TCONS_00069321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069321
Unique NameTCONS_00069321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069321 ID=TCONS_00069321|Name=TCONS_00069321|organism=Clytia hemisphaerica|type=transcript|length=684bp
aACATTGATATATGTGCACTGAGCGAAGTTAGACGAGAAGGACAAGGAAA
CCTAGTCGAAAGGGATTATACAATATACTGGAGCGGAGGCACTAAGAAGG
AAGCCGGTGTTGGANGTCGTCTAGATAATGATCTTGCGAACTCTAAAATT
AATTGGGAAAACTTAAAAACTTCTCTGCTATCTGCTACGTCAAACACCTT
TCCCAAACAAAGAAAGCAAAACAGAGATTGGTTAGACGAAAATGATCAAC
AGATTCTTACACTTCTTAATGACAAAAATCGAACCAGACGTGAGATCCAA
CAAGAAgtgagaaagataaaaaatgattgGTTCATCCAAAAAGCGTCAGA
AGCCGAAAGATATCGTTTGGAAAACAATCTGAAAGACTTTTACGCTACTC
TTCGTGAGGTATACGGTCCTTCATCTCGCAACTCACACCCTATCAAATCG
AAAGACGGGAAATTGCTAACAACCAAAGGTGAAATAAAGGAACGCTGGGT
CGAACACTTTTCAGAACTTATCAACAACGTCACAGAAACCGACGAAACAG
TTCTTGATGAAATCGATCAACGTCCTATCAATTACTCACTTGATGAACCG
ATCACCGAAAAAGAGCTTGACGATGCAATAAAACGGTCTAAACTCGGTAA
AAGCCCAGGTCCCGATGGCATTATTCCTGAAGNN
Run BLAST on NCBI

protein sequence of TCONS_00069321-protein

>TCONS_00069321-protein ID=TCONS_00069321-protein|Name=TCONS_00069321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
NIDICALSEVRREGQGNLVERDYTIYWSGGTKKEAGVGXRLDNDLANSKI
NWENLKTSLLSATSNTFPKQRKQNRDWLDENDQQILTLLNDKNRTRREIQ
QEVRKIKNDWFIQKASEAERYRLENNLKDFYATLREVYGPSSRNSHPIKS
KDGKLLTTKGEIKERWVEHFSELINNVTETDETVLDEIDQRPINYSLDEP
ITEKELDDAIKRSKLGKSPGPDGIIPEX
Run BLAST on NCBI

transcript from alignment at scaffold_497:9119..9802

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069321 ID=TCONS_00069321|Name=TCONS_00069321|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at scaffold_497:9119..9802 (Clytia hemisphaerica)
NNCTTCAGGAATAATGCCATCGGGACCTGGGCTTTTACCGAGTTTAGACC
GTTTTATTGCATCGTCAAGCTCTTTTTCGGTGATCGGTTCATCAAGTGAG
TAATTGATAGGACGTTGATCGATTTCATCAAGAACTGTTTCGTCGGTTTC
TGTGACGTTGTTGATAAGTTCTGAAAAGTGTTCGACCCAGCGTTCCTTTA
TTTCACCTTTGGTTGTTAGCAATTTCCCGTCTTTCGATTTGATAGGGTGT
GAGTTGCGAGATGAAGGACCGTATACCTCACGAAGAGTAGCGTAAAAGTC
TTTCAGATTGTTTTCCAAACGATATCTTTCGGCTTCTGACGCTTTTTGGA
TGAACcaatcattttttatctttctcacTTCTTGTTGGATCTCACGTCTG
GTTCGATTTTTGTCATTAAGAAGTGTAAGAATCTGTTGATCATTTTCGTC
TAACCAATCTCTGTTTTGCTTTCTTTGTTTGGGAAAGGTGTTTGACGTAG
CAGATAGCAGAGAAGTTTTTAAGTTTTCCCAATTAATTTTAGAGTTCGCA
AGATCATTATCTAGACGACNTCCAACACCGGCTTCCTTCTTAGTGCCTCC
GCTCCAGTATATTGTATAATCCCTTTCGACTAGGTTTCCTTGTCCTTCTC
GTCTAACTTCGCTCAGTGCACATATATCAATGTt

Coding sequence (CDS) from alignment at scaffold_497:9119..9802

>TCONS_00069321 ID=TCONS_00069321|Name=TCONS_00069321|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_497:9119..9802 (Clytia hemisphaerica)
NNCTTCAGGAATAATGCCATCGGGACCTGGGCTTTTACCGAGTTTAGACC
GTTTTATTGCATCGTCAAGCTCTTTTTCGGTGATCGGTTCATCAAGTGAG
TAATTGATAGGACGTTGATCGATTTCATCAAGAACTGTTTCGTCGGTTTC
TGTGACGTTGTTGATAAGTTCTGAAAAGTGTTCGACCCAGCGTTCCTTTA
TTTCACCTTTGGTTGTTAGCAATTTCCCGTCTTTCGATTTGATAGGGTGT
GAGTTGCGAGATGAAGGACCGTATACCTCACGAAGAGTAGCGTAAAAGTC
TTTCAGATTGTTTTCCAAACGATATCTTTCGGCTTCTGACGCTTTTTGGA
TGAACcaatcattttttatctttctcacTTCTTGTTGGATCTCACGTCTG
GTTCGATTTTTGTCATTAAGAAGTGTAAGAATCTGTTGATCATTTTCGTC
TAACCAATCTCTGTTTTGCTTTCTTTGTTTGGGAAAGGTGTTTGACGTAG
CAGATAGCAGAGAAGTTTTTAAGTTTTCCCAATTAATTTTAGAGTTCGCA
AGATCATTATCTAGACGACNTCCAACACCGGCTTCCTTCTTAGTGCCTCC
GCTCCAGTATATTGTATAATCCCTTTCGACTAGGTTTCCTTGTCCTTCTC
GTCTAACTTCGCTCAGTGCACATATATCAATGTt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043199XLOC_043199Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069321-exon-scaffold_497-1491911889:9119..9802TCONS_00069321-exon-scaffold_497-1491911889:9119..9802Clytia hemisphaericaexon
TCONS_00069321-exon-scaffold_497-1510915933:9119..9802TCONS_00069321-exon-scaffold_497-1510915933:9119..9802Clytia hemisphaericaexon
TCONS_00069321-exon-scaffold_497-1575043694:9119..9802TCONS_00069321-exon-scaffold_497-1575043694:9119..9802Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069321-proteinTCONS_00069321-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_497supercontigscaffold_497:9119..9802 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.256439	0.49453	0.163857	0.34515	0.201447	0.298738	0.501083	1.07573	0.655734	0.645367	2.30096	1.01718	1.02542	1.29379	2.32342	2.0989	1.45766	1.04893	5.87688	4.80553	1.72694	2.43559	2.7401	3.89941	1.14334	1.26385	4.66925	5.52458	3.41299	3.24016
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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