TCONS_00069055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069055
Unique NameTCONS_00069055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069055 ID=TCONS_00069055|Name=TCONS_00069055|organism=Clytia hemisphaerica|type=transcript|length=838bp
CCTGAGAGAAGCTGTAAGAAACAGGAATTTAGCATCAAACGAGTTGAAGT
TAAAAAGCTTCAGTGATAACTTAAAATTGAATctgaatccaaatttaaca
aattttttCCTCTAAGTTAAAGAGTAGGGTGGAACGGTGCCCCACAACCC
GCACCGTTCGTCTATCGCTACCAACTTAACCTAACAGAAGGTGAATCAAT
AGCGACTGTTACAAATAACCCCATACAGACTACGCACTTTACTGTAATAA
AAAAAGGCCATGGAGTCTAGTGAGacgttttgaaagaaaaaaacttacat
TTGGGGCTTTTATTAAAAGATTCTTGGAATAAATTACATTTGAAATATTC
AGATATTGAAAAGACCAGTTAGGTTAAGTGTTTGATAGTCCGGCCAAAAT
GAACCACCCAACTCTGGGACTAGTACCGAAGATGGGATATCCTTTTTTCG
GTGAGGATATCCGActctgataaaaaaactcacaCACCCTAAAGAATTTG
GTTGCTCATATAAAATTGAACTGAGTGAGAAAAAAACTCAGAGCCACGTT
ATGCCATCCTAAAATCAAATACTTAATAAAAGTATACTTAATAAAATGTT
ATGTATTTTTTTGCTGGGCAAGCGACCGAATTCACATaaatgcaaaaacg
gcgatCATCATTATCGCTTATACCAAttagcaaaaaattaaaaaaaaagc
agaaaacaattttgctttttccgaactttaaaacaattttatgaTAGTGT
TCAAGATCGATTTAATATCCGACATGTGTTCTGTTCAGCAAGCGACCGAA
ttcacaaaaatgcaaaaacggcAAGTATCATTATCGCT
Run BLAST on NCBI

transcript from alignment at scaffold_492:146393..147230

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069055 ID=TCONS_00069055|Name=TCONS_00069055|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at scaffold_492:146393..147230 (Clytia hemisphaerica)
AGCGATAATGATACTTgccgtttttgcatttttgtgaaTTCGGTCGCTTG
CTGAACAGAACACATGTCGGATATTAAATCGATCTTGAACACTAtcataa
aattgttttaaagttcggaaaaagcaaaattgttttctgcttttttttta
attttttgctaaTTGGTATAAGCGATAATGATGatcgccgtttttgcatt
tATGTGAATTCGGTCGCTTGCCCAGCAAAAAAATACATAACATTTTATTA
AGTATACTTTTATTAAGTATTTGATTTTAGGATGGCATAACGTGGCTCTG
AGTTTTTTTCTCACTCAGTTCAATTTTATATGAGCAACCAAATTCTTTAG
GGTGtgtgagtttttttatcagagTCGGATATCCTCACCGAAAAAAGGAT
ATCCCATCTTCGGTACTAGTCCCAGAGTTGGGTGGTTCATTTTGGCCGGA
CTATCAAACACTTAACCTAACTGGTCTTTTCAATATCTGAATATTTCAAA
TGTAATTTATTCCAAGAATCTTTTAATAAAAGCCCCAAatgtaagttttt
ttctttcaaaacgtCTCACTAGACTCCATGGCCTTTTTTTATTACAGTAA
AGTGCGTAGTCTGTATGGGGTTATTTGTAACAGTCGCTATTGATTCACCT
TCTGTTAGGTTAAGTTGGTAGCGATAGACGAACGGTGCGGGTTGTGGGGC
ACCGTTCCACCCTACTCTTTAACTTAGAGGaaaaaatttgttaaatttgg
attcagATTCAATTTTAAGTTATCACTGAAGCTTTTTAACTTCAACTCGT
TTGATGCTAAATTCCTGTTTCTTACAGCTTCTCTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043041XLOC_043041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069055-exon-scaffold_492-1491911889:146393..147230TCONS_00069055-exon-scaffold_492-1491911889:146393..147230Clytia hemisphaericaexon
TCONS_00069055-exon-scaffold_492-1510915933:146393..147230TCONS_00069055-exon-scaffold_492-1510915933:146393..147230Clytia hemisphaericaexon
TCONS_00069055-exon-scaffold_492-1575043694:146393..147230TCONS_00069055-exon-scaffold_492-1575043694:146393..147230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_492supercontigscaffold_492:146393..147230 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.444791	0.70925	0.0854801	0	0.280983	0.201409	0.569073	1.22346	1.74477	1.31683	1.55729	1.62579	1.51337	2.06377	0.929847	0.890905	1.70779	1.15024	0.828021	0.366153	2.34466	2.76938	0.865713	1.18863	0.400641	1.91591	0.954025	0.272416	0.813844	0.335937
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top