TCONS_00068603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068603
Unique NameTCONS_00068603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068603 ID=TCONS_00068603|Name=TCONS_00068603|organism=Clytia hemisphaerica|type=transcript|length=1287bp
TCCCTGCATCTGAAGAATCGAACGAAATGACTTCTGCTTCAACAAATAAG
GATCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAACCCTCAGTCCAAA
GGACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAAAACGTCGAAATA
TCGAAGAAAGTGACGACACTGTTCCTACTAATAAGTTTGCTAAAATTGAG
GAACGTTTCGACCTGTCTAACAAAGACAAAACAAACTCTTGGAGTATTAA
ATCTGATCTTGCGGAGTATGCCATTAAACAGATGAACTCCTACATTAATG
ATGGTGATATAAAGGATGAAATTTTATATCAGTTTCCGATACCAGACAAT
CTAAATAACAAAAAGGAAATGGATTCCAATATTAGATCGCTTCTATCTGA
AATGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGTTTGAATCAGTCC
AAGACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAAGTATGGGAATTC
TTGGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTCAAACATGTCGGA
GGAGGAGTTTACATCAGACATGGACGACATGCTTCGCTCAGCAAAAGACT
GTGCAAGACTGATAGACATGACAGTCACCATGCTTGGACAAGCCTTTAAC
AGCTTATCTTATTACAGAAGAAGGAATGCATTGTTGTCAATCCTCAAAGG
GGACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACAAAGATATCCTTC
AAGAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaatttgatgaaaag
atGGTGGAAGTCGTTAAACTcaagaagaaatcaaaagaatttttcaatgt
AATGGATGGCAAAACGAAATCGTCCGTTAATAAACAGAACAGAATTGGGC
TCAACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACAAGTGGAAGGGGG
CAGAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAACAGAATTGGTTAT
GGCCCGCCAGGCGTAAAACCCCGTGGACGCGGACGTGGTCGTGGGCGTGG
TGGTTATCGCGGATGGCGCTGATTACAAACTAGTTTTTTCAATCAAAGAT
AGAACCTGAAACCTAATTACTTCTCGTTATTTTCTCTGCATTCCATTCTT
ATTTTGGCCAAACTAGGGAAAATCATCCTTAATAAAGTATTCGATGTTTC
GACCATAGTAAATAAAAAACGTCTTGATATGTATCTTTTTTCGGAAGTCT
TGGAATctgaattatatttttctaaaaacgtTACTTG
Run BLAST on NCBI

protein sequence of TCONS_00068603-protein

>TCONS_00068603-protein ID=TCONS_00068603-protein|Name=TCONS_00068603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
PASEESNEMTSASTNKDQVESPLNADSQTLSPKDQNQDPAEQMSRKRRNI
EESDDTVPTNKFAKIEERFDLSNKDKTNSWSIKSDLAEYAIKQMNSYIND
GDIKDEILYQFPIPDNLNNKKEMDSNIRSLLSEMRAKETLSLDKAFESVQ
DKVLNVFGPLSQVWEFLEIQKDQAIEQTSNMSEEEFTSDMDDMLRSAKDC
ARLIDMTVTMLGQAFNSLSYYRRRNALLSILKGDKTKVKEMMKENKDILQ
ENTSSNRLFGEKFDEKMVEVVKLKKKSKEFFNVMDGKTKSSVNKQNRIGL
NQSFRGGPLPGTSGRGQNFFQANLKVETTELVMARQA
Run BLAST on NCBI

transcript from alignment at scaffold_486:36835..40788+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068603 ID=TCONS_00068603|Name=TCONS_00068603|organism=Clytia hemisphaerica|type=transcript|length=3954bp|location=Sequence derived from alignment at scaffold_486:36835..40788+ (Clytia hemisphaerica)
TCCCTGCATCTGAAGAATCGAACGAAATGACTTCTGCTTCAACAAATAAG GATCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAACCCTCAGTCCAAA GGACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAAAACGTCGAAATA TCGAAGAAAGTGACGACACTGTTCCTACTAATAAGTTTGCTAAAATTGAG GAACGTTTCGACCTGTCTAACAAAGACAAAACAAACTCTTGGAGTATTAA ATCTGATCTTGCGGAGTATGCCATTAAACAGATGAACTCCTACATTAATG ATGGTGATATAAAGGATGAAATTTTATATCAGTTTCCGATACCAGACAAT CTAAATAACAAAAAGGAAATGGATTCCAATATTAGATCGCTTCTATCTGA AATGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGTTTGAATCAGTCC AAGACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAAGTATGGGAATTC TTGGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTCAAACATGTCGGA GGAGGAGTTTACATCAGACATGGACGACATGCTTCGCTCAGCAAAAGACT GTGCAAGACTGATAGACATGACAGTCACCATGCTTGGACAAGCCTTTAAC AGCTTATCTTATTACAGAAGAAGGAATGCATTGTTGTCAATCCTCAAAGG GGACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACAAAGATATCCTTC AAGAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaatttgatgaaaag atGGTGGAAGTCGTTAAACTcaagaagaaatcaaaagaatttttcaatgt AATGGATGGCAAAACGAAATCGTCCGTTAATAAACAGAACAGAATTGGGC TCAACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACAAGTGGAAGGGGG CAGAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAACAGAATTGGTAAG TCCAACTTCTTCTTCATTACAAACAAATTTAGTACCAATTTTGTCTGTTC AGGACTATCCAAAAGTCCATCGATTAGTGAAAAACCTGTTTCCAGTCAAG TTGAGTCAGAGTCTACCACTTGCCGGAAGGgtaaaatttttcatcaaaaa ctgGGAAAAACTGACAAAGGACCCCTCAGTTCTAGAGATAGTTCAAGGTT acaaaattccatttatagaCACTCCACATCAAACTTTTTTGCCCAAAGCA GGCAACTTATCCAAAGAAGAAAAGGAACTAGTGGAACAGGAAATAGAACA AATGCATGCAGCAGTTGAAAGGTGCAATAACAAAAGTGAAACCTTGCAAA GACCAGTTTCTCAGCAACATTTTCACAGTTCCCAAAAAAGATGGGGGGAA CAGACCTGTgataaatttaaaacatttgaaCAGTTTCATTCACTGCCCTC ATTTCAAGATGGAGGGGTTGTTCCTTGTAAAAGAACTACTTTCACCCAAC GATTGGATGTGCAAAGTGGATTTGAAGGATGCCTACTTCTCCATACCCAT CCATCAGAATTCACAGAAATTCTTACGTTTCGAATGGGAAGGTTCACTTT ATCAATTCCTCAGCCTGTGTTTTGGCCTGTCTCCTGCTCCACTAGTATTC acaaaattattgaaagttcCAATAACACTCCTAAGAAAATTACAGATAAG ATTGATAATTTATCTGGACGACATTCTTTTGATGGCTTCATCCAAGGAGG AATTGGAGATAGCCAGGGATacattgatttttctatttcaacATCTGGGT TTCGTAATCAATGCGAAAAAGTCAGAATTGACTCCTACGAAAAAGATAGA ATTTTTAGGGATCATTATAGATTCAGTGAAGATGGAAATGTCTCTATCAG AGGAAAAAGTTCAGAAAATTATTGTGAAATGCTTGAAAATGCTGgacaag aaaaaagtttctataAGGGAAGTTTCTCAGCTGATAGGGACATTATCATC CACAACAATGGCAATCCTGCCAGCTCCTCTCCAGTACAGGTTTATACAAA AACAAGTAATTCAAGAGTTGAACTTTTATCTATCATACGAGAAACAGATT GTACTCTCCCCCCAGGGGAGAGCAGAAATAGAATGGTGGATAAACAACAT ACGTTTGAACAATGGAAGGTCTCTACTTTGGAAACCACCCCAGTTACTGA TAAAATCAGATGCCTCAAAGGAAGGGTGGGGAGCTTACTGCCAAGGAAAG AAGACCGGGGGACCTTGGTCAGAAAGGGAAAGGGACCTGCACATAAATAT TCTGGAATTAAAAGCAGCAAACTTTGCCATATTGACATTCACCCAAAACA AGAGTCATCTGAACAGCATTCATATTCAGATAGACAACATGACTGCCCTC TCCTACCTAGTGAAAATGGGAGGGACAAACAACCAGGAATTAGTGAGAAT AAGCAAGCAAATTTGGAATTACTTAATTTCCAAGGGGATCACACTTACTG TAGAATATCTTCCAGGGATATTAAACAAGGAAGCGGATTTCGAGTCCAGA AATGCGAGGGATTGCAGCGAGTGGAAACTAGACCCCGGAGATAGACCTTT TTGCGTCAAGGGTCTCCAAAGAGCTGAAAAAGTATCTCTCGTGCTTTCCC CCGTTCAATCTGATAGGAAAGGTGCTAGCAAAAGTTCAGAGGGAACAGTC ATACTTAATTCTAATAACACCAGCTTGGCAAACTCAGTCTTGGTTTCCAA AACTAATGGAAATGGCAGTTGCAATTCCAGTTCTTCTTCCCTCATACGAA AGCCTTTTGAGCAACCCAAAAAAGGAAATTCATCCATTGTTAGAAAACCA CTACTTAAGACTCCTGGCATGGAAAGTTTCAGGAAAAAGGTATCTTCAGA AGGAATTTCGGAAAGAGCTTCCAATCTCATCTCCAATGCAAGAAGAGTTG GAACAATATCTGATTACGAATCGGCCTGGAGAAAGTNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNTGGTGGCTACGAGCAATAGCTTTCAGCTATTCTCTTAGCCTGGATT CCTCGATGCGAGCGAGATCGGGCTATACTCCAATATTAGATCGTTTGTTT ctattttatgaaataaaattgaggATTACGTAAGGGCGCGAAGCGCCTGA AATGTAATCCagattttatgaataaaatagAAACAAACGATCTAATATTC CCGCCCACCCGCTCCTGGCATCCttgtttatttctattttattctcTTGT GTATTTTTTCAGGTTATGGCCCGCCAGGCGTAAAACCCCGTGGACGCGGA CGTGGTCGTGGGCGTGGTGGTTATCGCGGATGGCGCTGATTACAAACTAG TTTTTTCAATCAAAGATAGAACCTGAAACCTAATTACTTCTCGTTATTTT CTCTGCATTCCATTCTTATTTTGGCCAAACTAGGGAAAATCATCCTTAAT AAAGTATTCGATGTTTCGACCATAGTAAATAAAAAACGTCTTGATATGTA TCTTTTTTCGGAAGTCTTGGAATctgaattatatttttctaaaaacgtTA CTTG

Coding sequence (CDS) from alignment at scaffold_486:36835..40788+

>TCONS_00068603 ID=TCONS_00068603|Name=TCONS_00068603|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_486:36835..40788+ (Clytia hemisphaerica)
CCTGCATCTGAAGAATCGAACGAAATGACTTCTGCTTCAACAAATAAGGA
TCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAACCCTCAGTCCAAAGG
ACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAAAACGTCGAAATATC
GAAGAAAGTGACGACACTGTTCCTACTAATAAGTTTGCTAAAATTGAGGA
ACGTTTCGACCTGTCTAACAAAGACAAAACAAACTCTTGGAGTATTAAAT
CTGATCTTGCGGAGTATGCCATTAAACAGATGAACTCCTACATTAATGAT
GGTGATATAAAGGATGAAATTTTATATCAGTTTCCGATACCAGACAATCT
AAATAACAAAAAGGAAATGGATTCCAATATTAGATCGCTTCTATCTGAAA
TGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGTTTGAATCAGTCCAA
GACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAAGTATGGGAATTCTT
GGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTCAAACATGTCGGAGG
AGGAGTTTACATCAGACATGGACGACATGCTTCGCTCAGCAAAAGACTGT
GCAAGACTGATAGACATGACAGTCACCATGCTTGGACAAGCCTTTAACAG
CTTATCTTATTACAGAAGAAGGAATGCATTGTTGTCAATCCTCAAAGGGG
ACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACAAAGATATCCTTCAA
GAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaatttgatgaaaagat
GGTGGAAGTCGTTAAACTcaagaagaaatcaaaagaatttttcaatgtAA
TGGATGGCAAAACGAAATCGTCCGTTAATAAACAGAACAGAATTGGGCTC
AACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACAAGTGGAAGGGGGCA
GAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAACAGAATTGGTTATGG
CCCGCCAGGCGTAACCTGCATCTGAAGAATCGAACGAAATGACTTCTGCT
TCAACAAATAAGGATCAAGTCGAGAGTCCGTTGAATGCAGATTCCCAAAC
CCTCAGTCCAAAGGACCAAAATCAGGATCCAGCTGAGCAAATGTCTAGAA
AACGTCGAAATATCGAAGAAAGTGACGACACTGTTCCTACTAATAAGTTT
GCTAAAATTGAGGAACGTTTCGACCTGTCTAACAAAGACAAAACAAACTC
TTGGAGTATTAAATCTGATCTTGCGGAGTATGCCATTAAACAGATGAACT
CCTACATTAATGATGGTGATATAAAGGATGAAATTTTATATCAGTTTCCG
ATACCAGACAATCTAAATAACAAAAAGGAAATGGATTCCAATATTAGATC
GCTTCTATCTGAAATGAGAGCGAAAGAAACTTTGTCGCTTGACAAAGCGT
TTGAATCAGTCCAAGACAAAGTCTTGAATGTTTTTGGACCCCTGTCCCAA
GTATGGGAATTCTTGGAGATCCAGAAGGATCAGGCAATCGAGCAGACCTC
AAACATGTCGGAGGAGGAGTTTACATCAGACATGGACGACATGCTTCGCT
CAGCAAAAGACTGTGCAAGACTGATAGACATGACAGTCACCATGCTTGGA
CAAGCCTTTAACAGCTTATCTTATTACAGAAGAAGGAATGCATTGTTGTC
AATCCTCAAAGGGGACAAAACGAAAGTGAAGGAAATGATGAAGGAGAACA
AAGATATCCTTCAAGAGAATACGTCTTCTAATCGCCTTTTTGGAgagaaa
tttgatgaaaagatGGTGGAAGTCGTTAAACTcaagaagaaatcaaaaga
atttttcaatgtAATGGATGGCAAAACGAAATCGTCCGTTAATAAACAGA
ACAGAATTGGGCTCAACCAGTCCTTTCGTGGGGGCCCCCTACCCGGTACA
AGTGGAAGGGGGCAGAATTTTTTCCAAGCCAACCTCAAAGTGGAAACAAC
AGAATTGGTTATGGCCCGCCAGGCGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042793XLOC_042793Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068603-proteinTCONS_00068603-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068603-exon-scaffold_486-1491911889:36835..37829TCONS_00068603-exon-scaffold_486-1491911889:36835..37829Clytia hemisphaericaexon
TCONS_00068603-exon-scaffold_486-1510915933:36835..37829TCONS_00068603-exon-scaffold_486-1510915933:36835..37829Clytia hemisphaericaexon
TCONS_00068603-exon-scaffold_486-1575043694:36835..37829TCONS_00068603-exon-scaffold_486-1575043694:36835..37829Clytia hemisphaericaexon
TCONS_00068603-exon-scaffold_486-1491911889:40497..40788TCONS_00068603-exon-scaffold_486-1491911889:40497..40788Clytia hemisphaericaexon
TCONS_00068603-exon-scaffold_486-1510915933:40497..40788TCONS_00068603-exon-scaffold_486-1510915933:40497..40788Clytia hemisphaericaexon
TCONS_00068603-exon-scaffold_486-1575043694:40497..40788TCONS_00068603-exon-scaffold_486-1575043694:40497..40788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_486supercontigscaffold_486:36835..40788 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.544892 0.715749 0.216255 0 43.7708 35.7349 8.79377 10.6432 3.74933 4.52098 4.61164 3.92395 2.32927 2.15308 1.16158 1.51524 2.21989 2.9082 7.34404 7.81326 1.99035 3.04819 2.2596 3.82543 0.326779 0.233982 3.80978 1.74125 5.76558 3.00581
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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