1575043694:366230..367357TCONS_00069743-exon-scaffold_506-1575043694:366230..367357Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:366230..367357 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115814 0.0376457 0 0.0855273 0.104121 0.082278 0 0.0464653 0 0.0402955 0 0.0257105 0.282423 0.479943 0.0657631 0 0.231843 0.29704 1.35424 2.10421 0.447903 0.600796 0.221317 0.120726 0.331585 0.73983 0.0529347 0.0564934 0 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
BLAST of TCONS_00069743 vs. Swiss-Prot (Human)
Match: DRD1 (D(1A) dopamine receptor OS=Homo sapiens GN=DRD1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.703e-23
Identity = 91/323 (28.17%), Postives = 146/323 (45.20%), Query Frame = 1
Query:  139 GNLLXXXXXXRSKQLRQRNTNLLIFNLAISDLLVATINVPYN-ISVLIGATKNIFTCKLAVFVAVLCFTVAQFNLLLITVDRYLGINHPLKYRARITTRKTISAIVIAWIISNVVAAFPV---IHRPDPSSLVKRNTKICLLADLLAPITLSC-----------FLMVVFYLPVLITIVLYLRILTTIARARDSNIXXXXXXXXXXXXXKKGLAKTENNGQP-----PHSKCKRVANICKHEIKSAKIVLVQIALYVGCMLPITIYDMYVSF-----SQDLTNSDVITQMLLLLAYCSSAINPFLYGIRDPKYRKAIKDLFHC 1032
            GN L+ A +IR + LR + TN  + +LA+SDLLVA + +P+  ++ + G       C + V   ++C T +  NL +I+VDRY  I+ P +Y  ++T +     I +AW +S +++  PV    H+  P+S    N      A  LA    +C             ++ FY+PV I IV Y RI   IA+ +   I         +    K    T  NG+P     P S  K      K E K  K + V + ++V C LP  I +  + F     +Q          + +   + +S++NP +Y   +  +RKA   L  C
Sbjct:   40 GNTLVCAAVIRFRHLRSKVTNFFVISLAVSDLLVAVLVMPWKAVAEIAGFWPFGSFCNIWVAFDIMCSTASILNLCVISVDRYWAISSPFRYERKMTPKAAFILISVAWTLSVLISFIPVQLSWHKAKPTSPSDGN------ATSLAETIDNCDSSLSRTYAISSSVISFYIPVAIMIVTYTRIY-RIAQKQIRRIAALERAAVHA----KNCQTTTGNGKPVECSQPESSFKMSF---KRETKVLKTLSVIMGVFVCCWLPFFILNCILPFCGSGETQPFCIDSNTFDVFVWFGWANSSLNPIIYAF-NADFRKAFSTLLGC 347          
The following BLAST results are available for this feature:
BLAST of TCONS_00069743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRD11.703e-2328.17D(1A) dopamine receptor OS=Homo sapiens GN=DRD1 PE... [more]
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