TCONS_00006927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006927
Unique NameTCONS_00006927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length179

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006927 ID=TCONS_00006927|Name=TCONS_00006927|organism=Clytia hemisphaerica|type=transcript|length=179bp
GTTGTTGTTGATCCAGTTCTCTCCAAAGTATTACGTCCTCATCAACGTGA
aGGTGTGAAGTTTTTATACGATTGTGTTGTCGGCAGCCGAATTGAGAATA
GTTTTGGCTGTATCATGGCTGATGAAATGGGCTTGGGAAAGACGTTACAA
TGCATCACACTACTTTGGACGTTGCTGGT
Run BLAST on NCBI

transcript from alignment at sc0000072:301353..303234-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006927 ID=TCONS_00006927|Name=TCONS_00006927|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at sc0000072:301353..303234- (Clytia hemisphaerica)
GTTGTTGTTGATCCAGTTCTCTCCAAAGTATTACGTCCTCATCAACGTGA
AGTAAGAAAAATCTTTTTAACTCTATTTGAACGTTTATTCTACTCTAAGT
ATTTGCATATTACAGCCTCAAATTTGGAATATACTCCTCGTAGTTAATCC
GAATATATTAGTGTTTTATGTGATCAGATTTTTATTGTAGCATTTTCAGC
AAACATGGTTTTTTTTTCTAGGGGTAATTATTAACCAATCCAGGGAATCT
ATCATTGATTTCAAATTCCACTTCAATTTCATTTCTTACACTTTTTACAG
GGTGTGAAGTTTTTATACGATTGTGTTGTCGGCAGCCGAATTGAGAATAG
TTTTGGCTGTATCATGGCTGATGAAATGGTAATTTAAAACTATGAATACT
TTGTGAAGTTTTGCGCTATTAAAAAAGTTTCTAAATGTCACGGGTAGTCC
AACAAAAGTTTCCCTTAAATTCAAATAATTGACAACTCTCTTGCATTATT
GACTTTATACTTCCTGAAGTCAAATTCTTTATACATTCTGTAGGGCACCT
CTAATAATTTTCAAAAGTTGATTTTGATGCTCGTGGTCGTGGTTTCTGTG
TGCACATGATGTGACAAATAAAGAATTGAGAAAGATCTTTACTACCACCG
TAGGTTGGTCTAATGTTGACATCCCTCTTTTAATTTCGACACCCTTCTTT
AGAGATAATAGGAAGGTCGGAATCGCTGATAGACAAACAATTTATTCCTC
TCTGATTAATAAGCAAAGAAAACTATTTTAGGCGTACGATCTTTTGCGGA
CAGAAACTTTCGCGATTTTCGCGAATTTTGGCCCTTTTCGCGAAAGTAAA
TGTTTTTAAAAATACTAGGAAGGGCCATTCGCGAAAGTTTATGCTCCGAA
AAATTCTTGACAAAATAAAAAATCTGTAAAACTTCCAACTTTGAATAAAA
TGTAGCTTTTATGGCACTTTTTAGCCTGCTAAAAGACTAATAAGTCAAAG
GACAAATTTTTCGAGCCAATCCAAGAAGTATTTTGTCCCTCTAAGCCATT
TTTTCATGTGAAAATTCTCAATTTTACGTCTTGATTCGCGAAAGTTTATG
CTTGCGAAAAATATTTGTCCGTTAAATTCGCGAAAGTAAATGTCGTGAAT
TTCGCGATTTTTCGTCCTCGCGAAAGTTTCTGCTCGCGAAAGTTTGTACG
CCTAAAGTAGTTTCAATCAGTGATTCCGACCTTTACATTATTTCTATCTA
AAGAAGGGTGTCGAAATTTAAAGAGGGATGTCGACACTAGATCATCTTAC
GGCATAAGCGTATAAGGAATTTTAACCCTTTCCGGACGCATGATTTCACG
GCTATATGACGCAAACAAAAATTTGATTTTTGACTGGCTTCACTAAAATT
GCAATAGAAAGTGATTGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAATTTATCTCAAAATCATTATTCAAA
ACCATGTTATTGTATTTTGGCGCGAAAACTGTTAAAATCTTTTACAAAGC
TATGGGCCACCCGGTGGCCCGTGCGTGGGCCACCCGGTGGCCCGTGCGTC
ATATAGGAACACGATTCATGGGCCACCCAGTGGCCCGTGCGTCCGGAAAG
GGTTAATGTTTTAATTTCTCTCAAACCTTAAGGGCTTGGGAAAGACGTTA
CAATGCATCACACTACTTTGGACGTTGCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003875XLOC_003875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006927-exon-sc0000072-1575043694:303184..303234TCONS_00006927-exon-sc0000072-1575043694:303184..303234Clytia hemisphaericaexon
TCONS_00006927-exon-sc0000072-1575043694:302857..302934TCONS_00006927-exon-sc0000072-1575043694:302857..302934Clytia hemisphaericaexon
TCONS_00006927-exon-sc0000072-1575043694:301353..301402TCONS_00006927-exon-sc0000072-1575043694:301353..301402Clytia hemisphaericaexon
TCONS_00006927-exon-sc0000072-1510915933:303184..303234TCONS_00006927-exon-sc0000072-1510915933:303184..303234Clytia hemisphaericaexon
TCONS_00006927-exon-sc0000072-1510915933:302857..302934TCONS_00006927-exon-sc0000072-1510915933:302857..302934Clytia hemisphaericaexon
TCONS_00006927-exon-sc0000072-1510915933:301353..301402TCONS_00006927-exon-sc0000072-1510915933:301353..301402Clytia hemisphaericaexon
TCONS_00006927-exon-sc0000072-1491911889:303184..303234TCONS_00006927-exon-sc0000072-1491911889:303184..303234Clytia hemisphaericaexon
TCONS_00006927-exon-sc0000072-1491911889:302857..302934TCONS_00006927-exon-sc0000072-1491911889:302857..302934Clytia hemisphaericaexon
TCONS_00006927-exon-sc0000072-1491911889:301353..301402TCONS_00006927-exon-sc0000072-1491911889:301353..301402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:301353..303234 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.96094	0	2.82284	2.64271	5.55067	4.5836	0	0	1.46025	0	1.24676	0	0	0	0	2.44238	0	0	0	0	2.35736	8.41556	0	0	0	0
Blast
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BLAST of TCONS_00006927 vs. Swiss-Prot (Human)
Match: RAD54 (DNA repair and recombination protein RAD54-like OS=Homo sapiens GN=RAD54L PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.543e-28
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 VVVDPVLSKVLRPHQREGVKFLYDCVVGSRIENSFGCIMADEMGLGKTLQCITLLWTLL 177
            VVVDP+LSKVLRPHQREGVKFL++CV   RI  S GCIMADEMGLGKTLQCITL+WTLL
Sbjct:  143 VVVDPILSKVLRPHQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLL 201
The following BLAST results are available for this feature:
BLAST of TCONS_00006927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAD543.543e-2883.05DNA repair and recombination protein RAD54-like OS... [more]
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