TCONS_00068749 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068749
Unique NameTCONS_00068749
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068749 ID=TCONS_00068749|Name=TCONS_00068749|organism=Clytia hemisphaerica|type=transcript|length=3212bp
TGTATTTTGTGAAGAGTCGTTTGATGGAACGCTTGATTGCTTTCGAATGA
GAACCCACAGGTGCTGCTCACCCTCTGCATGCTTCCTTACCTCATCTGCT
GCAGTTTTTCCCATTCttgcaaaagcatttttttgttgctgcaacaaaaa
tttcagatttcaatcttcaccaaaatatttttttataaaattggtGTAAA
GAAGAGAGGTGGTTGTTGGAAGCAAAGATGCATAAGATTTGCTTGTTAGC
CGTACTTTTTGCGGCGGTCTATGCTAGaccatattttgaccaaaacagTG
AGTCACACTTCACTGTCCACGAGAAACCACCAGAACTTGTTGTCAATGCT
GGACCAGAAGGAGTCAAAGTCCAAGCTAAACCATCCAAACTTCAAGTTGT
TGAATATCCAGGACATCAAGTTGCTGCCCAAAAACGCGATGATATCACCA
ACTGTTACTTCGGTGGTGAAGGTTGTGGTGGACACGGTGGCCTCGGTTTA
GGAGGCTATGGAGGCCACGGATTCGGTGGCGGATATGGCGGTCACGGCTT
AGGCGGTGGCTATGGCGGTTATGGCCACGGTGGTGGTTATGGCGGAAATG
GAGGCGGTTATGGCGGTGGTTATGGCGGAAATGGAGGCGGTTATGGCGGT
GGTTATGGCGGACACGGCTTCGGTGGTGGATACGGAGGATACGGTGGTCA
TGGATGCGTTGGACATGATTGTGCATTCAGCGGATGTCTTTACAATGGAG
GTGGTTACGGATGTGGCGCCCACCACGATCACACCACATATGTGCCATCA
CACACTCCCCCCGTTCACGTTGGTCCAAACGCTCCACCAATTCACGTTGG
CCCACACGTTCCAGCTGTTCATGTCGGACCACATGTACCAAGCATCCATT
ACGGTACTCATGCTCCATTATACCATGTTGGACCACACGTTCCATTCGTT
CACATGCCACCACCTGTTCACACTGTCCATGCAGGACCCATGGGACCACC
AGTGCACGTCACCTCACCACCAACCGTTTACCATCAACCACCAGTTGTCT
ACCATCAACCTCATGTTGTTGGACATGCTGCAGACCACGACTTCGGACAT
CATGTTGGAGTTGGAGGAGATTATGGAGGTCATTACGGATCTGGATACGG
ATGGGGAGGTCACGGTGGATACGGAGGATATGGCGGCCACGGATTCGGTG
GTGGTTCCGGTGGTGGTTTCGGTGGTGGCTATGGAGGTGGCTATGGAGGC
CACGGACTCGGTGGCGGATATGGCGGCCACGGCTTGGGTGGTGGTTATGG
AGGTTATGGCCATGGTGGTGCCGGTTATGGTGGTTTGGGTGGTCATGATG
GAGAATGCTGTGAAGCTGGAGGTTATGGTCATGGATACAAGAGAGCTATC
AAACAAAAACGATCGATTGAAGGTGAGTCCAATGAATCTTCTTTTGACGA
AGACAAACAAACCACAACTGACTTGACTGAGAAGACGAATAACATCCAAA
AACGTGACGCTCCATATTACGGTTGGCATCCATTCCCTGCTAGTGTTCAT
GTTGGTCCCCATACTCCACCCATTCACATCGGTCCCCACTACCCACCTGT
ACATATTGGACCCCATGTCCCTGCTGTCCATATTGGTCCCCATGTCCCTT
ACATTAACATCCCTGCTCATGTACCAGCTATTCACGTCCGTCCACACGTC
CCCGCTGTCCATATCTCTCCCCCAGTCCCCATCATCAACGCAGGCAACCA
CGTTCCATCAGTGCATGTCACCTCACCACCAACAGTGTACCACAGACCAC
CCATTGTCATTCATCAACCTCATATTGTGCACGGTCCCCTTCACCACGAT
TACGGTCACGAAGTTTACGGTAACGGTTTTGGCTTTGGTGGTGGTTATGG
TGGTGGTTATGGTGGTGGTTATGCTGGTTATGGTGGTCATCAACATGGAC
TCACCATGGAGCATGATGGTGGTTTTGGACATGGATGGGGTAAAAGAAGC
GACATCCCTTCATCACCAGCTGAAAGTGGTAAGAAACAACTCACATTAAA
AGCTTTTTCACGACGAAGACGTCAATTAATGGGAGGAAATACTGATGGGA
GTGATTCCGTCATTTTCGTTCATCCTGGAGGAGGCCAAACTCCAGTCAGT
TCTGGTGCTCAGCTGAACACTCAACTTAACAATGATAGTCCTTTAGCTGG
CTTGATGCCAAACCAAGGGCAATCTAATGCAGCTATTCACACTCAATCAC
CTCCACAAATGGAAACTCCAGCTCTTCCACAACAAAGTCAAAATCAGGCC
TTCACCAAGTCTGGCTTGTCCAATCTTGGTTCTATTACCAACTCTATGAG
CAACAATGCTGATCGTGATCGAGAGCTCCAGAATCTGGTCGGTAGCCTAT
CAGGAGGTCTCAGTGGAGGTCTTTCTAACGGAGGATTACCAGCAGGTTTG
GGTAACCTTGCCAACCTTGCTCAACAATCCAACTCCAATGGCAACACCAT
GGAAGTTCAAGGAAGTCCACAACAAGAGCCTTTGAACATCCAATCATCCG
CCCCTCAACATGATGAAGGTGTCCAGAGTGAAAGCCCCAACATGAACATC
GGTGGATTGCAAGATGGTGGAAACTACCCAGAAGAAGCGCCTCACAACGA
GGAACCACCTCATGGAGAGGAACAATCAGAGGGTTCCAATAATAACCAAG
GTAACGATTACCGCAGATCGGGCGTTCCCACCCAAGAACACGCCTCTTTC
TATGAAGATGAGGCTGATGAAGTTGACGATGTTGATGACTCCATGGAACG
TGACACGAAATCCACCATCCCACACGAAGATGACGATTTCATAGACANAA
CGCGACACGAAATCCACCATCCCACACGAAGATGACGACCTCATAGACTA
TGACATTCACGAACGTGTCCATAAAGACGTTATTCCGAGACCGGAAGATT
TTAACTAACTTTGACAAGACTATGACTGTATGACGAGTTGACTTAACTTA
AGctTAAAGCAGTTGTCCACGCCAACATCAGGCAGTCAGAAAAGCTACGA
CTGGAGGTCATAAGGTGAGAACGCACCGAAAGATCTATCCAGCACCACAA
GAGGCTTCCAAGACTCTGACGACTGTATCTATTAGCAACAATCACTACGA
ATCTTTTATAAATAACATagctttatttttaaaatcctGTAAATTTATAA
TTCTAAACAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_49:130931..134828+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068749 ID=TCONS_00068749|Name=TCONS_00068749|organism=Clytia hemisphaerica|type=transcript|length=3898bp|location=Sequence derived from alignment at scaffold_49:130931..134828+ (Clytia hemisphaerica)
TGTATTTTGTGAAGAGTCGTTTGATGGAACGCTTGATTGCTTTCGAATGA
GAACCCACAGGTGCTGCTCACCCTCTGCATGCTTCCTTACCTCATCTGCT
GCAGTTTTTCCCATTCttgcaaaagcatttttttgttgctgcaacaaaaa
tttcagatttcaatcttcaccaaaatatttttttataaaattggtGTAAA
GAAGAGAGGTGGTTGTTGGAAGCAAAGATGCATAAGATTTGCTTGTTAGC
CGTACTTTTTGCGGCGGTCTATGCTAGaccatattttgaccaaaacagTG
AGTCACACTTCACTGTCCACGAGAAACCACCAGAACTTGTTGTCAATGCT
GGACCAGAAGGAGTCAAAGTCCAAGCTAAACCATCCAAACTTCAAGTTGT
TGAATATCCAGGACATCAAGTTGCTGCCCAAAAACGCGATGATATCACCA
ACTGTTACTTCGGTGGTGAAGGTTGTGGTGGACACGGTGGCCTCGGTTTA
GGAGGCTATGGAGGCCACGGATTCGGTGGCGGATATGGCGGTCACGGCTT
AGGCGGTGGCTATGGCGGTTATGGCCACGGTGGTGGTTATGGCGGAAATG
GAGGCGGTTATGGCGGTGGTTATGGCGGAAATGGAGGCGGTTATGGCGGT
GGTTATGGCGGACACGGCTTCGGTGGTGGATACGGAGGATACGGTGGTCA
TGGATGCGTTGGACATGATTGTGCATTCAGCGGATGTCTTTACAATGGAG
GTGGTTACGGATGTGGCGCCCACCACGATCACACCACATATGTGCCATCA
CACACTCCCCCCGTTCACGTTGGTCCAAACGCTCCACCAATTCACGTTGG
CCCACACGTTCCAGCTGTTCATGTCGGACCACATGTACCAAGCATCCATT
ACGGTACTCATGCTCCATTATACCATGTTGGACCACACGTTCCATTCGTT
CACATGCCACCACCTGTTCACACTGTCCATGCAGGACCCATGGGACCACC
AGTGCACGTCACCTCACCACCAACCGTTTACCATCAACCACCAGTTGTCT
ACCATCAACCTCATGTTGTTGGACATGCTGCAGACCACGACTTCGGACAT
CATGTTGGAGTTGGAGGAGATTATGGAGGTCATTACGGATCTGGATACGG
ATGGGGAGGTCACGGTGGATACGGAGGATATGGCGGCCACGGATTCGGTG
GTGGTTCCGGTGGTGGTTTCGGTGGTGGCTATGGAGGTGGCTATGGAGGC
CACGGACTCGGTGGCGGATATGGCGGCCACGGCTTGGGTGGTGGTTATGG
AGGTTATGGCCATGGTGGTGCCGGTTATGGTGGTTTGGGTGGTCATGATG
GAGAATGCTGTGAAGCTGGAGGTTATGGTCATGGATACAAGAGAGCTATC
AAACAAAAACGATCGATTGAAGGTGAGTCCAATGAATCTTCTTTTGACGA
AGACAAACAAACCACAACTGACTTGACTGAGAAGACGAATAACATCCAAA
AACGTGACGCTCCATATTACGGTTGGCATCCATTCCCTGCTAGTGTTCAT
GTTGGTCCCCATACTCCACCCATTCACATCGGTCCCCACTACCCACCTGT
ACATATTGGACCCCATGTCCCTGCTGTCCATATTGGTCCCCATGTCCCTT
ACATTAACATCCCTGCTCATGTACCAGCTATTCACGTCCGTCCACACGTC
CCCGCTGTCCATATCTCTCCCCCAGTCCCCATCATCAACGCAGGCAACCA
CGTTCCATCAGTGCATGTCACCTCACCACCAACAGTGTACCACAGACCAC
CCATTGTCATTCATCAACCTCATATTGTGCACGGTCCCCTTCACCACGAT
TACGGTCACGAAGTTTACGGTAACGGTTTTGGCTTTGGTGGTGGTTATGG
TGGTGGTTATGGTGGTGGTTATGCTGGTTATGGTGGTCATCAACATGGAC
TCACCATGGAGCATGATGGTGGTTTTGGACATGGATGGGGTAAAAGAAGC
GACATCCCTTCATCACCAGCTGAAAGTGGTAAGAAACAACTCACATTAAA
AGCTTTTTCACGACGAAGACGTCAATTAATGGGAGGAAATACTGATGGGA
GTGATTCCGTCATTTTCGTTCATCCTGGAGGAGGCCAAACTCCAGTCAGT
TCTGGTGCTCAGCTGAACACTCAACTTAACAATGATAGTCCTTTAGCTGG
CTTGATGCCAAACCAAGGGCAATCTAATGCAGCTATTCACACTCAATCAC
CTCCACAAATGGAAACTCCAGCTCTTCCACAACAAAGTCAAAATCAGGCC
TTCACCAAGTCTGGCTTGTCCAATCTTGGTTCTATTACCAACTCTATGAG
CAACAATGCTGATCGTGATCGAGAGCTCCAGAATCTGGTCGGTAGCCTAT
CAGGAGGTCTCAGTGGAGGTCTTTCTAACGGAGGATTACCAGCAGGTTTG
GGTAACCTTGCCAACCTTGCTCAACAATCCAACTCCAATGGCAACACCAT
GGAAGTTCAAGGAAGTCCACAACAAGAGCCTTTGAACATCCAATCATCCG
CCCCTCAACATGATGAAGGTGTCCAGAGTGAAAGCCCCAACATGAACATC
GGTGGATTGCAAGATGGTGGAAACTACCCAGAAGAAGCGCCTCACAACGA
GGAACCACCTCATGGAGAGGAACAATCAGAGGGTTCCAATAATAACCAAG
GTAACGATTACCGCAGATCGGGCGTTCCCACCCAAGAACACGCCTCTTTC
TATGAAGATGAGGCTGATGAAGTTGACGATGTTGATGACTCCATGGAACG
TGACACGAAATCCACCATCCCACACGAAGATGACGATTTCATAGACANAA
CGCGACACGAAATCCACCATCCCACACGAAGATGACGACCTCATAGACTA
TGACATTCACGAACGTGTCCATAAAGACGTTATTCCGAGACCGGAAGATT
TTAACTAACTTTGACAAGACTATGACTGTATGACGAGTTGACTTAACTTA
AGGTACGCTGAAAGCCTTGAATGGTcaaagaagaaaagtttgaagagtGT
AGTTGAAGTAATAAACCCTTGACTTCCACTTTTTATCTATTTCTTAATAA
TAGTCTTCCCTTTCTTTCTTTTAGTCATAGCGTACTTTTTATCTTACTAA
ACATATTCAAGTAATTCTTTTGACACAATATCAGATAGTTTAGAAAGGGT
TTATTACTTTCGCATACGCACAAACAAAATCACACACACAAACACACACA
GCATGTCATACATCATTCAacaccgcactgtcatcatcaTGGTCAATTCC
AATCCAACCACAGACCCAATGAGGCGCtgatttcaccaaaattttcaaaa
taagcaCAGTAATATCATGTTGAGGGGCGGAAAGATCTGACGAAACATCG
CTAATTCATTGGGGCTGTAACGGGAGAGGAATCTAGAACCAAGATGGCGG
CTTTGCGTTTTGGTGATATTGTCCGCCTACagacttttcttctttttcct
tcaTTTTCCTGGAAATCTCAATTTACATACATTAACATTTTACACAATGA
ATTCAACTGAAAATTGGttaaaaatatgattaaaaataatctgaaaaaga
CTTATCCGACTTTTTATCTTAGCATACCGTCTGCTTTTTAAACGAAGCCA
CGTATCAATAAAAACTCttacattttttatctttttagctTAAAGCAGTT
GTCCACGCCAACATCAGGCAGTCAGAAAAGCTACGACTGGAGGTCATAAG
GTGAGAACGCACCGAAAGATCTATCCAGCACCACAAGAGGCTTCCAAGAC
TCTGACGACTGTATCTATTAGCAACAATCACTACGAATCTTTTATAAATA
ACATagctttatttttaaaatcctGTAAATTTATAATTCTAAACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042879XLOC_042879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068749-exon-scaffold_49-1491911889:130931..133932TCONS_00068749-exon-scaffold_49-1491911889:130931..133932Clytia hemisphaericaexon
TCONS_00068749-exon-scaffold_49-1510915933:130931..133932TCONS_00068749-exon-scaffold_49-1510915933:130931..133932Clytia hemisphaericaexon
TCONS_00068749-exon-scaffold_49-1575043694:130931..133932TCONS_00068749-exon-scaffold_49-1575043694:130931..133932Clytia hemisphaericaexon
TCONS_00068749-exon-scaffold_49-1491911889:134619..134828TCONS_00068749-exon-scaffold_49-1491911889:134619..134828Clytia hemisphaericaexon
TCONS_00068749-exon-scaffold_49-1510915933:134619..134828TCONS_00068749-exon-scaffold_49-1510915933:134619..134828Clytia hemisphaericaexon
TCONS_00068749-exon-scaffold_49-1575043694:134619..134828TCONS_00068749-exon-scaffold_49-1575043694:134619..134828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:130931..134828 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0256317	46.3466	59.0615	28.4229	32.0547	24.6394	20.0943	102.701	91.695	62.4469	162.32	108.469	99.5394	0	0.0810361	62.2742	66.947	51.9958	51.3195	100.1	120.878	9.43217	3.2149	0.0808573	0.164762
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068749 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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