TCONS_00069714 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069714
Unique NameTCONS_00069714
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069714 ID=TCONS_00069714|Name=TCONS_00069714|organism=Clytia hemisphaerica|type=transcript|length=456bp
tTTTTCTTTCGATCACAACATCCATCTTGTTTTGCTAAAACCAGCCAGCT
ATTGGAGGATGGGTGATGATGTTAGATGATCAATTCTGTCCATTTTCATA
TTAATCATGGAATTGAGAGacactaAATGGGCTGCGAAGACTTTCAAACG
ATGGAACAGCAAACCAGCATCGCCAAAagtctcgccaaaattaatacgAG
GATTATCAGTGCCTAGCAAGATTCGTAAGAACGAAGATTCTCAATTAGTA
GCGAAAAACCGAGATTTTAccaacattttattttcaaaggaattCCTGAA
GAAATTCAATTCAAATGTCGACCCAAGCAAGtGTTACAAGAAATACTTTC
AAACGATGGCAAGAAGGGTAAGGatattactcttaggtgccaaataaacg
ggccccccccgcttgttaatttttcgaaaattttccaacccccccggacc
ttatta
Run BLAST on NCBI

transcript from alignment at scaffold_506:211252..215936-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069714 ID=TCONS_00069714|Name=TCONS_00069714|organism=Clytia hemisphaerica|type=transcript|length=4685bp|location=Sequence derived from alignment at scaffold_506:211252..215936- (Clytia hemisphaerica)
TTTTTCTTTCGATCACAACATCCATCTTGTTTTGCTAAAACCAGCCAGGT
AGAATTTTCTTCCTTATTTTCTTTCATTAATCAGATTTTTTATCAGTATT
CAATTTGAAGCTCTTTTTGGCACATTACTGAGGAACAACAACGACACTCG
TAGCTATCATGATAACAATACCAAGGTACACGTTTTTTTTTATAAGAACG
TCAAGAATTTTCGAAGCCTTCGGATGTTCTTAGTCTTTTGGATTTGAAGC
CTAAAAATGTTCTTAAAATGTTCGTATTTTCAGCATTTTTTGAGCATTTT
GATGTAATTTCTTAAGAAAATGCATGTTTTTAAGTCTCCAAAGCCTTAGA
ATGTTCTTAGAATGTTCTTAAATTTTTGGGCCTCGAAGCCTTATGTTCTT
ATATAGTTTGTTCTTATAAAAAAAACGTGTAATGCTTCTTACGTCTTTCT
AACAATAATAGCTACACGTTTTTTTATAAGAAGAAATTATATAAAAAAAA
TTTAAAGCTTTGCGGACTCGAAAACACCCGATTCTACAAAAAATGGGTTA
AAATGGTCACAAAATGGATAAAATAAGAATATTTTTAGGCTTAAAACCCA
AAATGTTAAGAACATCCGAAGGCTTCAAAAATTTTGGATGTTCTTATTAA
AAATGTGTATCCTTGCATCAGGGTTTCGTGATAGAATGATAGCCATAAAA
CTGAACATTTATACACGTTTTTTTATAAGAACATCCAAAATTTTTGAAGC
CTTCGGATGTGCTTAACTTTTTTAGAGTTTTTAAGCCTAAAAATGTTCTT
AACATGTTCTTATTTTGACCATTTTGTGAATATCTTTGACCATTTCTTTA
AGAAATAGTGTGTTTTTGAGTCCACAAAGCCTTAAAATGTTCTTAACTTG
TTCTTATATAGTTTGTTCTTGTAAAAAAATGTGTATGCGACTATTCAGTC
CTCTTTATAATATTTTCCAGGAGGATCATTTTTCTTAAATTAAAAGTTTT
CCTTAAAACTTTTTTTCACAAGCAGTCGATAATAAGTCTGTATTTGTTCC
TTGTCATTAAAAGCTTCTGTCTTCATTTACGAACTTACATTTTATTGCAT
TTTTATTTCAGCTATTGGAGGATGGGTGATGATGTTAGATGATCAATTCT
GTCCATTTTCATATTAATCATGGAATTGAGAGGTATCTATCATATATATT
TTTTTAATACCCATATATTTTCTCTTTTTATCACTACAAATTGTTGACAG
TAAAGAGGTCAATAAACTATTAACCTGAAGTGCTGAAATAAAATAGAATT
TCTAACCTTCTCTATCAGAAATTTTAAATATATATGCCGCACTTTGGACG
ATAGTATGACGCTAAAGCTTTTTCAAGCAGATAGAAATTCTACAAAGGCT
ATCGAAACCCTAACACTTGGTACTACAGTGAAATTTCCGTAACTCAAACA
CATGCGGAGAACACATGTTTGTTCGAATTAGGGAAATTTCGAGTTTAGGA
AGATTGGTTTATAAGGCATTGTTACTGAAGGGACCGGAAAACTTGTTCGA
GTTAAGGAGACATTCGAGCTATAGAGGTTCGAGTTATGAGAGTTACATCA
TAATAAGTCTCCACCCTTAAAGAGCGGTTGCAAATATGTCGATTCGAGCT
ATTTATGGAATTTATATGTTTATTATGGAAATTTCGAGTTATAAAGTAAG
GTTTATAAAGCATTGTTAACTGGAGGGACGAGAAAACTTGTTCGAGTTAA
GGAGACATTCGAATTATAGAGGTTCGAGTTATGAAGACTCCACTGTATCA
AAGTTTATCTTTTCAAATTGCCTTAAGAAGATATTGACCATTTCTCTTTT
TTTTCAACTAAACATATTTTTATCTGGAAAGTTATTTTTTTTCAGACACT
AAATGGGCTGCGAAGACTTTCAAACGATGGAACAGCAAACCAGCATCGCC
AAAAGTCTCGCCAAAATTAATACGAGGATTATCAGTGCCTAGCAAGATTC
GTAAGAACGAAGATTCTCAATTAGTAGCGAAAAACCGAGATTTTACCAAC
ATTTTATTTTCAAAGGAATTCCTGAAGAAATTCAATTCAAATGTCGACCC
AAGCAAGGTAAAGTCGTGTCACTGTTTAGGTGATTTCTACAGCTTTAATT
GTATTAGCGACACGAAGAGGTTCCTTATTTTGATCAGAATTTAATCTCTT
GCTTAAAAACGGGACTATGGGCTGTCATCCCGAATCTCCGGGGGAGCAAC
CAGAGTGTTTTATTACGTGGTTATTAAAAAAATTTTTTTTTTCAAATGTA
TTAAATCAGACTTTCTCTGACAATGAAAAAAATTATTTGTAGAATTTGAG
ATTTGCAGAAGTTGAGCCTTTAACAAGATGGTCTATGTTTCCAATTTTAG
TTCTGGTTTACTTAAGACATTAAATGTTGGACTTAGTAAGTGTTAGTAAA
GCTTATTTTCTGACGTCAGAAGGTTTCTTCGGCTAAAAGGTTTCATAGTA
AAGTGCCTTGTTAAACTATTGTTTAGTTTATTTCTCTTTGTGCCTTGTGA
CCGTTTGTGACTTTTATTTCAGAAAAAGCTTTAGGTTTTTCGAATTTTTC
AATCTGAACAAAGTATATTTAGTAATAGCTTGGTGTTTATGGAAAGCACC
CTAGAGGGGTTGAGTCTAGGCAGCTTGTAGTGGAATAATAAGTAGTGAAT
TGATGATATACACGAATTATTCGCGTCTAAACGCCCTCTTTGGCCCAAAT
AAGAGCATTTGACATTACACTATTGTTATTTTTGTGTAACGGAGCTAGCT
GCAATTTCGTTTTTGTCGTTAAAATATTTATGTTGGGAAATGACAGATGA
AACTTGCGACAAGTATAATGAAATTACAATAAAATGCAGAGAGTAGAATA
CTGAATAGAAGAATAAGACGAAGAATGAAAAATGAAGATTTTAAAACTCG
TGAAACTTTACGGATTTGAATGAACAGTGTAACATGAGCTATACGGTAAG
AGATAGATTTAACATGTAGTCTTTTTTCATACGTTTTTTAGCATTTGTAT
CTTTATAACCAATCTTTGAAATTTCTTTCTTCCGAAATGAATTTGAAAGT
AAAAATTTCAATCACGATTTAATATGGATGTCTATTGGAAATATTTGGTG
AAGAAACATCAGTCAACTCATGTCGAAAGTGAAAAAGGGAAGGTACTGTA
ATAGAAATTCTTTCAATTTGTTTTGATTCACTCCTACGTGGATTATTATC
TTTTTAACCTCCGAAATACTGGTCAAAATTAAAATGCAACAAATTAGTGA
AAGAGGAAGGGAGATGATAGAAAAAAAAGAAAAAAGAAAAAAGGTTTTAT
TGGTATTAAAAAACAATCCTTTAGTGATGATGGTTGCACTAAACTTTGTG
TGAAATCTTAGCCAGTTTTTTTTTCTTTGCTGGAAAATTGACGTCACAAG
TTTGAAATGAAAATATGATGGCATTGCATTGCTCTCAAGAACTTCAATTA
CAGGAAATTTTCTACAGTTGTAAAGTAAAAATCAGATCGCATACACACAA
AAAGGATTATTTTTTGAACAGATACAGAGGAATTTCATAGGTTTTTTATA
CAATAATCCAATAAAATGGATAATGGAAAAAGCACGAGAACATTTTCTCC
TAAAGTTCATTTAAGAGATGCAGTTCGTAAAGCATATCAACCGCCTAAAT
CTCTAGCGTTGATACGTTTGTTAGATCGTATTCACAGAAATGAAACTCCA
GGCAGTGGAAAAGATGCGGAAATTACATCAATGGAAAATCAACGCGAAAT
ATTGAAGAAGAAGATTCAACGGCGTAGAGCAATGATGAAAAACAAATTAC
GTGTTGCCGTTCATTCGGCAAACAGGGAGCAAAAAGTTGAAAAGATAGTA
AGAGTATACTATATGTGAGATTTCTATGCTTTTGAGTAGTTTTAGTACAA
ATGCTTAAAGTGATAATCAGATGGTTTGAGATATTTGGCCGGCAGAAAGC
TTATGGACTTGAGTAAAACCTCCAAGTCTGTTTGGGTAACTATTTTCCAA
AGTCAAGATATCGCAGTTTGAAATTTCTGAAAATGGGTTCCCACACGGTT
CTTACGCTGGAATTGTATCGTTTTCTTATTAAAAGCCAAAAACTAGTAAT
TTAGATATCTCGACTTTGGAAAATATTTAGGTAAAAATATTTTGAGGTAT
TGCTCAGGACAATAGAAAGATTACACATGCCAAATATCTCAAACCATCTG
ATTATCCCTTTAATTTCGATTTAGTTCAATAGATTCTGCTCTGCAATTAA
TTTATTATATATCACATTTTTTAGAGAAAAGACTACTGAGTAAGACTAGA
AGACTAGTAAACTATAATGCGCAGCAGTGTAGGTGCAGCGGGTCCATTTA
GGGCGCCGAAAGAAAAGGGGTACAGAAAATGCTCCTCGGGTTAGTAATCT
CGGCGCCCCTTTCCCACAGACAACGGACTCTTAGACGAAAATTTATACCA
AAATATTCTTGAGGTGGTTATCTATTATTATAGAAGTATTATGTATTTTA
TTCTTTTTAGTGTTACAAGAAATACTTTCAAACGATGGCAAGAAGGGTAA
GGATATTACTCTTAGGTGCCAAATAAACGGGCCCCCCCCGCTTGTTAATT
TTTCGAAAATTTTCCAACCCCCCCGGACCTTATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043409XLOC_043409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069714-exon-scaffold_506-1575043694:215889..215936TCONS_00069714-exon-scaffold_506-1575043694:215889..215936Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1575043694:214755..214825TCONS_00069714-exon-scaffold_506-1575043694:214755..214825Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1575043694:213830..214041TCONS_00069714-exon-scaffold_506-1575043694:213830..214041Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1575043694:211252..211376TCONS_00069714-exon-scaffold_506-1575043694:211252..211376Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1510915933:215889..215936TCONS_00069714-exon-scaffold_506-1510915933:215889..215936Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1510915933:214755..214825TCONS_00069714-exon-scaffold_506-1510915933:214755..214825Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1510915933:213830..214041TCONS_00069714-exon-scaffold_506-1510915933:213830..214041Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1510915933:211252..211376TCONS_00069714-exon-scaffold_506-1510915933:211252..211376Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1491911889:215889..215936TCONS_00069714-exon-scaffold_506-1491911889:215889..215936Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1491911889:214755..214825TCONS_00069714-exon-scaffold_506-1491911889:214755..214825Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1491911889:213830..214041TCONS_00069714-exon-scaffold_506-1491911889:213830..214041Clytia hemisphaericaexon
TCONS_00069714-exon-scaffold_506-1491911889:211252..211376TCONS_00069714-exon-scaffold_506-1491911889:211252..211376Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_506supercontigscaffold_506:211252..215936 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.386177	0.786212	0	0.20013	0.121005	0	0	0	3.2972	1.63237	1.37289	1.24346	5.55531	3.31788	1.28785	1.306	0	0	18.1391	10.7749	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069714 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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