TCONS_00069025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00069025
Unique NameTCONS_00069025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00069025 ID=TCONS_00069025|Name=TCONS_00069025|organism=Clytia hemisphaerica|type=transcript|length=656bp
GTCTACGAATGCATTATTGAGGAGGGTAAGATGTCTTTGCTATCCTTGAG
AGATTTTACATTAATATTGTTATGTTTTTGTGGATTTCTGAGGTTCGAGG
AGGCGGCTAACATCACCCTTGGGGACGTAGTATTCAAGCAAATGTACATG
AAAATATTAATTGAAGAATCGAAAACCGATCAATATAGGATTGGAGCCGG
TGTGTTCATTGCCAAGCTAGACTCCCAATTTTGCCCCATCGACTTTATCA
GAAATTATATTAATAGGGCTGAGATCGTTAACGATGATGAGTTTTTGTTC
AGGGGAATGTCcttctttaaaactttgaatgaCCACAAGCTGAAACGTCG
AAATAAGCCTATTTCTTATTCTACTGCAAGATTAGCAGTCCTAAGTCTTA
TGAAACGAATTGGGGTCAATGAAAAGCTATTTGAGACCCACAGCATGCGT
CGTGGAGGAGCCACATGTNNNNNNNNNNNNNNNNNNNTAAAACTTTTAGA
GGCCTAGCCCCAAAGAAACAGAAATCAGTTGTTCCAGATTATCATCCACA
TAGCCATCTTTAGCACTGACAGATTTCCATCTACCGTGTTTCTGGAAAAG
ACGATCCTTTACCCCGTTGTTGGCAGCACATGTGGCTCCTCCACGACGCA
TGCTGT
Run BLAST on NCBI

protein sequence of TCONS_00069025-protein

>TCONS_00069025-protein ID=TCONS_00069025-protein|Name=TCONS_00069025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
VYECIIEEGKMSLLSLRDFTLILLCFCGFLRFEEAANITLGDVVFKQMYM
KILIEESKTDQYRIGAGVFIAKLDSQFCPIDFIRNYINRAEIVNDDEFLF
RGMSFFKTLNDHKLKRRNKPISYSTARLAVLSLMKRIGVNEKLFETHSMR
RGGATCXXXXXXXKLLEA
Run BLAST on NCBI

transcript from alignment at scaffold_491:219678..220333

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00069025 ID=TCONS_00069025|Name=TCONS_00069025|organism=Clytia hemisphaerica|type=transcript|length=656bp|location=Sequence derived from alignment at scaffold_491:219678..220333 (Clytia hemisphaerica)
ACAGCATGCGTCGTGGAGGAGCCACATGTGCTGCCAACAACGGGGTAAAG
GATCGTCTTTTCCAGAAACACGGTAGATGGAAATCTGTCAGTGCTAAAGA
TGGCTATGTGGATGATAATCTGGAACAACTGATTTCTGTTTCTTTGGGGC
TAGGCCTCTAAAAGTTTTANNNNNNNNNNNNNNNNNNNACATGTGGCTCC
TCCACGACGCATGCTGTGGGTCTCAAATAGCTTTTCATTGACCCCAATTC
GTTTCATAAGACTTAGGACTGCTAATCTTGCAGTAGAATAAGAAATAGGC
TTATTTCGACGTTTCAGCTTGTGGtcattcaaagttttaaagaagGACAT
TCCCCTGAACAAAAACTCATCATCGTTAACGATCTCAGCCCTATTAATAT
AATTTCTGATAAAGTCGATGGGGCAAAATTGGGAGTCTAGCTTGGCAATG
AACACACCGGCTCCAATCCTATATTGATCGGTTTTCGATTCTTCAATTAA
TATTTTCATGTACATTTGCTTGAATACTACGTCCCCAAGGGTGATGTTAG
CCGCCTCCTCGAACCTCAGAAATCCACAAAAACATAACAATATTAATGTA
AAATCTCTCAAGGATAGCAAAGACATCTTACCCTCCTCAATAATGCATTC
GTAGAC

Coding sequence (CDS) from alignment at scaffold_491:219678..220333

>TCONS_00069025 ID=TCONS_00069025|Name=TCONS_00069025|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_491:219678..220333 (Clytia hemisphaerica)
CTAGGCCTCTAAAAGTTTTANNNNNNNNNNNNNNNNNNNACATGTGGCTC
CTCCACGACGCATGCTGTGGGTCTCAAATAGCTTTTCATTGACCCCAATT
CGTTTCATAAGACTTAGGACTGCTAATCTTGCAGTAGAATAAGAAATAGG
CTTATTTCGACGTTTCAGCTTGTGGtcattcaaagttttaaagaagGACA
TTCCCCTGAACAAAAACTCATCATCGTTAACGATCTCAGCCCTATTAATA
TAATTTCTGATAAAGTCGATGGGGCAAAATTGGGAGTCTAGCTTGGCAAT
GAACACACCGGCTCCAATCCTATATTGATCGGTTTTCGATTCTTCAATTA
ATATTTTCATGTACATTTGCTTGAATACTACGTCCCCAAGGGTGATGTTA
GCCGCCTCCTCGAACCTCAGAAATCCACAAAAACATAACAATATTAATGT
AAAATCTCTCAAGGATAGCAAAGACATCTTACCCTCCTCAATAATGCATT
CGTAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043013XLOC_043013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069025-exon-scaffold_491-1491911889:219678..220333TCONS_00069025-exon-scaffold_491-1491911889:219678..220333Clytia hemisphaericaexon
TCONS_00069025-exon-scaffold_491-1510915933:219678..220333TCONS_00069025-exon-scaffold_491-1510915933:219678..220333Clytia hemisphaericaexon
TCONS_00069025-exon-scaffold_491-1575043694:219678..220333TCONS_00069025-exon-scaffold_491-1575043694:219678..220333Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00069025-proteinTCONS_00069025-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_491supercontigscaffold_491:219678..220333 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.52485	2.68188	0.297776	0.196832	0	0.0845789	0	0	0.0668824	0.0335927	0.080411	0.052859	0	0.367826	0.0450681	0.145095	0	0.204924	0	0	0.100713	0.161563	1.44415	1.08969	0.0852145	0.0760519	0	0	0.299215	0.755556
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002104Integrase_catalytic
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00069025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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