TCONS_00069684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069684
Unique NameTCONS_00069684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length505

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069684 ID=TCONS_00069684|Name=TCONS_00069684|organism=Clytia hemisphaerica|type=transcript|length=505bp
agaaaaaatgcgTCTTAACTAAGTAAATATTTGAGGCCTGTAATTCATTT
TTAATAGTTTTGAAAGCGAGGAAAAACCGTTCGTTACGTTCAATTTGATG
ATTTATTCCTTTTTTGATGATTTATGATCGTATGTTGAAAATACCTCAGT
TTTGCAAGCCGATGCCAATTGCCAGTGCAAAAAAGGAAATACATTAAAAA
TGACTTACTACTTAGTTTTAAACGAAATTGCATTGAAACCAGGCTTTGAT
TAGAACTATTGAGGGTTTTGCAGTTGTTGGAAATATCGGCTTACCAAACA
GGGGTGTGTAATCTTTTTAAGATTGAAAGTTCGAAACTAGTTagtaaact
ttaaaaaaaaaaccttttcatGGAACACTAATTTTGTATCATATTCtatt
aagattttgaaatttattataTTGTAATTGACTTTTGTGTACATATAGGA
ATTCGCTGTTAggcttattttcaaattttgaataattgGATTTTTATACC
AGCAT
Run BLAST on NCBI

transcript from alignment at scaffold_505:121341..121845

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069684 ID=TCONS_00069684|Name=TCONS_00069684|organism=Clytia hemisphaerica|type=transcript|length=505bp|location=Sequence derived from alignment at scaffold_505:121341..121845 (Clytia hemisphaerica)
ATGCTGGTATAAAAATCcaattattcaaaatttgaaaataagccTAACAG CGAATTCCTATATGTACACAAAAGTCAATTACAAtataataaatttcaaa atcttaataGAATATGATACAAAATTAGTGTTCCatgaaaaggttttttt tttaaagtttactAACTAGTTTCGAACTTTCAATCTTAAAAAGATTACAC ACCCCTGTTTGGTAAGCCGATATTTCCAACAACTGCAAAACCCTCAATAG TTCTAATCAAAGCCTGGTTTCAATGCAATTTCGTTTAAAACTAAGTAGTA AGTCATTTTTAATGTATTTCCTTTTTTGCACTGGCAATTGGCATCGGCTT GCAAAACTGAGGTATTTTCAACATACGATCATAAATCATCAAAAAAGGAA TAAATCATCAAATTGAACGTAACGAACGGTTTTTCCTCGCTTTCAAAACT ATTAAAAATGAATTACAGGCCTCAAATATTTACTTAGTTAAGAcgcattt tttct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043389XLOC_043389Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069684-exon-scaffold_505-1491911889:121341..121845TCONS_00069684-exon-scaffold_505-1491911889:121341..121845Clytia hemisphaericaexon
TCONS_00069684-exon-scaffold_505-1510915933:121341..121845TCONS_00069684-exon-scaffold_505-1510915933:121341..121845Clytia hemisphaericaexon
TCONS_00069684-exon-scaffold_505-1575043694:121341..121845TCONS_00069684-exon-scaffold_505-1575043694:121341..121845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_505supercontigscaffold_505:121341..121845 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1.13144 1.40498 1.38686 0.432787 0.808011 0.37532 0.485726 0.159649 0.23914 0.413915 0.0680589 0.0730376 0.0899764 0 0.382233 0 0.347654 0.339147 0 0.24988 0.386056 0.918789 0 0.350793 0.399097 0.271078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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