TCONS_00068638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068638
Unique NameTCONS_00068638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2825

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068638 ID=TCONS_00068638|Name=TCONS_00068638|organism=Clytia hemisphaerica|type=transcript|length=2825bp
CTAAGATTAACGTAAACAACCCAAGAGAACGAAGTCAAACACCCTTCTGT
CTTCTGCTTGCTTGGACAGCTACTGTACTTTTCTCTCTCTTTTATGATTA
GcatattaaaacatttttatttacgATAATTCTCAAACgatatgattatt
ttattgattttagcaattgaccaaaaaaaaagatatatgaGATTACATTT
TACGTTTGAAAGATGGGGAAGCTTGCATCAGATACTACTGTTGACCAAAA
ACCAAAGGAAAAACCAAAaacgaagaaagaaaaacacatGTATCCCAGAA
AGCTAGTCATTCGAAGACTTCCAACAAGTTTGAACGAGGAAACGTTGAAA
GAAGAGCTAGGAAACATTCCAGAATATGAATACTTCTATTTCACTACTGG
TGACACAAGCTTTGGTATGCAACCATATTCAAGAGCATACATTagcttca
aaaattatgacGATGTTTACGATTTTCGAAATAAGTTTGATGGACATCTT
TTCTATGACACAAGAGGTCGTGAATTTAGTGCGGTGGTTGAGTTTGCACC
GTGTCAACTTGTACCCAAAGAGAGACAAAAGAAAGACCACAAAACAGGAA
CACTGGAAAAGGATCCAGAATTCATTCAATTCTTGGAATCGTTGGACAAA
GAAGAAGAGAAGCTACCGAGTGCTGAGATCTACATCGAAGAAATTGAAGC
AGCCAAAGCTATCGATAAAAACAAGGTGAAGTTTACCACGCCATTGATCG
ATTATTTGAAAGAGAAGAGAGATGTTCGGTTAGCTGCCATTGCCCAGaaa
gagAAGGAACGAAAAGAAAGGGAACAAAAGAGAAGAGAACAACGTGACAA
GAAgcaaaacaaacacgaagaacAACGCAGCGAAAGAAAATCTACCGACA
GATCATCCAATCGTGATTCGAAGAAAAATGACGAACGAAAAGACAAATAC
AAGGACAAAGAGAAAGAGGAAAGCAACAGCAAGTCGGACAAACGAAAAGA
CAAGAAAGACAACAATACAAAACAACAAGACAGGTCGTCCTCAGCAAGCA
ACAACAGTAAAGATAAAGACGATCATCGcgagaaagagaagaaagaacGC
CTGGGCGAAGGCGGAGGCGGGGGCGGGGGCGGTAAACGTGGACCACGTGA
ACGAGCCAGCGACAGAAAAAAAGGTCGTAACAACAATGACAACCGACAAA
ATGAGCAACGCTCCTTATCATCAGCCAAAAACGAGAAATATCCGTCCTCG
TCAAAAGATCAAAGTAAAGACACGACAAAAGACAAaagttcttcttcttc
atcgtcGTCAAATAAAGATTCGTccaaagaatcttcgaaaaaagaaaaca
gacgCTTGACACCTCCCGAAAAAGGGTCCAGAGGAGAATCACCAGAGAAG
TCAGCAAAGAAAGACAAACGGAACAAGGAACGTGACACCAGCGACGATAC
ACCAACCTCGTCCTCCACAACCGCATCTCAGGCCGCATCTAAAGACAATA
CGCCAGAAGCTGTAAACTCCTCTGAGAAAGCAAGCCCGAATAAGAATAAT
CGAAAGCCACGACCTGAGATGAAAATCTACCGACCACCATCAGAACGGCC
CTCTTCTGGTTCTTCTAaaaatgtgacgtcatcttCAGAGAAAGATTTCG
ACGACCGTTCATCCAAGGATTCGTCATCCGACAGCAAACGAGGAAGTAGT
ACGTCTTCCAAATCAAATGACGGTGGAAGTAAAAACAACAAGCCACCGCG
ATACCGTGACGATCGCCGATCCAATCGTGATCGTGATCGTGATCGTGATC
GTGATAGGTATTACGATAGGCACGATCGATACAACGACAGTCACGAAAGT
CGACATTATTCCGATAACCGAAACAGCAAACGGGGTTCCGATTATAACGA
AAAATCGGGAAACCGGGATAAAGAGAAACGTGACGATTCTTCTTCAACAC
GACCtcaatcttccaaaaacaaaaataacgaATCTTCGAGTTCGACAAAA
AAATCTTCATCACAGAAAGATGTCTCGGTCACCGTGAAAAAAGACGTTGA
CAAAGAGCGCGAGAGAGAATTAGAACAAGAACGCTATCGAATGAATTGGC
TaggtaaagaataaaaagacatTGTATTTTATCAGAGGGGTACTAGGATT
GGcaaatgaggggtatgtgcggacgggacctccggaAACCGATGCTTAgt
gagactgatttttgctgaaaatacagactttttgaaaaaatctcttcgat
tttcggaaaatttcctacccttagatGTTAGAgagcttttttacgttttt
tttgtcTCGAAACcgaaaaaaatcctaaaaatcgtgaattagAGCAACTA
ATTAAACATTTTCTAATGTTTGCAACCCTAGGAGAGAcattgaaaggtga
aaaaccgacctttaccGTCTGCACATACGCAGCACCTATTTTTGTCTAAT
TACTCCCCCTCCCCCGTATTGTATAAAGTATTCTACCTTTAActtagttt
ttatttctgctCTGTATATTtactgaaattttgtttttgatctcTTTGTG
AATCATTGAATTATCTATcattgaattgaattttgtGTTGTGATTTGTAT
AAatattctttgttttcattGAACATTTTTATCGCAATTTCTTTGTGAAT
CCTGATTATTTTACTGGTTAAGTACACCAGGTTTTAAATCCAAAATCTTT
TGTCACATTTTTTTGTCTGTTAATTCATATGCTGAATAATAATAGAATTA
ATCAAATAATCATTACGCTAGTTGAAAACTTTGAACGCAAATAACGCCCT
CCAATTGTGTATAAATGAGTGCCGG
Run BLAST on NCBI

transcript from alignment at scaffold_486:296621..309567-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068638 ID=TCONS_00068638|Name=TCONS_00068638|organism=Clytia hemisphaerica|type=transcript|length=12947bp|location=Sequence derived from alignment at scaffold_486:296621..309567- (Clytia hemisphaerica)
CTAAGATTAACGTAAACAACCCAAGAGAACGAAGTCAAACACCCTTCTGT
CTTCTGCTTGCTTGGACAGCTACTGTACTTTTCTCTCTCTTTTATGATTA
GCATATTAAAACATTTTTATTTACGATAATTCTCAAACGATATGATTATT
TTATTGATTTTAGCAATTGACCAAAAAAAAAGATATATGAGATTACATTT
TACGTTTGAAAGATGGGGAAGCTTGCATCAGATACTACTGTTGACCAAAA
ACCAAAGGAAAAACCAAAAACGAAGAAAGAAAAACACATGTATCCCAGAA
AGGTAAATTTCGAAACACACGTTTGTATTATATAAAGAACATCAAAATTT
TTTGAATCCTTTGAATGCTCTTAACTTTTTTGAGTTAAAAGCCTAAAAAT
GTTCTTAACATTTTCATCACCATTTTCTGAGTATTTTTGTCGAAATTTGT
CCATTTTCCTAAGAAATCGGGTGTATCGATTCCACAAATCCTTAGAATTC
TTTGTGCGTTCTTAATTCCTTAATTTTTGACAATCGAAGCCATAATATGT
TCTTTAGATGGTACATAGTTTGTTCTTATTAAAAAATGTGTGAAGAACAC
TTTTTTGATTTGTTGTTGTTTAAAGTAATGTTTTTTTTGCGGAGAAACAC
GGTTTTCTTGACTGGATTTTTGTCGTTATTTTGTTGAAATAATTTATATG
ATTGGATAAGTTGTTTTTTTTCAAAATAATTTTAATTTTTGTATTTGTAG
CTAGTCATTCGAAGACTTCCAACAAGTTTGAACGAGGAAACGTTGAAAGA
AGAGCTAGGAAACATTCCAGAATATGAATACTTCTATTTCACTACTGGTG
ACACAAGGTTTGATGGAAATTTCATTTATTATTGCCCGCCCTACATCCCG
CCATTAAGTAATGGTGTCTTTTGGGTATTTCCCTCACTTTTTTTTCCCAT
GAAAAAAAAAAAAAAAAATAAACCATGGAACTACGTACTTTTTTTCTTGT
GTTGGTGGGATGGAGCATGTTGCATTGCACCAACGCGAAAAAAAGTTCTC
GCGTCCCCAAGCCTTTAGATATACTGATATTTTAGAACTGTGACCCAACA
CTTTTCATTTGGTTTTTAGCTTTGGTATGCAACCATATTCAAGAGCATAC
ATTAGCTTCAAAAATTATGACGATGTTTACGATTTTCGAAATAAGTTTGA
TGGACATCTTTTCTATGACACAAGAGGTATAAATTTAACTGTTATAAGAG
TGTTATCCTATTAACGATACACCAAGACTTCTCTTTGTTTTGTGTCAAAG
GTCAAAGGAGGTGTGTACTTTGGAAGGGCCAAAATTGACCAATATTTGGT
TCCTCGTCCAAAAAGTAACGAATATTCATGATGAAATGGATGAAAACCCA
TAATGCTATAAAAGAGAAAAGCGTACAGTGTACTTTGACCATATGACAGC
TTCAGTAAAAATAAAATAAAACTTAATCCGAATATTATTGACAAACAACA
AAATTTTCATTTTTTGAAAAACTTTTGTTGTTTGTGATCTGACTTCACAT
TGATCCATGGCAAAATCAATTTTAGAATTAAGTTTTATCTTGTACAATGT
ACTGATACTCCTGATTTTCCACAGGTCGTGAATTTAGTGCGGTGGTTGAG
TTTGCACCGTGTCAACTTGTACCCAAAGAGAGACAAAAGAAAGACCACAA
AACAGGAACACTGGAAAAGGGTGAAAATGCTTTCTTTACTTATTTACATC
AAAAGAATCCTTCGTCATTTGTGTAGTGCTATTTACAGTACACATATTAC
AGTACACTCGTCAAAAACCGGTAAAACCTACTCCTCATTGGAGAAATCGG
CTTAAAACTGTCCAAGTGAGAAGAATATCCACATTCCCATTGGGTGGGAT
TTGGCCCCTTTATTTTATCCTTGATAAAACGGGGTGTATTCTTTCTAACA
AATATTTGTTGTTTATCTAATTCTATCATTTGTTCCACACTTTACTCCCA
AATCAATCAACAAACAACCACGACAATTCATGATATGCACCANTCAAAAA
TTATGACGATGTTTACGATTTTCGAAATAAGTTTGATGGACATCTTTTCT
ATGACACAAGAGGTATAAATTTAACTGTTATAAGAGTGTTATCCTATTAA
CGATACACCAAGACTTCTCTTTGTTTTGTGTCAAAGGTCAAAGGAGGTGT
GTACTTTGGAAGGGCCAAAATTGACCAATATTTGGTTCCTCGTCCAAAAA
GTAACGAATATTCATGATGAAATGGATGAAAACCCATAATGCTATAAAAG
AGAAAAGCGTACAGTGTACTTTGACCATATGACAGCTTCAGTAAAAATAA
AATAAAACTTAATCCGAATATTATTGACAAACAACAAAATTTTCATTTTT
TGAAAAACTTTTGTTGTTTGTGATCTGACTTCACATTGATCCATGGCAAA
ATCAATTTTAGAATTAAGTTTTATCTTGTACAATGTACTGATACTCCTGA
TTTTCCACAGGTCGTGAATTTAGTGCGGTGGTTGAGTTTGCACCGTGTCA
ACTTGTACCCAAAGAGAGACAAAAGAAAGACCACAAAACAGGAACACTGG
AAAAGGGTGAAAATGCTTTCTTTACTTATTTACATCAAAAGAATTCTTCG
TCATTTGTGTAGTGCTATTTACAGTACACATATTACAGTACACTCGTCAA
AAACCGGTAAAACCTACTCCTCATTGGAGAAATCGGCTTAAAACTGTCCA
AGTGAGAAGAATATCCACATTCCCATTGGGATTTGGCCCCTTTATTTTAT
CCTTGATAAAACGGGGTGTATTCTTTCTAACAAATATTTGTTGTTTATCT
AATTCTATCATTTTTTCCACACTTTACTCCCAAATCAATCAACAAACAAC
CACGACAATTCATGATATGCACCACTGCAATATGACTTCAGGAAATTATG
CTACTTTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTCTTTTGTTTA
AGTGACGTATTGGGTGCAAAATTTTCAAAGTTCTCAGAAGACTCTCCAGT
GGTGTATTCTCAACTTCAGTTGAGTTAGAATCTGAGAATGTCTGTGTGTG
TGTCTGTGTGTGTGTGTGTGTCTGTGTGTCTGTCACCAAAACTTTGGGGC
AGCCTGGAGACTTCAAAAATGGTCCGATTTGGCTGAAATTTTGCACACTT
CATCCTTGGGCCAATCCCTGGGGGTGTTTTTTTCATTTATTCAAAATTTC
AATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAACACTT
TGGGGCAGGCTGGAGACTTTAAAAATGGCCCGATTGGGCTGAAATTTTGC
ACACTTGATCCTTACGCAAATCCCTGGGGGGGTTTTTTTCATTTTTTCAA
AATTTTAATTTTTGGGGCCTGGGACGAGTTTTTCGCCAAAACGAGGCTAA
AACTTTGGGGCAGGCTGGAGGCTTTAAAAATGGTCCGATTGGGCTGAAAT
TTTACACACTTGTTCCTTGGGCAAATCCCTGGGGGCGTTTTTTTCATTGT
TTCAAAATTTTAATTTTTGGGGCCTGGGGACGAGTTTTTCGCCAAAACGA
GGCTAACACTTTGGGGCAGGCTGGAGACTTTAAAAATGGCCCGATTGGGC
TGAAATTTTGCACACTTGATCCTTACGCAAATCCCTGGGGGGGTTTTTTT
CATTTTTTCAAAATTTTAATTTTTGGGGCCTGGGACGAGTTTTTCGCCAA
AACGAGGCTAAAACTTTGGGGCAGGCTGGAGGCTTTAAAAATGGTCCGAT
TGGGCTGAAATTTTACACACTTGTTCCTTGGGCAAATCCCTGGGGGCGTT
TTTTTCATTGTTTCAAAATTTTAATTTTTGGGGCCTGGGGACGAGTTTTT
CGCCAAAACGAGGCTAACACTTTGGGGCAGGCTGGAGACTTTAAAAATGG
CCCGATTGGGCTGAAATTTTGCACACTTGATCCTTACGCAAATCCCTGGG
GGGGTTTTTTTCATTTTTTCAAAATTTTAATTTTTGGGGCCTGGGACGAG
TTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGGCTGGAGGCTTTAAA
AATGGTCCGATTGGGCTGAAATTTTACACACTTGTTCCTTGGGCAAATCC
CTGGGGGCGTTTTTTTCATTGTTTCAAAATTTTAATTTTTGGGGCCTGGG
GACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGGCTGGAGAC
TTTAAAAATGGTCCGATTGGGCTGAAATTTTGCACACTTGATCCTTGGGC
AAATCCCTGGGGGCGTTTTTTTTTATTTTTTCAAAATTTTAATTTTTGGG
GCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGGT
TGGAGACTTCAAAATTGGTCCGATTGGGTTGAAATTTTGCACACTTGACC
CTTGGGCAAATCCCCGGGGGCATTTTTTTCATTTTTTCAAGATTTTGATT
TTTGGAGCCTGGGGACGAGTTTTTAGCCTAAACGAGGCTAAAACCCAAAC
TGCTATAATTTTTCTTAAGCCATTAAGTTTACATTTGGGCCTACGAATGA
TTTCAAAGATACTGAAGTTGAGCCAGTGCGGTTAGCACGTTCGACAGTAT
CATGAATTCCTTTTATATTACTCAGATCCAGAATTCATTCAATTCTTGGA
ATCGTTGGACAAAGAAGAAGAGAAGCTACCGAGTGCTGAGATCTACATCG
AAGAAATTGAAGCAGCCAAAGCTATCGATAAAAACAGTAAGCTTTTTTTG
CTTCAAACAGGATGTTTAGAATGATATCCTCCTATTGGAATTTTATTTCT
CTCTCACATCATCGATCAATGTTTGAAAGCCCAATAAGATGCTTACCTAC
GTGGAAACTAAATTACCACTGGAATACAGATTGTGCCCCCTTTCCTTTTG
TTCTCTCCTTAAATTTAATATAAGTAAGTATATTCATCTGGTTGCTGTTG
GTGGAGCCGGGAGTGGGGGAGTTAATCACCTTTTCTAATTGCGCTGACCT
GGGAGATTGCTAGGAGTGCTAGGGGGAGAACTACATCTACTCTCGGCATC
TATTTTAACTAACCAACCTATGTCAGATTACCCAATCTAAGCTACTCGCA
CACCGAGTTGGCGACCCTGTCATTCATCAGCAGCCTTAGTAATATCTGGG
ATACATGGATATTTTGTGTATTTTCTTTAAAGTATTGTTTTGCTTTTCGT
AGAGGTGAAGTTTACCACGCCATTGATCGATTATTTGAAAGAGAAGAGAG
ATGTTCGGTTAGCTGCCATTGCCCAGGTAACGTCCAGTATAATGATATGT
TTTGAAAAAACCTTGCAGAACCTTGCTATATTATCAAGAAAAGCGAGAAG
TACAATCATTAGGAATAATTAAAATCCATAATTCGAACACACATGGGGAA
CACAAATTTGTTCGAGTTAAGGAAATTTACAGGGGAGCTATAATGGGTGT
AGTAAATAGCGATATTCCAATCAACTTGAAAAAGTTTTTTTTTTTTTATG
TTTTCATTTGTTGTTTTTTTTTCAGAAAGAGAAGGAACGAAAAGAAAGGG
AACAAAAGGTATATTTTCCTATGAGGACTTTAAGGTTACAATAAATAATA
AACAGTAGACAAAAAGAACGACAAAATTCGACGTCCGCAGCCCCTACCCG
GATAGTTTGTCCACCCGTACGATTTGATTCCTCTTTGTTTATGAACGACT
TATGGCTTTAAAGAACGATAAATTTATGCCTGTGTGTTATTAAATGCAGG
AATTGTCAGTCAAACTCACTGTATTCGCTTATTGTAGAGAACTTAAGCCA
TCTTAGGTGTCGTCTTCCTAGGGTCAGGGGGATATAGGTTTTGAGACCAA
AGGGAGGTATAAGGGGAGGAAAAATATCTGAAACCAGGGTTGGGAGCAAC
TGAGGAGGAGCAATAGGAAATATACCGGGTGTGCCACAAATAAGTTACCC
TCTTTGAATTTATATTGCAGGCAGTAGCAGAAAGATTTTTCAAAGATTGT
TTCGGAATCATTCAGAGGAAAGCCTAACTTAAAATTTGGTGTATTACTTT
TTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTGTGCCACA
AATAAGTTACCCTCTTTGAATTTATATTGCAGGCAGTAGCAGAAAGATTT
TTCAAAGATTGTTTCGGAATCATTCAGAGGAAAGCCTGACTTAAAATTTG
GTTTATTACTTTTTAATTTTAATCCATTGGTTCAAGAGTTATGTTCAAAA
ACCTAAAATGTCAATTTTTAAACATGTCAAAAAAGGCTAAAAACAAGGGT
ATCGTTTTATGAGAGAAACGACTTCTTTTACCAAGTCTTGCTCCTTGTAA
CACTCTTTATCTATTCTTTATCTCAATTTTTTTGTTTTTGTTTTTTTACT
TCTGTTTTCCCTTGGGCATAGACATAATGCAAAATGCCTCAACCCTCACA
AAATTTTCAACATCTTTCCAAGAGTTTCCGAGAGTTTTTCTGTATGTGCA
TCATCGTCGAGAAAGGTAGATAAGGTGAAAGCTTTGAGCAAAAATGCCTT
GTTTGAGCTGCTACAGCTCATATCGATTCACAGATGATGGAATGTTTTTA
AATGGATGCCTAACCTTGTAAATAAATGCTTTTTACATAATGGAAATACA
TTTCCTGATGCATAAAATGGGTTCGTGTCTCTATTCATTACAGCCAATTT
TAATACTCTCGTTTTTGCCTTTTTTGACATTTTTAAAGATTGATATTATT
TATTTTTGAACATAACTTTTGAACCAATGAAGTAAAATTAAAAAGTAATA
CACCAAATTTTAAGTCAGGCTTTCTTCTGAATTATTCCGAAACACTCTTT
GAAAAATCTCTTTTCTACTGCCTAAAATATCAGATCGAAAAAGGTAACTT
ATTTGTGGCACACCCGGTAGGAGACCACTTTTAAATTGTTAATTCAAAAG
TTGAAAAAAGCGGATTTGCTGAAATACAACTAGACATATTTTTTTTAATT
ATTTTAACCAGCAATATCAAAGAGTCTTACTTGAATACAAATCCTTTCAA
TTAATCCGCTTCAGCACACCTTTTAGACCGTAGTCACCAATTGCCGCGCG
GGCATTTTTTTTGTTCCAGTTCTTTTTTCGCCCCTATAGACAACAATAGA
AAAAGGTGTAAAAAAAGGTTTGGATCGAGTTTAGAGGGATGATTAAATAA
TAAAGTGGCACGCGCCTGCCCGCGTGACTATGGTCGAAAAGGTGTATTCA
TTTCAGTTGTTTGTTTCATACAAAGTTGTCTCCCTTCATTCTTCTAGAGA
AGAGAACAACGTGACAAGAAGCAAAACAAACACGAAGAACAACGCAGCGA
AAGGTATGTTGTTGTATTTTATTTTAACAAAGTTGTGAATACGTGAATAC
GTTAACAACAACAATTTTACAGTTGACTCTCGCTAATGCGAACTCGAACG
GCGAATCTTGTTCATTCGAATTACAGAGAGATGTATTTTAAGAGGACTTC
TCCTTGGCGGGGTCTGGAAACAAGTTTGAATTATAGAAATATTTGAATAT
TTAGAAGTTAGATGATACAATAATGACCGGTTAGTGAGGGCTGTACTGAG
GACCGAGCTTGCGAGGTTGTTACGTCGACCGAAAAAAATATTCTCCATAG
TTAAAAAAATTTGAATTTGTTTTTCGAGAATTACTTCAGGCGTACAAACT
TTCTTAACTATGGAGAACATCTTTTAGAAAATCTACCGACAGATCATCCA
ATCGTGATTCGAAGAAAAATGACGAACGAAAAGACAAATACAAGGTATGA
TTATATTAACAATATTAAAACAGTTTTCTCACGTTTCACTCAAAATATCA
AAAGAGGACACTACACCGAATCTCAAAGTTATTTTTGACAAACCATAACA
TCAGAGGCTCTTATTCGGATTTATTTTATTAAATCTTTGTGAACTGGTTG
GATAAAAATATTTTTTCAAGTACCAAGTTACCATTCTCTCTCTCTTTCAA
TCCTAATTTAATTTTTCCAATTGTTCGCTAAAATTATGTTCCGATGAAGA
ACCGATGGTTTAACTTCCCCATCGTATAAGACTCTGGATTGGAGGTAAAA
CGAGATCTCGTTTGGTAAAATGTGCGCGTGATCTACTAAATTGGTCCCTA
TATGGCTAGAAACATTTTTGAAAATTCAGTGTTTTTTAGAGGTTCGTGCA
TGACACTAAATTCTCCAGTTTCCTCAGATCGCTCCGTTTTCGTACTAAAT
CCTTATGTTGCAGCAAGAGAACTCCTATGATTGGTTTGTTTTTCCCGTTT
TCCCGCGTGTTTATTTATTTGAACCGGTTGCTATTACCTACCTACAAAAA
GCTTTCTGACCTTTCTCTGCTTGCCAGCTTGCTGTGGATTGGAATGATAT
TGATTTGGATCATCCTGGCAAGAATATTGTTGTTATTTATTTTATCTAAT
TAACAAGATTCTTTCTCGCGTCGCTAGTTGCCTTAGGTGACGGTCTGGGT
TATATAATATCAAATTCAATCTTTGAAAATGAAATCGGATCCTAGAATGA
CTGAGAGTGAGAAAATTACCCATCATGTAGACGATGCTATCGTCCGTGTA
ATATGTTATGATGATATTATGATATAACATAGTTGTATATTATAAAACGT
AATATGTTGCGTGGCGGAAAAATAGAGTCTGTGTTTATATTGAGCCCCTC
CGACTATTCTTGTGCGTGCGGACAAAATTTCCGCCCGGAAATTCTTTATT
ATTTGAATTTGTCTTAGACTATAGCAAAGTCTACCCATCATGTGTCTATT
TTCAGGACAAAGAGAAAGAGGAAAGCAACAGCAAGTCGGACAAACGAAAA
GACAAGAAAGACAACAATACAAAACAACAAGACAGGTCGTCCTCAGCAAG
CAACAACAGTAAAGATAAAGACGATCATCGCGAGAAAGAGAAGAAAGAAC
GCCTGGGCGAAGGCGGCGGCGGTGGTGGTGGCGGGGGCGGTAAACGTGGA
CCACGNAAAGAAAGAACGGCTGAGCGAAGGCGGAGGCGGGGGCGGGGGCG
GTAAACGTGGACCACGTGAACGAGCCAGCGACAGAAAAAAAGGTGCGTAC
AACAGTCTCCATAGCTCGAACACACACGGGGAACACAGATTGGTTCGATT
TATAGAGTAAGGTTTATAAGGCATTATTAACTGAAAAGACCATAAGATTT
GTCCGAGTTAAGAGATATTCGAATTATAGGGGTTCGAGTTGAGTAGACTC
AACTGTAGTTGATGATGTTTTTGTAACAAAGAAGTTGTCGTTTTCATTCT
TATGCAGGGGACACGGTGTATAACGATTCTGTCCAGGACTATATTTAGCT
GCTTGGTGGGAGGAAAGGCCGGGGGCCTGGGTCGAGTGATGCTTTTTGTC
CTGGGTAAAAACAACTCAATTTGGCTAGTGAGGTTTATTCTTAGTGACAT
GATTTTATGATATACGAGTGAGCTTTTTCTCATTTATATATATGACATAT
CTCTTGCCACCGAACGAGTATTATGGCTTTTTTCATCCTCGTATTCATCC
TCATACTAGGTCGTAACAACAATGACAACCGACAAAATGAGCAACGCTCC
TTATCATCAGCCAAAAACGAGAAATATCCGTCCTCGTCAAAAGATCAAAG
TAAAGACACGACAAAAGACAAAAGTTCTTCTTCTTCATCGTCGTCAAATA
AAGATTCGTCCAAAGAATCTTCGAAAAAAGAAAACAGACGCTTGACACCT
CCCGAAAAAGGGTCCAGAGGAGGTAAAAATGATTCCCTTGCAACTACCTT
ATCGGCCAAAACTTAGTCGGCCCTAAGTGACTAAATTTTGGCTTGGTGAC
TAAAATTAGGGCCGAAGGCCGACTAAGTTTTGGCCGATAAGATATACAGT
ATTTGTACGATTAATCAAAAATTTACCACCTTAGAATTTCGCAAAATTCA
GCAAAATATTAAAAATCTGGGATAATCACGCCACATAAAAACGTCTCTGT
TTCGTCATTAAGACGTCGTCCTGTTTACTTGGATAGCATAAAAGAATTCG
CAAAGCATTGTTATTCATTGGTGAGAAGTACTAGTATCTATATCCATTAG
GGAATCGAATTTACGATAATTCCAATTTTATCCATATAATCCTTCAGAAA
GAAACCTATGAAATGTATTTTTTAAATACTATAATGCAACTATTATCATC
TCTCTTTACAGAATCACCAGAGAAGTCAGCAAAGAAAGACAAACGGAACA
AGGAACGTGACACCAGCGACGATACACCAACCTCGTCCTCCACAACCGCA
TCTCAGGCCGCATCTAAAGACAATACGCCAGAAGCTGTAAACTCCTCTGA
GAAAGCAAGCCCGAATAAGAATAATCGAAAGGTAACCAAAAAATTCTTGA
AAATGTTAGTATAACCCCTGGAAAATTGCTAAATGTGCAAAAAAATTCTT
CTTGATACCTTGATGGTGGACGAACTATAACCTTTTAGGTTATAAAAATA
GTCTTTTACCCCCTGGAAGTTTAAAATAATTTTGCCACTTGGAAAAATAA
AAAACAACTTCCATTGAAAATTCTTCTTCGGATTACCTCTTTGAAAAGTT
CGTCCACCCCCCCCCTGTATGGATATAAAATAAAATGAATGTAAATTAGC
CTGCAAACTGCAAAGTGAATGCTACTGTGCTACTACTGTACCTACTACTC
TTCTATACTTGAAAAATATGAAGATAACAAGTAGAATTAACTTTTTTATT
ACAGCCACGACCTGAGATGAAAATCTACCGACCACCATCAGAACGGCCCT
CTTCTGGTTCTTCTAAAAATGTGACGTCATCTTCAGAGAAAGATTTCGGT
AAGCCTCATTCTTCATGTCCATCATGAATAAACACAACAGTTTGTTTTGT
TTTGGTTGAAAGCAACAATCGTCAATCTGTTTGGAATCTGATACCTTGGC
GGAAACTAATTTTGACGAGCGGCAAAATTCCTGAAAATTTTTAATTTTGG
CGAGAACTTATTTTGGCGAGTGGACAAAATATTTAATTTTGGTGGGTCTT
AATTTTGGCGAATTTTGTCTAAATGCGCCAAATTCGCCAAAATTAGTTCC
CGCCAAAATAAGTTCCCTTAAGGTAGTTTCCATTTCTATTCAACCCATAA
CTGGAAATGGAATTTAAATCGTTTTGGTTATTACTACAGTGGAGTCTCTA
TAATTCGAACTTCAACAACTCGAATCTCTCCTTGACTCGAACGAGTTTTC
TGGTCCTACAAACTACATAACTCGAGATTTCCTAACTCAATAAATTTGCG
TTATAGAGACTCTACTGTACATAGCTTAGACGGTATAGAGTATGATACAG
CCGTGTATAGGCTACAACCTAATTTTAACTAGCATCCAAGATTATGCAAT
TTGTTGACTTTGGAAAACGACCTTATAAAATTTCGTTAAAATTTTTGAGA
TTCTTAAGCTGGGTGTCCACTGAAAAAGAATAAGTTCGTCGCAAATACCA
GACATATGATTTTTTCCAGTGGACACCCAGCTTTACTGTTGTGTATATAA
GGTATCGGTTTCACGTCTCGCAATCTTAGCGAGAGCCAAGTCTGTCAGAT
TTTAGTTGAAATATACAATATTCCCCTTAAAATTTCAGTTAATATGAAAA
GTATATATCTTTTCTGATTTAGACGACCGTTCATCCAAGGATTCGTCATC
CGACAGCAAACGAGGAAGTAGTACGTCTTCCAAATCAAATGACGGTGGAA
GTAAAAACAACAAGCCACCGCGATACCGTGACGATCGCCGATCCAATCGT
GATCGTGATCGTGATCGTGATCGTGATAGGTATTACGATAGGCACGATCG
ATACAACGACAGTCACGAAAGTCGACATTATTCCGATAACCGAAACAGCA
AACGGGGTTCCGATTATAACGAAAAATCGGGAAACCGGGATAAAGAGAAA
CGTGACGATTCTTCTTCAACACGACCTCAATCTTCCAAAAACAAAAATAA
CGAATCTTCGAGTTCGACAAAAAAATCTTCATCACAGAAAGATGTCTCGG
TCACCGTGAAAAAAGACGTTGACAAAGAGCGCGAGAGAGAATTAGAACAA
GAACGCTATCGAATGAATTGGCTAGGTAAAGAATAAAAAGACATTGTATT
TTATCAGAGGGGTACTAGGATTGGCAAATGAGGGGTATGTGCGGACGGGA
CCTCCGGAAACCGATGCTTAGTGAGACTGATTTTTGCTGAAAATACAGAC
TTTTTGAAAAAATCTCTTCGATTTTCGGAAAATTTCCTACCCTTAGATGT
TAGAGAGCTTTTTTACGTTTTTTTTGTCTCGAAACCGAAAAAAATCCTAA
AAATCGTGAATTAGAGCAACTAATTAAACATTTTCTAATGTTTGCAACCC
TAGGAGAGACATTGAAAGGTGAAAAACCGACCTTTACCGTCTGCACATAC
GCAGCACCTATTTTTGTCTAATTACTCCCCCTCCCCCGTATTGTATAAAG
TATTCTACCTTTAACTTAGTTTTTATTTCTGCTCTGTATATTTACTGAAA
TTTTGTTTTTGATCTCTTTGTGAATCATTGAATTATCTATCATTGAATTG
AATTTTGTGTTGTGATTTGTATAAATATTCTTTGTTTTCATTGAACATTT
TTATCGCAATTTCTTTGTGAATCCTGATTATTTTACTGGTTAAGTACACC
AGGTTTTAAATCCAAAATCTTTTGTCACATTTTTTTGTCTGTTAATTCAT
ATGCTGAATAATAATAGAATTAATCAAATAATCATTACGCTAGTTGAAAA
CTTTGAACGCAAATAACGCCCTCCAATTGTGTATAAATGAGTGCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042810XLOC_042810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068638-exon-scaffold_486-1575043694:309266..309567TCONS_00068638-exon-scaffold_486-1575043694:309266..309567Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:308711..308817TCONS_00068638-exon-scaffold_486-1575043694:308711..308817Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:308342..308448TCONS_00068638-exon-scaffold_486-1575043694:308342..308448Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:307848..307943TCONS_00068638-exon-scaffold_486-1575043694:307848..307943Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:304782..304892TCONS_00068638-exon-scaffold_486-1575043694:304782..304892Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:304242..304315TCONS_00068638-exon-scaffold_486-1575043694:304242..304315Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:303960..303992TCONS_00068638-exon-scaffold_486-1575043694:303960..303992Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:302115..302170TCONS_00068638-exon-scaffold_486-1575043694:302115..302170Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:301674..301740TCONS_00068638-exon-scaffold_486-1575043694:301674..301740Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:300506..300662TCONS_00068638-exon-scaffold_486-1575043694:300506..300662Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:300376..300438TCONS_00068638-exon-scaffold_486-1575043694:300376..300438Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:299696..299908TCONS_00068638-exon-scaffold_486-1575043694:299696..299908Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:299087..299256TCONS_00068638-exon-scaffold_486-1575043694:299087..299256Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:298620..298713TCONS_00068638-exon-scaffold_486-1575043694:298620..298713Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1575043694:296621..297795TCONS_00068638-exon-scaffold_486-1575043694:296621..297795Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:309266..309567TCONS_00068638-exon-scaffold_486-1510915933:309266..309567Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:308711..308817TCONS_00068638-exon-scaffold_486-1510915933:308711..308817Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:308342..308448TCONS_00068638-exon-scaffold_486-1510915933:308342..308448Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:307848..307943TCONS_00068638-exon-scaffold_486-1510915933:307848..307943Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:304782..304892TCONS_00068638-exon-scaffold_486-1510915933:304782..304892Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:304242..304315TCONS_00068638-exon-scaffold_486-1510915933:304242..304315Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:303960..303992TCONS_00068638-exon-scaffold_486-1510915933:303960..303992Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:302115..302170TCONS_00068638-exon-scaffold_486-1510915933:302115..302170Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:301674..301740TCONS_00068638-exon-scaffold_486-1510915933:301674..301740Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:300506..300662TCONS_00068638-exon-scaffold_486-1510915933:300506..300662Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:300376..300438TCONS_00068638-exon-scaffold_486-1510915933:300376..300438Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:299696..299908TCONS_00068638-exon-scaffold_486-1510915933:299696..299908Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:299087..299256TCONS_00068638-exon-scaffold_486-1510915933:299087..299256Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:298620..298713TCONS_00068638-exon-scaffold_486-1510915933:298620..298713Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1510915933:296621..297795TCONS_00068638-exon-scaffold_486-1510915933:296621..297795Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:309266..309567TCONS_00068638-exon-scaffold_486-1491911889:309266..309567Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:308711..308817TCONS_00068638-exon-scaffold_486-1491911889:308711..308817Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:308342..308448TCONS_00068638-exon-scaffold_486-1491911889:308342..308448Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:307848..307943TCONS_00068638-exon-scaffold_486-1491911889:307848..307943Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:304782..304892TCONS_00068638-exon-scaffold_486-1491911889:304782..304892Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:304242..304315TCONS_00068638-exon-scaffold_486-1491911889:304242..304315Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:303960..303992TCONS_00068638-exon-scaffold_486-1491911889:303960..303992Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:302115..302170TCONS_00068638-exon-scaffold_486-1491911889:302115..302170Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:301674..301740TCONS_00068638-exon-scaffold_486-1491911889:301674..301740Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:300506..300662TCONS_00068638-exon-scaffold_486-1491911889:300506..300662Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:300376..300438TCONS_00068638-exon-scaffold_486-1491911889:300376..300438Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:299696..299908TCONS_00068638-exon-scaffold_486-1491911889:299696..299908Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:299087..299256TCONS_00068638-exon-scaffold_486-1491911889:299087..299256Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:298620..298713TCONS_00068638-exon-scaffold_486-1491911889:298620..298713Clytia hemisphaericaexon
TCONS_00068638-exon-scaffold_486-1491911889:296621..297795TCONS_00068638-exon-scaffold_486-1491911889:296621..297795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:296621..309567 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.876	5.29757	2.25955	3.31592	14.3531	10.6331	10.8329	13.6111	2.70936	2.89309	2.92043	1.47675	2.13831	1.99093	1.76273	1.41876	1.91425	2.21796	1.0607	1.3566	1.6079	0.941134	2.28814	2.19582	5.83267	7.22398	1.06415	0.486726	1.23055	1.37911
Blast
[Close]
BLAST of TCONS_00068638 vs. Swiss-Prot (Human)
Match: REN3B (Regulator of nonsense transcripts 3B OS=Homo sapiens GN=UPF3B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.821e-28
Identity = 73/161 (45.34%), Postives = 107/161 (66.46%), Query Frame = 3 
Query:  300 KLVIRRLPTSLNEETLKEELGNIPEYEYFYFTTGDTSFGMQPYSRAYISFKNYDDVYDFRNKFDGHLFYDTRGREFSAVVEFAPCQ-LVPKERQKKDHKTGTLEKDPEFIQFLESLDKEEEKLPSXXXXXXXXXXXXXXDKNK---VKFTTPLIDYLKEKR 770
            K+VIRRLP +L +E L+E L  +PE++YF F + DTS     Y+RAYI+FKN +D+  FR++FDG++F D +G+E+ A+VEFAP Q    K+ +K+D K GT++ DPE+ +FLES   + EK+ S    + E   A    KN+    K TTPL+ +LK K+
Sbjct:   52 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQKAAKKKTKKRDTKVGTIDDDPEYRKFLESYATDNEKMTSTPETLLEEIEA----KNRELIAKKTTPLLSFLKNKQ 208
The following BLAST results are available for this feature:
BLAST of TCONS_00068638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
REN3B7.821e-2845.34Regulator of nonsense transcripts 3B OS=Homo sapie... [more]
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