TCONS_00068734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068734
Unique NameTCONS_00068734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068734 ID=TCONS_00068734|Name=TCONS_00068734|organism=Clytia hemisphaerica|type=transcript|length=802bp
TTCTCGGCGATCGAAGAAAGACGGGAAACGAGTTTCTCAATGGTTTCGCA
CGCAAAGCTGCTTGATGGTCTTTGCGCAGATTGGGACAAGCTGCGCGCAT
GCGTCAGAAATGCGTGTTTAAATGTCTCgtgttttcatttcaaaatcctC
CCTCTTGCAAAGTTAAGCTaatcatttctatttctatttttgctTTCACG
TGAAAACGAGATGAATCGACATCAGCATTGGAGAAGATAATGGGGTTCAA
CGATATTGTTCGATACGGTTCATGCATGGCTATTCTCATTACAAGCAGCG
AAGTTGGCCACTTTTATGGTTACACGCGATCTTTAATGATGACTGAACTT
TGAATAGAGATTATGGAACAACACTGTTTTTAACGTATTTTGTGTATTTG
CTTGTTATTTACAAAGGAGGACCTTTAAACTTCGGAGGTCGGGGTGACTG
ATGCACTCGGTTCGGAGATAGTGTTTCCTCCAGAAACAGCCAATGGGGGT
TTTGCGCTACCTACTAGTCACCGTTAGTACTAatgtacccctttttcatt
gtAATAGTGAATAATATTCtatttatcgatattttttattcTGACCGGTC
GTGCGGAACTATTCATATGTAACCTATTCAATTTTATCGTCTGATAATTG
TTTTTTTACATTGCTTATTGGCACGATTGTGGAAGGACCGATGACATTTA
TCCTGTTATTCTCCTAACATTTTGCATGGTTATTGGAAATCATGGACATT
CAATAATTAGTATATTTTAATTCgttctaaagtctgtccagatataattg
gc
Run BLAST on NCBI

transcript from alignment at scaffold_489:53196..53997

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068734 ID=TCONS_00068734|Name=TCONS_00068734|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at scaffold_489:53196..53997 (Clytia hemisphaerica)
gccaattatatctggacagactttagaacGAATTAAAATATACTAATTAT
TGAATGTCCATGATTTCCAATAACCATGCAAAATGTTAGGAGAATAACAG
GATAAATGTCATCGGTCCTTCCACAATCGTGCCAATAAGCAATGTAAAAA
AACAATTATCAGACGATAAAATTGAATAGGTTACATATGAATAGTTCCGC
ACGACCGGTCAgaataaaaaatatcgataaataGAATATTATTCACTATT
acaatgaaaaaggggtacatTAGTACTAACGGTGACTAGTAGGTAGCGCA
AAACCCCCATTGGCTGTTTCTGGAGGAAACACTATCTCCGAACCGAGTGC
ATCAGTCACCCCGACCTCCGAAGTTTAAAGGTCCTCCTTTGTAAATAACA
AGCAAATACACAAAATACGTTAAAAACAGTGTTGTTCCATAATCTCTATT
CAAAGTTCAGTCATCATTAAAGATCGCGTGTAACCATAAAAGTGGCCAAC
TTCGCTGCTTGTAATGAGAATAGCCATGCATGAACCGTATCGAACAATAT
CGTTGAACCCCATTATCTTCTCCAATGCTGATGTCGATTCATCTCGTTTT
CACGTGAAagcaaaaatagaaatagaaatgattAGCTTAACTTTGCAAGA
GGGaggattttgaaatgaaaacacGAGACATTTAAACACGCATTTCTGAC
GCATGCGCGCAGCTTGTCCCAATCTGCGCAAAGACCATCAAGCAGCTTTG
CGTGCGAAACCATTGAGAAACTCGTTTCCCGTCTTTCTTCGATCGCCGAG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042875XLOC_042875Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068734-exon-scaffold_489-1491911889:53196..53997TCONS_00068734-exon-scaffold_489-1491911889:53196..53997Clytia hemisphaericaexon
TCONS_00068734-exon-scaffold_489-1510915933:53196..53997TCONS_00068734-exon-scaffold_489-1510915933:53196..53997Clytia hemisphaericaexon
TCONS_00068734-exon-scaffold_489-1575043694:53196..53997TCONS_00068734-exon-scaffold_489-1575043694:53196..53997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_489supercontigscaffold_489:53196..53997 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.63209	7.2322	4.68941	4.52332	5.06407	3.48282	12.1736	10.9549	21.5556	14.3797	12.9705	19.7213	3.42419	5.02758	5.16556	4.18563	5.55844	4.60604	3.07719	2.66492	2.80296	3.21056	5.97676	6.92032	0.128468	0.126073	0.205158	0.261525	4.29145	3.61814
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top