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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068946 ID=TCONS_00068946|Name=TCONS_00068946|organism=Clytia hemisphaerica|type=transcript|length=1793bp
NNagcatcttttcgtcaatttttattttgtacatgtaaaatacaagatat
attgtactctttttaaccaatcagattgcagatattttttggatcgccga
taatcTTTGTTATCACAACTCCTGATGTGCATGACCGGCTATCATCCAGA
TGACTTGTATCATTTTGGGATCCGTCCTACTATGATGCTAGTCTCATGTT
GATGATATTATTAAATACCATTTAAAAAATTGCTCTTTTGTTTAGAAAAT
CGTAATTGAGGCAAGAATACCTTTCATGGTTAAAAAAAGGTCCACCAAAT
TGTCTTTGGAAGCAGGGAAAAACTCGACTTTTTAGGTGTGACCACCAAGG
ATTCAAGATATCAGGGGGGTTTAGATAGTGCTGGGAACTCATTCTTTGGT
AGGACCTAGACCCCCCTTTGGTTGCACACTATGAATATTGTGGTGGGGGG
GGGTGGATGGTCGGTTCCTTGGGTTGACTGGGTTAGTGACTGATACAAAT
CTTACAGCAGTCATGGATTCTGTTGATATCTTTGTTGATTCCTGGCCAAT
AGATACAATCATTGACTGACTCGGGCCTGCATGCCTGTGCAGCCTTGATG
GGTGGAATGAAGGGCTTGAAAGATCTGATGACGGAGTTCCTTGGGTATCA
CAAGGACTTTGTCTAACATTAATATACCGTTCCAATGCGATAGGCGACTT
CTGGCTTCCCAGAACGGTCACAGATTTGCAGGTAGGCTTTCATGGGATGT
TGGAAAGCGGTCCTGGATGGTTTGTAGCAGTAATGAGTATTCTGTATCAG
TTGATCCATGTTGACAAATCCGATCGAGTGTGAGAAATGTTAGGACATGG
TCGGTTGTTTTGCACATGTTGATGGCAGAAGTGGCATTGATTTATGAATC
GATGTTTGGATTAAAGGAAGTAGTTGTTTTTTAACGCAACACTTGCATGG
TCTCCTTGTACGAGTCAATGGAAGCAAAGCTAGCTGGGTTCCTGGACAAG
GCATCGGGTCCACGCATCCATTTTCTGGGGCAATACTGGATGGTGAATCT
GAATCTGAGGGAATGGCTCTTCAGCTTTATAATTCGAGGATTCTTTACCG
ACCTGAGGTCTCGATCGTTGAAAATACCCAGCAATGGTTCATGATCTGTT
GTGATGATCAGGTCGTTGCAAACAAGGACGAACATCTTGGCGTGATCGAG
TGACAAGGTAACGGCAAGTGCGTCTCCTTCTGTTGGACTGTAACGGCTTT
CGGAGTCAGATGTAAATGTTGAGCCTGCATAGATGAGCAACGATGGTTTC
AATGGTATTTAGGATATCGTTTTCATTGAACGTTAGAAAGTTTGGATGGT
TGTCGATGACATTCGTTTGTGTAGCATCATCACACGCGTTATAAATCATT
GATGTAATCCGGTTTGTTGGGACCCCTGGAAGTGGAAGTTGTTTGTAAAC
GGCTCGATCGATTTTGAATTTACGAAATTGCGGATGTGTCATGTCAGACG
TAATAGAAGGTAGTCTTGCAGATTTTGAGGCGGTTGGTTCTATCGAAGGA
GTCGGATTAGTAGCATGCGTGATCGAGTCTGGGGTACAGCTACTACTGAC
ATGTTGGACGGAGGATCTTCATTATGTCCCCAATAACTGTAATGCCCAGG
TCTCTGAGGAATGACCtgtcaaatatttcaaatgtcATTTGATTTTCTGT
GAAGCTCAAAATTTGAACGATCAAGCTAGCCTGTAACACGGATATTATTT
TGAATATCGCCAtcaataaatgaaaatatttgttattGGTTTG Run BLAST on NCBI transcript from alignment at scaffold_490:55697..57613+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068946 ID=TCONS_00068946|Name=TCONS_00068946|organism=Clytia hemisphaerica|type=transcript|length=1917bp|location=Sequence derived from alignment at scaffold_490:55697..57613+ (Clytia hemisphaerica)
NNagcatcttttcgtcaatttttattttgtacatgtaaaatacaagatat
attgtactctttttaaccaatcagattgcagatattttttggatcgccga
taatcTTTGTTATCACAACTCCTGATGTGCATGACCGGCTATCATCCAGA
TGACTTGTATCATTTTGGGATCCGTCCTACTATGATGCTAGTCTCATGTT
GATGATATTATTAAATACCATTTAAAAAATTGCTCTTTTGTTTAGAAAAT
CGTAATTGAGGCAAGAATACCTTTCATGGTTAAAAAAAGGTCCACCAAAT
TGTCTTTGGAAGCAGGGAAAAACTCGACTTTTTAGGTGTGACCACCAAGG
ATTCAAGATATCAGGGGGGTTTAGATAGTGCTGGGAACTCATTCTTTGGT
AGGACCTAGACCCCCCTTTGGTTGCACACTATGAATATTGTGGTGGGGGG
GGGTGGATGGTCGGTTCCTTGGGTTGACTGGGTTAGTGACTGATACAAAT
CTTACAGCAGTCATGGATTCTGTTGATATCTTTGTTGATTCCTGGCCAAT
AGATACAATCATTGACTGACTCGGGCCTGCATGCCTGTGCAGCCTTGATG
GGTGGAATGAAGGGCTTGAAAGATCTGATGACGGAGTTCCTTGGGTATCA
CAAGGACTTTGTCTAACATTAATATACCGTTCCAATGCGATAGGCGACTT
CTGGCTTCCCAGAACGGTCACAGATTTGCAGGTAGGCTTTCATGGGATGT
TGGAAAGCGGTCCTGGATGGTTTGTAGCAGTAATGAGTATTCTGTATCAG
TTGATCCATGTTGACAAATCCGATCGAGTGTGAGAAATGTTAGGACATGG
TCGGTTGTTTTGCACATGTTGATGGCAGAAGTGGCATTGATTTATGAATC
GATGTTTGGATTAAAGGAAGTAGTTGTTTTTTAACGCAACACTTGCATGG
TCTCCTTGTACGAGTCAATGGAAGCAAAGCTAGCTGGGTTCCTGGACAAG
GCATCGGGTCCACGCATCCATTTTCTGGGGCAATACTGGATGGTGAATCT
GAATCTGAGGGAATNTTTGCATGGTCTCCTTGTATGAGTCAATGGAAGCA
AAGCTAGCTGGGTTCTTGGACAAGGCATCAGGTCCACGCATCCATTTTCT
GGGGCAATACTGGATGGTGAATCTGAATCTGAGGGAATGGCTCTTCAGCT
TTATAATTCGAGGATTCTTTACCGACCTGAGGTCTCGATCGTTGAAAATA
CCCAGCAATGGTTCATGATCTGTTGTGATGATCAGGTCGTTGCAAACAAG
GACGAACATCTTGGCGTGATCGAGTGACAAGGTAACGGCAAGTGCGTCTC
CTTCTGTTGGACTGTAACGGCTTTCGGAGTCAGATGTAAATGTTGAGCCT
GCATAGATGAGCAACGATGGTTTCAATGGTATTTAGGATATCGTTTTCAT
TGAACGTTAGAAAGTTTGGATGGTTGTCGATGACATTCGTTTGTGTAGCA
TCATCACACGCGTTATAAATCATTGATGTAATCCGGTTTGTTGGGACCCC
TGGAAGTGGAAGTTGTTTGTAAACGGCTCGATCGATTTTGAATTTACGAA
ATTGCGGATGTGTCATGTCAGACGTAATAGAAGGTAGTCTTGCAGATTTT
GAGGCGGTTGGTTCTATCGAAGGAGTCGGATTAGTAGCATGCGTGATCGA
GTCTGGGGTACAGCTACTACTGACATGTTGGACGGAGGATCTTCATTATG
TCCCCAATAACTGTAATGCCCAGGTCTCTGAGGAATGACCtgtcaaatat
ttcaaatgtcATTTGATTTTCTGTGAAGCTCAAAATTTGAACGATCAAGC
TAGCCTGTAACACGGATATTATTTTGAATATCGCCAtcaataaatgaaaa
tatttgttattGGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068946-exon-scaffold_490-1491911889:55697..56703 | TCONS_00068946-exon-scaffold_490-1491911889:55697..56703 | Clytia hemisphaerica | exon |
| TCONS_00068946-exon-scaffold_490-1510915933:55697..56703 | TCONS_00068946-exon-scaffold_490-1510915933:55697..56703 | Clytia hemisphaerica | exon |
| TCONS_00068946-exon-scaffold_490-1575043694:55697..56703 | TCONS_00068946-exon-scaffold_490-1575043694:55697..56703 | Clytia hemisphaerica | exon |
| TCONS_00068946-exon-scaffold_490-1491911889:56828..57613 | TCONS_00068946-exon-scaffold_490-1491911889:56828..57613 | Clytia hemisphaerica | exon |
| TCONS_00068946-exon-scaffold_490-1510915933:56828..57613 | TCONS_00068946-exon-scaffold_490-1510915933:56828..57613 | Clytia hemisphaerica | exon |
| TCONS_00068946-exon-scaffold_490-1575043694:56828..57613 | TCONS_00068946-exon-scaffold_490-1575043694:56828..57613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_490 | supercontig | scaffold_490:55697..57613 + |
Blast
The following BLAST results are available for this feature:
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