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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00069718 ID=TCONS_00069718|Name=TCONS_00069718|organism=Clytia hemisphaerica|type=transcript|length=1172bp caaaaattagaaaaaatgatCCATTGTGGCAGATTCACTACAAGCCAAAT CGCAAAAATATTAGGTATTTTCCAAATCATATGTGCTATCATTATCACAG CTGTTGGTATAGGAATCGTTATTAAATTTCGTGAGGTTGACCACACTCTA CAAAGTGATAAATCAGTAGCCGATACTTATATTGATAATCCATGGACAAC TCAATATGGTGCAGCAATATGGATGGGTTTAATTATGGCAATAGCAGGAG CTTTTGGATGTTTTGCTGATATTAAACCACACAAGTCTAAATATatGTAC GGTACCATGTTTCTAAACATTGTCGTCGTTTTAGCCGCCATTTTACTTCT CATCTTTTCCCATCAAACAATCACGTGGTTTGACACGTGCCAATATCAAT ATCACGTGTTTCATACTCATGTTATGCAAGTAAGAGACTGTTCTGAAGAC GATAAATCAACTGGCAATACAATGTATTGGACTGTCTTTGTCGTTAGTTT GTTGGTGATCCCGATTACAATTATGATGCTGGTTTTATTGGGATTCTCAA ATTCATCATTGTTGGAAGAAATGTGCCAAGGAACGTGTTTCAGGAAAATG GTTTATAAAAGTAAAGGACCAGATAGTCAGGTCAGCTACAAGACAAAGAA CACGCACGAGTTCAATAAAGAAATGCATGTCAATAATGGTGGGGcacaaa aaaaagaacagtcaaTGAATTACAGTCAACCTGCAATTTATTGTTGATAT TACTAATGGTAAATGCACTTCGAAAAGCTTGGAAAAAGCCGGGACACGCA CATACTGTACCTCGTTTACCTTAATTGCTCCTCCCCCGATCGATATGCAC GATCATAATTTGCGTAGGTTTATCGTGTTTCAAGATCTGAGAGAATTTTA TACAAGGTTGAGACTGGACTTGCCGTTGCTTGATCAAGCTGTCAACATGA AGAATGTCGTTAATACTAAATagacaatttttttaatattttatatataa aaaggTATTCTTTTAGACATATTGTAGAGATAATaataatttgtaatttt tttttcatacatAGATTTAACACTAAAATTCAACtctaaaacttttgaat tgTTATTAACTGCTCAcagctcaaaaatattttcttagaGATGAGATTTC AGTCTGCACTTTTACAATAGCG Run BLAST on NCBI protein sequence of TCONS_00069718-protein >TCONS_00069718-protein ID=TCONS_00069718-protein|Name=TCONS_00069718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
QKLEKMIHCGRFTTSQIAKILGIFQIICAIIITAVGIGIVIKFREVDHTL QSDKSVADTYIDNPWTTQYGAAIWMGLIMAIAGAFGCFADIKPHKSKYMY GTMFLNIVVVLAAILLLIFSHQTITWFDTCQYQYHVFHTHVMQVRDCSED DKSTGNTMYWTVFVVSLLVIPITIMMLVLLGFSNSSLLEEMCQGTCFRKM VYKSKGPDSQVSYKTKNTHEFNKEMHVNNGGAQKKEQSMNYSQPAIYC Run BLAST on NCBI transcript from alignment at scaffold_506:278063..282761- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00069718 ID=TCONS_00069718|Name=TCONS_00069718|organism=Clytia hemisphaerica|type=transcript|length=4699bp|location=Sequence derived from alignment at scaffold_506:278063..282761- (Clytia hemisphaerica) CAAAAATTAGAAAAAATGATCCATTGTGGCAGATTCACTACAAGCCAAAT
CGCAAAAATATTAGGTATTTTCCAAATCATATGTGCTATCATTATCACAG
CTGTTGGTATAGGAATCGTTATTAAATTTCGTGAGGTTGACCACACTCTA
CAAAGTGATAAATCAGTAGCCGATACTTATATTGATAATCCATGGACAAC
TCAATATGGTGCAGCAATATGGATGGGTTTAATTGTAAGTTTACCCATAG
TCATTATAAAAAACCCTGGTTTGGTAATGTAATTATTTTAGCTTTATTGT
CAATCTTTCCTTCGTTGTAAATAAAAGGCAAGTTGTGATTTGCATACTTT
TTTATCACGTTACCATTTTCGACTCTTGGGATTGGTTTATTTTATGATCA
CATGATCAAAAACTATGCAAAACAAATCAATTAAAGGTACGCAAGTTCTA
ACGGTTAACAATAGAAAGAAAAAAAAGCCTTCCAGACCGGGTTTTTCTAT
AATGACTATGGTTTACCGTCCGTTTGTACATACATGTTTTTATTTTATTT
TATAAGCATAATGATTATAAGCATAAACGTCAGGGCTCGGTTTTTTTAGT
ACCTAAACAATGGCTCTATTGTTTGAGAACAATAGAATGCTAAGCATAAT
GTGAGCCTGGCTGATATAGGGACAGACACTTGCTTTAAAAAACACACGTA
CTTGACTGTCTCTAATTCGATTTTCAATTTTTTCGATTTTCATCGCATAA
GGGAACGTATCGAATAGTAAAAGTTCCTTTATGGGAGCTTCTGATAAAAG
ATGACTTTCAATATTATCGAAAAATCGAGTGTGTTAAATAGTAGAACGTT
GAATTAGGGAGCGTCAATTGTATAATTCGAACTATACTTTAATAGTATTC
CATTTGTAGTTTTTCGATTACGATCTTTGGGCGATCTTTCAAAGCCTTAG
TGCAAGCTGTTTTTTGAAATCTGCTCGCACTTATTGCAATAAAACAATAG
GGTATTATTCCAGTAAATATTTTTCTTTCATCCTCCTCTCACCCAAAGTA
GAAATTCTGAATAAAGGGGGTACATAGTCTACGGTGGGATATTCTTCAGN
CGTCAATTGTATAGTTCGAACTATACTTTAATAGTATTCCATTTGTAGTT
TTTCGATTTACGATTTTTCAAAGCCTTAGTGCAAGCTGTTTTTTGGAATC
TGCTCGCACTTATTGCAATAAAACAATAGGGTATTATTCCAGTAAATATT
TTTCTTTCATGCCTCCTCTCACCCAAAGTAGAAATTCTGAATAAAGGGGG
TACATAGTCTACGGTGGGATTATTCAATCTTTTTGTAACAGACAATCTGC
TCCAGAAATATGGGAATTTTCTATATACCCAGGACAGAAATTTTTGATAT
CCCAAGGGGTAAATTATCGAATGATCAAAAGATTTCTTTTTCTCATAGAT
GGCAATAGCAGGAGCTTTTGGATGTTTTGCTGATATTAAACCACACAAGT
CTAAATATGTAAGCAACACTGTTTTTGATTTCTGAGAATATTCTGTATTG
TGATGGCACTATGATATGTGTATTGATGCATAGAGATTCGATTCAGCCCT
TCGGGCTTATACTTCATCGGTAATAATGCGTTACGTATATAACATGGTGA
TAATCGAGTGCCCCCCCTTGGGGGATATGGCTATTCTTATGAAGTATATT
ATAATGATAAAACATGAAATTCCACCATCTCACCGACTTTTAAGCGCGTT
AAACTACAATTGGAAAGTAGAGTTTTAACTCTGAGTTTTAACATGAGACT
TAAGCCTTAGGGTCTTAGGATCTCAGGATTTAAAAGCTCAAATTTACTCT
AATAGGGCTTGAAATATAGCCTAGAAGCCACCAAACCCCTCCAAAATCGA
AATATTCAATGAAAGAGAGTTGAAGTGCTAAAATTGCCTGAAAAATGAAA
TTCTCAGAGCATTAAAATACACTAAAATCTCGATATATTTCGACCATAAT
TGTACACAAAAATTGGCTGAAATTTGACTTGCGCATACATTTATTAAAAC
TTTCTAATTATTTCTTTTCAGATGTACGGTACCATGTTTCTAAACATTGT
CGTCGTTTTAGCCGCCATTTTACTTCTCATCTTTTCCCATCAAACAATCA
CGTGGTTTGACACGTGCCAATATCAATATCACGTGTTTCATACTCATGTT
ATGCAAGTAAGAGACTGTTCTGAAGACGATAAATCAACTGGCAATACAAT
GTATTGGACTGTCTTTGTCGTTAGTTTGTTGGTGATCCCGATTACAATTA
TGATGCTGGTTTTATTGGGATTCTCAAATTCATCATTGTTGGAAGAAATG
TGCCAAGGAACGTGTTTCAGGAAAATGGTTTATAAAAGTAAAGGACCAGA
TAGTCAGGTAAATCTTCTTTTTCTAGTCTTTCTTTTTCCAATAACATTGA
GTCATATTTTGGAAATTGGTTAGCTTTTTGGGTCTATTGTCGGTTTTTTT
CAAGTTCACATGACTGTATTTCCATTGGCTGAGCATTTATACAGGGTTTG
TAAATAGTTGTGCCGTACTTGTTCTCGGAAAGTGCAGGCAATTGCTATTT
CCTTTTTGGATTAAGTCTAAAGACTGATTTTCTCCTTTTATTTGCTTAAT
CTTATACAATAGTATTTTTGTCCTTGCAACACAAAAATTTAAGTTCTCGC
CTAGTACACTGATCTACCTCCCTATGTGCTAAAATCCGCATGAAAGAGGA
ATAGGTTCGAATCTACAAGTGTGAACGATGTCAAATTTCTGAAGTCATTA
CATTGATACAAGTTTTTTTTTCATAAGAACATTCAAAATTTTTGAAGCCT
TCAAATATTCTTAACTTGTTTAGCTTTAAGCCTAAAAATATTCTGAACAT
GTTCTTATTTTCACCATTTTTTGAGCAATCTTGTCAATTTCACCCAATTT
GAAATTGGGTGTTTTAGAGTCCGCAAAGCCTTAAAATGTTCTTATCTTGT
TCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCTT
ATAAAAAACGTCTATGTACTCACAGATGCAGATCTTTGTTTCATTCGACC
CCTTGTAAACTGGAACACAGTCCCCTGGAAGAGTTTGGATTGTTAGGTGT
ATTGAATTTTTTTGAATAGAGGTTTCTTCAACTTTTTCTTCATTCAAAAT
TTCAACAGGTCAGCTACAAGACAAAGAACACGCACGAGTTCAATAAAGAA
ATGCATGTCAATAATGGTGGGGCACAAAAAAAAGAACAGTCAATGAATTA
CAGTCAACCTGCAATTTATTGTTGATATTACTAATGGTAAAGTATGTATT
GTGAAAGATCGAGTTACAATGGTATTTTTAAAAGTGATAGGTACGGCGGT
GGATTTTCAAAATCAGCGCATTTGGGACCAGCTTCTTTAGAAATGGAAAA
AAAGTCCTGGGTACTATATTACAGATGAAAATTATATCAAAAATTACTTG
TTATTGATTCATAAAATAACATTGTACCTGAAGTGGATAAATTTTCGCAA
AATGAAGATTTTAAATTTTCGAGTCGACAAAATTTCGTGAATTGGCCAAT
TTATCGCCTAATTTTTTTCTTTTTTTCCGGATTATTCATCTTTTCACAAG
GACTAAATTTCGCAGAAATTGTCAAAAATCGTGAAAATTCTAATCGACGT
AAAATTTACTTCAAGTTACTCAAAGAAAAACACAGAGATAAATGAGTTTT
TACGACTAGCTTGCAATATAAACAGACCTGGATTAATCGTCGGTTTTTTG
CATTTTTGCGGACATAAGTCCGTCAACTTCGATTTCGTGGACACAAAAAG
CGTAGGAATATAGGAGCACGTTTGTTTCCTTCGGAGAAGTTAGAGAATGA
AAGTCTGTCTATTGATTTTAACGAGACAAAAACCAGACGACTTCACGTCT
ACTTATATTGCGAGCTAGCCGTTTTTACACTCCACTAACTTGAGAGTGTT
TCCAAAATTTACATTGCATTTGACAATTGTGCAAGTCATTCATTCATAGA
TGAATAGAGGGACTTTATCAAAGACATTCCTTAATTCCTAACGAATCACC
TTGCCGTGCATGAAGCTCGATTGGGCAACTTGTAATTATTATCCAGTTTA
GCAGCAACCACCTTCCCAAAGCCACACGAAAAATCAACCCTTTCTTGAAA
GTTTTTGACCATTTTAAGACAAAATATGGTCAGATTTTTCAATTTTTACA
CCCTTGGAGTGCAATTTTTCTCATGTCTTCATCCTTGCAGTGCACTTCGA
AAAGCTTGGAAAAAGCCGGGACACGCACATACTGTACCTCGTTTACCTTA
ATTGCTCCTCCCCCGATCGATATGCACGATCATAATTTGCGTAGGTTTAT
CGTGTTTCAAGATCTGAGAGAATTTTATACAAGGTTGAGACTGGACTTGC
CGTTGCTTGATCAAGCTGTCAACATGAAGAATGTCGTTAATACTAAATAG
ACAATTTTTTTAATATTTTATATATAAAAAGGTATTCTTTTAGACATATT
GTAGAGATAATAATAATTTGTAATTTTTTTTTCATACATAGATTTAACAC
TAAAATTCAACTCTAAAACTTTTGAATTGTTATTAACTGCTCACAGCTCA
AAAATATTTTCTTAGAGATGAGATTTCAGTCTGCACTTTTACAATAGCG Coding sequence (CDS) from alignment at scaffold_506:278063..282761- >TCONS_00069718 ID=TCONS_00069718|Name=TCONS_00069718|organism=Clytia hemisphaerica|type=CDS|length=2988bp|location=Sequence derived from alignment at scaffold_506:278063..282761- (Clytia hemisphaerica) GTCAGCTACAAGACAAAGAACACGCACGAGTTCAATAAAGAAATGCATGT CAATAATGGTGGGGCACAAAAAAAAGAACAGTCAATGAATTACAGTCAAC CTGCAATTTATTGTTGAATGTACGGTACCATGTTTCTAAACATTGTCGTC GTTTTAGCCGCCATTTTACTTCTCATCTTTTCCCATCAAACAATCACGTG GTTTGACACGTGCCAATATCAATATCACGTGTTTCATACTCATGTTATGC AAGTAAGAGACTGTTCTGAAGACGATAAATCAACTGGCAATACAATGTAT TGGACTGTCTTTGTCGTTAGTTTGTTGGTGATCCCGATTACAATTATGAT GCTGGTTTTATTGGGATTCTCAAATTCATCATTGTTGGAAGAAATGTGCC AAGGAACGTGTTTCAGGAAAATGGTTTATAAAAGTAAAGGACCAGATAGT CAGATGGCAATAGCAGGAGCTTTTGGATGTTTTGCTGATATTAAACCACA CAAGTCTAAATATCAAAAATTAGAAAAAATGATCCATTGTGGCAGATTCA CTACAAGCCAAATCGCAAAAATATTAGGTATTTTCCAAATCATATGTGCT ATCATTATCACAGCTGTTGGTATAGGAATCGTTATTAAATTTCGTGAGGT TGACCACACTCTACAAAGTGATAAATCAGTAGCCGATACTTATATTGATA ATCCATGGACAACTCAATATGGTGCAGCAATATGGATGGGTTTAATTGTC AGCTACAAGACAAAGAACACGCACGAGTTCAATAAAGAAATGCATGTCAA TAATGGTGGGGCACAAAAAAAAGAACAGTCAATGAATTACAGTCAACCTG CAATTTATTGTTGAATGTACGGTACCATGTTTCTAAACATTGTCGTCGTT TTAGCCGCCATTTTACTTCTCATCTTTTCCCATCAAACAATCACGTGGTT TGACACGTGCCAATATCAATATCACGTGTTTCATACTCATGTTATGCAAG TAAGAGACTGTTCTGAAGACGATAAATCAACTGGCAATACAATGTATTGG ACTGTCTTTGTCGTTAGTTTGTTGGTGATCCCGATTACAATTATGATGCT GGTTTTATTGGGATTCTCAAATTCATCATTGTTGGAAGAAATGTGCCAAG GAACGTGTTTCAGGAAAATGGTTTATAAAAGTAAAGGACCAGATAGTCAG ATGGCAATAGCAGGAGCTTTTGGATGTTTTGCTGATATTAAACCACACAA GTCTAAATATCAAAAATTAGAAAAAATGATCCATTGTGGCAGATTCACTA CAAGCCAAATCGCAAAAATATTAGGTATTTTCCAAATCATATGTGCTATC ATTATCACAGCTGTTGGTATAGGAATCGTTATTAAATTTCGTGAGGTTGA CCACACTCTACAAAGTGATAAATCAGTAGCCGATACTTATATTGATAATC CATGGACAACTCAATATGGTGCAGCAATATGGATGGGTTTAATTGTCAGC TACAAGACAAAGAACACGCACGAGTTCAATAAAGAAATGCATGTCAATAA TGGTGGGGCACAAAAAAAAGAACAGTCAATGAATTACAGTCAACCTGCAA TTTATTGTTGAATGTACGGTACCATGTTTCTAAACATTGTCGTCGTTTTA GCCGCCATTTTACTTCTCATCTTTTCCCATCAAACAATCACGTGGTTTGA CACGTGCCAATATCAATATCACGTGTTTCATACTCATGTTATGCAAGTAA GAGACTGTTCTGAAGACGATAAATCAACTGGCAATACAATGTATTGGACT GTCTTTGTCGTTAGTTTGTTGGTGATCCCGATTACAATTATGATGCTGGT TTTATTGGGATTCTCAAATTCATCATTGTTGGAAGAAATGTGCCAAGGAA CGTGTTTCAGGAAAATGGTTTATAAAAGTAAAGGACCAGATAGTCAGATG GCAATAGCAGGAGCTTTTGGATGTTTTGCTGATATTAAACCACACAAGTC TAAATATCAAAAATTAGAAAAAATGATCCATTGTGGCAGATTCACTACAA GCCAAATCGCAAAAATATTAGGTATTTTCCAAATCATATGTGCTATCATT ATCACAGCTGTTGGTATAGGAATCGTTATTAAATTTCGTGAGGTTGACCA CACTCTACAAAGTGATAAATCAGTAGCCGATACTTATATTGATAATCCAT GGACAACTCAATATGGTGCAGCAATATGGATGGGTTTAATTGTCAGCTAC AAGACAAAGAACACGCACGAGTTCAATAAAGAAATGCATGTCAATAATGG TGGGGCACAAAAAAAAGAACAGTCAATGAATTACAGTCAACCTGCAATTT ATTGTTGAATGTACGGTACCATGTTTCTAAACATTGTCGTCGTTTTAGCC GCCATTTTACTTCTCATCTTTTCCCATCAAACAATCACGTGGTTTGACAC GTGCCAATATCAATATCACGTGTTTCATACTCATGTTATGCAAGTAAGAG ACTGTTCTGAAGACGATAAATCAACTGGCAATACAATGTATTGGACTGTC TTTGTCGTTAGTTTGTTGGTGATCCCGATTACAATTATGATGCTGGTTTT ATTGGGATTCTCAAATTCATCATTGTTGGAAGAAATGTGCCAAGGAACGT GTTTCAGGAAAATGGTTTATAAAAGTAAAGGACCAGATAGTCAGATGGCA ATAGCAGGAGCTTTTGGATGTTTTGCTGATATTAAACCACACAAGTCTAA ATATCAAAAATTAGAAAAAATGATCCATTGTGGCAGATTCACTACAAGCC AAATCGCAAAAATATTAGGTATTTTCCAAATCATATGTGCTATCATTATC ACAGCTGTTGGTATAGGAATCGTTATTAAATTTCGTGAGGTTGACCACAC TCTACAAAGTGATAAATCAGTAGCCGATACTTATATTGATAATCCATGGA CAACTCAATATGGTGCAGCAATATGGATGGGTTTAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00069718-exon-scaffold_506-1575043694:282528..282761 | TCONS_00069718-exon-scaffold_506-1575043694:282528..282761 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1575043694:281254..281313 | TCONS_00069718-exon-scaffold_506-1575043694:281254..281313 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1575043694:280355..280690 | TCONS_00069718-exon-scaffold_506-1575043694:280355..280690 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1575043694:279421..279553 | TCONS_00069718-exon-scaffold_506-1575043694:279421..279553 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1575043694:278063..278471 | TCONS_00069718-exon-scaffold_506-1575043694:278063..278471 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1510915933:282528..282761 | TCONS_00069718-exon-scaffold_506-1510915933:282528..282761 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1510915933:281254..281313 | TCONS_00069718-exon-scaffold_506-1510915933:281254..281313 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1510915933:280355..280690 | TCONS_00069718-exon-scaffold_506-1510915933:280355..280690 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1510915933:279421..279553 | TCONS_00069718-exon-scaffold_506-1510915933:279421..279553 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1510915933:278063..278471 | TCONS_00069718-exon-scaffold_506-1510915933:278063..278471 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1491911889:282528..282761 | TCONS_00069718-exon-scaffold_506-1491911889:282528..282761 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1491911889:281254..281313 | TCONS_00069718-exon-scaffold_506-1491911889:281254..281313 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1491911889:280355..280690 | TCONS_00069718-exon-scaffold_506-1491911889:280355..280690 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1491911889:279421..279553 | TCONS_00069718-exon-scaffold_506-1491911889:279421..279553 | Clytia hemisphaerica | exon |
TCONS_00069718-exon-scaffold_506-1491911889:278063..278471 | TCONS_00069718-exon-scaffold_506-1491911889:278063..278471 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_506 | supercontig | scaffold_506:278063..282761 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR007237 | CD20-like |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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