TCONS_00069269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069269
Unique NameTCONS_00069269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069269 ID=TCONS_00069269|Name=TCONS_00069269|organism=Clytia hemisphaerica|type=transcript|length=434bp
GTGATGGTGATTGGACAGAAGTAGTAACTGGTTTGtatgtgctgacactt
gttgatgttgacacacttgaacttGCACTGCTTGAGGTAAATACTGAGCT
CGATGAAGGTGTAGATACAGAAGTACTAACGTATGGAGTACTGCTTGTAG
CTTGGCTTGATGAGCTTGCAATCGATGTcgatggagctggtttgcttgta
gatggtgatggtgattggACGGAAGTAGTGACTGGTTTGtatgtgctgac
acttgttgatgttgataCACTTGAGCTTTCACTGCTTGAGGTAAATACAG
AGCTTGAAGATGGTGTAGATACAGAAGAACTAACGTATGGAGTACTGCTT
GTAGCTTGGCTTGATGAGCTTGCGATCGATGTcgatggagctggtttgct
tgtagatggtgatggtgattggACAGAAGTAGNN
Run BLAST on NCBI

transcript from alignment at scaffold_496:627422..627855-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069269 ID=TCONS_00069269|Name=TCONS_00069269|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at scaffold_496:627422..627855- (Clytia hemisphaerica)
GTGATGGTGATTGGACAGAAGTAGTAACTGGTTTGTATGTGCTGACACTT
GTTGATGTTGACACACTTGAACTTGCACTGCTTGAGGTAAATACTGAGCT
CGATGAAGGTGTAGATACAGAAGTACTAACGTATGGAGTACTGCTTGTAG
CTTGGCTTGATGAGCTTGCAATCGATGTCGATGGAGCTGGTTTGCTTGTA
GATGGTGATGGTGATTGGACGGAAGTAGTGACTGGTTTGTATGTGCTGAC
ACTTGTTGATGTTGATACACTTGAGCTTTCACTGCTTGAGGTAAATACAG
AGCTTGAAGATGGTGTAGATACAGAAGAACTAACGTATGGAGTACTGCTT
GTAGCTTGGCTTGATGAGCTTGCGATCGATGTCGATGGAGCTGGTTTGCT
TGTAGATGGTGATGGTGATTGGACAGAAGTAGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043155XLOC_043155Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069269-exon-scaffold_496-1575043694:627422..627855TCONS_00069269-exon-scaffold_496-1575043694:627422..627855Clytia hemisphaericaexon
TCONS_00069269-exon-scaffold_496-1510915933:627422..627855TCONS_00069269-exon-scaffold_496-1510915933:627422..627855Clytia hemisphaericaexon
TCONS_00069269-exon-scaffold_496-1491911889:627422..627855TCONS_00069269-exon-scaffold_496-1491911889:627422..627855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_496supercontigscaffold_496:627422..627855 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.356241	1.08482	0.174666	19.2065	20.7567	158.188	228.318	173.05	206.097	296.86	285.311	12.3886	12.5981	2.5208	3.9425	15.2878	22.4721	62.6069	105.984	59.8514	82.4705	19.2611	31.2562	59.6019	57.2278	4.6984	5.22465	2.54952	3.10669
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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