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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068596 ID=TCONS_00068596|Name=TCONS_00068596|organism=Clytia hemisphaerica|type=transcript|length=822bp
agcaaaatgaatcaaaatttcACCATGCTTCAAATCATGAGCCCATTCAA
AAGGGAGGGACATTTCTTTGATATAATGTTTTGCAATAACACTTTGCGTG
TGCAAGGAATAAACGACTACACCATCTACTAAGAACATGAGTATTTTATC
AGCATTGATGTTAAAAACAACATCATTCTGGCAAACTCCCATTGACATTG
TGTCGATGGTCAGCACTCTTTTCAAGGATAAACAATTATCTGAAGAGAAA
AGAGATCTGAATATATGAACATCGCGTTTGTGTTCCTTATTTTCTTCGTT
GAAGGTTTCGACCATAAGACTTAAAGTCTTTTCATCCGTTGATAGTTTTA
TATCAAAGTCTTTCAGGTAACAGTGCTCCTCTTCTAACTCAAAAATAGTT
CCCAGGTCTCTTCCTGTTCTATCCATGTCGGGgttaaatttaaaatcatc
aACTAACTGACATAAAGTCAAAGATATAGCTCGCCTGTTTTTATGCTCAA
ctggaaaaataacaaaatcatGACTTGCGTTGATGGCACTACTCAATGAA
TTTACTGGTGAATAGTAAAAACCTTTGCGACACTTTAAAGTCAGTTTATT
GCTATTATCGATTCCATTGTAAACCCAAACAATGTTTCTGATGAAATGAC
TTTGACTGGTCCATTCAGATACTGTAAAAGTGTTATTATTAGTGTTATTA
TTCTTTTCTTCGATAACAAAATGGTTTGGGGTAACGTTAACAGTATTTTC
TGGTATTAATCGAACTCTTGGTAATGAATCATCATTAAAACCAAGCAGTG
CAGTTTTCATTGCTACAAGATG Run BLAST on NCBI transcript from alignment at scaffold_486:18343..28371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068596 ID=TCONS_00068596|Name=TCONS_00068596|organism=Clytia hemisphaerica|type=transcript|length=10029bp|location=Sequence derived from alignment at scaffold_486:18343..28371+ (Clytia hemisphaerica)
agcaaaatgaatcaaaatttcACCATGCTTCAAATCATGAGCCCATTCAA
AAGGGAGGGACATTTCTTTGATAGAATGTTTTACAATTACACTTTGCGTG
TGCAAGGAATAAACGACTACACCATCTACTAAGAACATGAGTATTTTATC
AGCATTAATGTTCAAAACAACATCATTCGACCAAACCCCCATTGACATTG
CGTCGATGGTCAGCACTCTTTCCAAGGATAAACAATTATCTGAAGAGAAA
AGAGATCTGAATATATGAACATCGCGTTTGTGTTCCTCATTTTCTTCATT
GAAGGTTTCGACCATAAGACTTGAAGTCTTTTCATTCGTTGATAGTTTTA
TATCAAAGTTTTTTCACGTAGCAGTGCTCCTCTTTTAACTCAAAAATAGT
TCCCAGGTCTCTTCCTGCTGTATACACGGCAGGGTGAAAATCATCAACTA
ACTGACATAAAGTCAAAGATATAGATCGTCCGCTTTTATGTTCAActgga
aaaataacaaaatcatGACTTGCGTTGATGGCACTACTCAATGAATTTAC
TGGTGAACAGTAAAAACCTTTGCGACACTTTAAAGTCAGTTTATTGCTAT
TATCGATTCGATTGTAAGCCCAAACAATTTTTCTGATTAAATGACTTTGA
CTGGTCCATTCAGATACTGTAAAAGGGTTGTTATTAAACGATGCATCCAT
TGATTTACGTGAATTGTCTGCTTTCTTTTCTTCGATAACAAAATGGTTTG
GGGTAATGTTACCAGTATTTTCTGGTATCAATCGAACTTTTGGTAATGAA
TCATCATTAAAACCAAGCAGTCCAGTTTTCATTGCtacaaaatgattttt
taattatattaattctaaaagaaattaaaaatcacatgtcaaaataataG
CACTGTTTTGGTCAAGCAATTAATATAAGCTGCCTGGAGAAGAACCTCGG
acaagaatttatttttaaagattCAATGGTCACAGACTACGGTATGTAGA
ACAAACTGCATCATGCACCAATCCAAGAAAAAGAACCAAAGATTAAACAC
GCGCATTCATGATTTGATATTGTAGCAAATACTTAGCGATCTAATCTTCT
ACACACTTACCTTCAAATACGAAGAAAAGAAAACGTCCACCGAACTGTCA
AACCATGTATATGGAATTTACCACTCAACCTGTCTCTAACTTGGTCGGTA
ATTGACCACGGCCAGCCATATGTTAATTGGTCAAAGCGATGAAACCTTTG
TCTTACAGAGAAGTTTCATACTATAATCTCAGAACTTGACCTTGTAAACA
AACAGTTCGAATTGATTTCGAAATGTCGTCATAGCAAGAAATTTGTTCTA
AATAACTTTAAATGCCTCCGGACAAAACACtgataataaataaataaata
tattttaatagcctcagtattcacttcattgtttTTAAACGCCTTTATAT
GACATTTTTTAACACACCTATTTTAATCTTATTACGCCAATCACCCACTT
TGTTCTACTTTTTTTCTAGCTTtttaacgtcaattttaccatgtacatat
aaacgactggacatctatcctttattgtctctttgaagcgagcttcgttg
ccgcctgtttttcaaaattggtataaaaaatccgacaatattctatcata
attttatttctttgaattatttaggtaaaaagatcgatagagcttgaaca
ttactcctaatgtacgaaaaaactattttcgaatttttttacaagtttgg
aatatattttatcaactttttcaactctgaaatgcagaatttcaactgcg
cgTATACTTCTGAATTCCTTTTGTCActgcaataattttttttatgactt
gaaatattagtcggagttttgacaagctaaCGATGAATTttcctctgtta
tctttgttatgatatagataaaagacttagTAGAACAACAGAACAACCTT
Tgacgaagttttgacgttgttagcaaggtattcccaagtggtatatcatc
aaaatctattgtttcattttatgcttttaacgaggcagCAACGAAACTAG
CTGTGTTATcctcaaaaagacaaaggagatggatgcccagtcgtttatat
gttcatgattttACATTTGATAAATGTGGAAACATTAAACTCTGAGTTAT
GTActcattttaaaatctttagttTTTGCTCTGATTGATAGAAAGATAAC
TTTTCCTGATAATTATATGGCTCTGGTTACCCATCGAGCACTCTGACATC
ATCGATTCGTCTAACCTTGATGTGATATTTTAAAAAGGCCTTGAAATCGT
ATAAAATTACTATCAGGATATGAGAGTGGACAGTTAATTATTAATcaata
attaattaatttcttTCGTCAATCGTTGTCAAAGTAGAGCCATTCACCAT
TATTTGCAATCATAAAACCTGAATTCTTTAAGATGTCTCATCTTCATCAT
AACTTTGACCATTTCTAATAGAATTGAGCAACTTTCCAAATTCAAGCCTT
CGCTTTCAATGTAAACAACTTTCTAATAAAATTGAATTCTTCCTTTGTAT
TCTTGGTATATCTTGGTTTTGACCAAAGCCTCATCATTGACAACTGCTGC
ATCTTCTTTGAAGTAAGAGCAATATTCTGAGCACTTTTGTGATCTAAGTA
AGAAATCACCAATTTCCATAGCTCATTTGGCAAAtccatattttttaaaa
atttttttatcggTCTTTGTTTTCTGACTTTTGAACTTAAATGAAAGCAT
ACATATTAAAACAAACCGTTATATAACATTACGCTTCGAGGTAAAAATGA
ggacatgttaagaacattaggttcaaaactcaaaaatttaaaaatatccg
aaggcttcaaaaatattgaatatttttatgaaaaaaaaacctcTTGACTA
AGATTTAACACTGGTCCAAATTTTAGTTCAATAACATTTTGCAATCCTTA
GATACTTGAACTCATTTACGCATTAAGCACAAAATTCGAACAATTTAAAA
CAGGGAAATTTAAGGGTAGAAACATTTTCatacattttatttatttttct
atacCAACGAAATGTTGCTTAAAAATACTTCGCCGTAAAACTTTATTTTA
TTatacatttatttttcaattccaAGAAACCGGAATAAAGATTCTGgaag
attttgcttgattatTTCTTCCTCACTGAACGAGGTCAAAACAGCAAGAC
GCGCTAAACATTTCAAAGTTAAGCCAATATTTGGGAAAACAATCTTATGA
GCTTTGAACAACATCTCATCATGGCCACCCTCCTCGTGATTGCTTACATA
GAACCCAGTATAAACCAATTCCTTTAAATTccaatttaatgaaaatgtct
gCATTTCATCATTTGGATTTACATTAATCTCACTTGAAATCTGTTTGCTA
TTTAAGTCGAACAGAAAAAATTTCGTCGATGACTTGTCCGGCTCGTAAAG
CAAGGGAATCAAAAGATGTCCAAATTTTAATATTGGACAACCAGGAAAAT
CGACTTTAGTGATTTCGAGGTTTACAGGAAGTTTGAATTCTTGACTGGAT
CCAATATGACCCTCTAGAAGTCTTTGCATGCAAAAGATTCCTGATATACC
GTAGAAAATGACAATCACTGTATCACCTTCTCCAGATTGCAATAAAGACT
GATAATTGAACAAATCAGAATCCCATGACAGTATGTATGAAAATACAATT
TTCCCATTAAGATCAACTTCAAAGATTTCGTACGTTTTAACAGATTTTGC
AGAAAAATACAGCCTTTGTTTGGAATATAAGATCTTCATTGGATGGTAAA
TACCGGAAGAAAAAATCTCCAAATCGCATTCCACCCTTTTCAAATGAACC
ATATGCATCTTACTAACGTGCAAAACATCGATGCAAATCTCAGGTCGATA
TCGATAATACCATCTATCTTCTCTATATCTACAATACCCTTGAAGAAGCa
gagttgatgattttttatcAACACCACAACGTTCAAAATAAATCTTGTTA
AATCGTTCCTTGTCATAATTCAAAGTAATATCAGGTGTTTTATCAATCAC
AATTGTGTCATTCGATTTTTTCAAAAGGTCAAAGATATCGAGATAATAAA
GGTCCACAGCAATATTTTCATCTTCTGATGCTTTATATTGAACACTATGG
ACAACTTTGCCATGGTATGGAAACAAGAAAGACTGTCTGTCGCATTCACA
TTCGATAGGTATTGAGATCTTCAATATCTTCTTTCCAATTGATTCAGTTA
CTGCATCAAAATCGATAACAAAAATAGCCATATCAAATTCTCCATACTCA
TCTATTGCAATAATGTAATATTTACCAGAACCATCAAAGCCTTGGTCGTA
AATATCTCTGTAGAAATCTACGCCAAGTGAGATTGATAATTCATCTTTGC
CAAGCATATTTGGAGGTACAAACATTGATTTTGCAATATtggtcattttt
tttatttttcaatttgttatccttaatctgaaaaatgaaaaataaagttt
gaaAGTATAAGCTTTAAGAAGCAAGCCTTGCTAGATTACGAGTCTCGCAT
AATTTCATGTAATTTGGCGCAAATAAATGATTTGCTCGACAATCAATGAA
ATTAacgtactcttgtctcccgaatagacgggtgGGGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGgggta
atttttgaaatttgtgaaattttcaggagagatacataaaattgtcatta
atatcatgttcaaacatccaaaaaattctctttaaaggaaagaagaaaaa
tggcaatttttacatttctctaaccttccacagtactaaagtgagcaaTT
TTACCTATCGCCTttacggtggagatggcgaaACTTTTAAAGGGTGTATT
AGCGGgagggggtcttaataagagcgggggatAGATTTTTtcctcttaac
aattagcgggggggggcgtCTATTCAAGAGACAGGAGTAACCGGCCAAAG
GGTTAGAAACTAAGAAGAGCAACTGGTATTTCAATCCATGAAAACTTTTC
GATATAAAAATTCAAACTATACACAACACAACAAACagacaaaatgttaa
aaaaaggaGCATGCAAATTACATTATAGCCTGGATCAACCAAATTtaaag
ttcccgccaaattaaattcccgtcaaaggttaatttttcaagccatctaa
aaaatcaaattcccatctgtaaaaaaaactttttcgaccaCCCGCATAGT
TAAATttccgctaaaatttcttcccttaaggtattcgTCTCAGATCAGAA
ACCATTGTGGGCGACTTCTTAGCTTTCTCAATGTGAATTGAGTAATCTTT
AAGCCACTCCCTCAAagaatttcatcaaaaactGGGCTAGACGTCAAGTA
AAAATCcaaactttgattttttggacaataccttaagtggatagattttg
gcggggattaaatttggcgaatttaacgaattttgttaaaaaacgccaaa
ttaaatccctgccgaaatttcaaaaacgatcattcgccaaattaaatccc
tgcaAAATTTAACGAAATTTTTCAAGATAGAAGTTCTATGGAGAATAATG
CATTTTTAGTAAAATACCATGCATTTCTTAGTTTACCAGAGACTAAAACC
Ttcccattcgccaaattaaatccccgctaaaatttacaaaattgattatt
CGCCAagttaaatccccgccaaagaTTTAATTTTTCCCAATCGCCAATTT
ATATATCCACctcaaaattaatccacttaaggtattttcGAAAGTTTCTT
TATTTAAAGTGATCAAAATATCAAATGGTCTATCTTAGAAAACaagataa
aaatggaaaaatggaaaaaaaaagtGGCAGTCTAGGATAAACATATTATT
TATCAGATATGATCAATGGTAATTTTTAACAAAGATCACTCTGGAGAGAC
AATTACATAAAAACTtgtataaaaacattttcaaaaattctaagCCAGCT
TAAAAAGAAAACACGACTCAAATAAAAGAACAGATGAAATAATAAAAGag
atcaaattttcacttttcaattcCTAAATATCCAAAAAGAGTTGATGGTA
GATTGAGCTTTAGTAATTCGTTACTGCTAAATAATTGAAGTACTACCACT
CGTGCCAAATGTTTCAGAGTGattttttgaattgaatattCATTCATATT
TACATGAgcgattttgaaaaacattttctgcctCTCCATCGTCATCTCGT
CAAAATAAGTGATCCCAACTTCGTGCAGAttccaatttaaaaaaaaattc
ggtAAAGGCAATCCTCTAAAAATCCCATACCCTCTTAATTTCTCTCCATT
GCAAATTTGAATCCAAGAGACAAGTTGTCTGCCTTTATTAAAGTCAGAAG
CATTGGCAACCAAAAGGAAATCAACAAACCTTTTGATCGAATATTGAAAC
GAAAATGACTTTACATCTGATGTTTCGTAATCAATTATTTCATCATTAAA
CTCTTGAACAATACATGTCCTATCTTGATTCAATTCCCAAACTCGTATAG
CATTATCCTTGTGAGTAATTCTTTTGTGTGATAAAACAATATAACGGTCG
TCAAAATGATAATCATGGTATCCATCATCTATTGCAATCGAATAAACATA
ACAAAAATTGCCAGTGTAGTCATATTCGTCAATTCTTAAGACACTGTctc
ttttgaaataaaaatagattctctcttttgttgcattgagaaaaaagaaa
aaatcgtcaaaaactGAAGATTGACTGAGATCGACGACAACTCTCTTTGA
ATGACAGATTTCAGTTTGCTGCGTCTTTATAACATCCAAACAACATTCAC
GGAGACGAGTTGCTTCTCCTTCctcgttatattttttgaaaaaggttaaC
ACCAAAAGTGCAGTTACGTCATTTTCTCTTAATCCATACCAAATTTGGCA
TCTTTCGTAGTCTTTATCATCGAATCTTAAAACAATATCTGCTTCACTTG
GCTCGATAGTTAAATCCAATACCTTATACGGATGATCAACTAAAACATCA
GGGAGATAATAATGATAAACATTTATTATAAAGTTCTCTGCATTATCACT
ATCGAGGATATCATGCTTCACAATGACAACAACATTCCCAGTATACGCAT
CAAGTTCCTGCCAGACCGATTCCGAACCATCCATATCTTGGAAATCAATG
GTTAGATTTCTCTTCTCGAGAGCATTTTGTTGTTCATTGAAATACACCAT
AAATACACGAAGACGATCTCCACCATCCATATCTTCGAGAATGTAAAAGT
GTTTGCTAGTGTGGTCAAATCCCCTTTGAAAGGAATTGATAGCTTGAAGA
TCATTATATCCAAGGAAATGctcaattctttatttttgtattctGTAGTT
GCTGTTGGTGGCAGAAACATTGATTTTCTTACGTCGTTCATTGTTAATAT
TATTCTTCACCCACAATCTTAACTATGGTAGAAGAAATTTCGTGTAATTG
CAAACAATGAAAGACAGAGTAATAGTAAGTTGAATTTAATCAGATAGAAT
TGCATAACTACCCGGGGTGCGAATgtcaaaagtgaccccattttctttag
cTATTCATTGAGAGGAATCTCCCTGTTTAGTTAGTTTAGACATtttgaaa
acctttaaaaataagtttaaattatagaaaaaaatcTCCATCAACATCAT
GAATTCTACATGATTGATTAAGagaagtttcttttttttatcaaagtatT
TTGAAGATATAATAATTAAAACGTGATCAGATTtcataaagaaaatattg
tatAAGCAAGAGTTTTCtaataatgacaaaaaaattatgaaattgtgtgA
ACGTTGAACGTTCTTTAAAATTATAGAtaaatttcgagaaaatatcgaga
aaaataaaagtaaaatgtacaaaaaaaagCAAGTTAATACGATATTCTAA
AAAATGgatcttaaattttgatgttaaaATACCTATATTTTGTGTACAGG
AAGGGATGTACCAGAAAAATTCAGCCGCTTTAATTTCGATTATTTTTCGT
CCTAAATCTTTTCAGTAGTTTGGAATCCTGATAATTCATCGAAAATAGAT
CTCTTTTCACACAAAAATCTCCGTAATAAGAAAGCTTCACTCTAAAATTT
CGGAATTGGGCAAAACGGCtcaaaaactaaagaaaaatccATCAtgaaac
caaaatatttttaccctgAACAAGATTAAAGGATTGATGTTGTGACCATT
AGTCCAGTTATAATCTATAGTTTCTGTAAGTAAATCATTTATAAAGATAA
AAAGCTATAAGAAATATAAGAATTGATTATGAACGACTTTTATAAACCCA
CaaacttcaaaaagttcaaCATCTAAATTAAAAACAGAAATAGAAATAAA
CTTATCTTTCCAACAGTATATAATAAATTCATATTTCAAACTACCATACA
TAATCTGTATAAAATTAACCTAAATAATCACTATAGTACTAAATTTAGAT
CaacaaaaaatcaagtaaacattcaaaatagATCAGTGcatcaaaaatat
tcaaaacaaataaaattggtCAAGTAATTatagaaaaaagtaaaataaga
aaaaaatgaaaggtaTAGAAGTTTTGTCTGGTCATACCTTTTTTGCTCAC
CTTGTACTGTAGTATACACGAAATTTTAggtgatcatttaaaaaagttat
ccTTAATCGACTTTGGTAAGTTCAATTGTACCAAATCATTGATGGAATAA
TTCAACAATACAACTTTAAGTGGAGAATGTAACAGTGGTTCCACAAACCT
tgttttcaatttgaaaacttGCCAAAAGAATTTATTGTCAACCCCGCTAT
AAAACACCACTACTTCATTTGAACACCAATTCAACTGGACATTTATAACA
GAGATATTTGGTCTACTGACATTACACATTATCTTTTGTAAAAGATGACC
TGTGAAAGGGTCGATCAAATAAACATCTCGCCTTGCCAGTATCAATAAAG
ATGTACCAGAAGTCACTTGATGATAATATGGCTGCTGGCAACGGAAATCG
AAGCTGAGATGTTTTGGTATGAAATCTGAAACATTAACTTTAGTTATCAA
GGACAATGTTTTCTCCAGGTAATTAATTGTATGAACGTTTATTTTGGTCC
GTTCCTCagcaaaatgaatcaaaatttcACCATGCTTCAAATCATGAGCC
CATTCGAAAGGGAGGTACATTTCTTTGATATAATGTTTTGCAATAACACT
TTGCGTGTGCAAGGAATAAACGACTACACCATCTACTAAGAACATGAGTA
TTTTATCAGCATTGATGTTAAAAACAACATCATTCTGGCAAACTCCCATT
GACATTGTGTCGATGGTCAGCACTCTTTTCAAGGATAAACAATTATCTGA
AGAGAAAAGAGATCTGAATATATGAACATCGCGTTTGTGTTCCTTATTTT
CTTCGTTGAAGGTTTCGACCATAAGACTTAAAGTCTTTTCATCCGTTGAT
AGTTTTATATCAAAGTCTTTCAGGTAACAGTGCTCCTCTTCTAACTCAAA
AATAGTTCCCAGGTCTCTTCCTGTTCTATCCATGTCGGGgttaaatttaa
aatcatcaACTAACTGACATAAAGTCAAAGATATAGCTCGCCTGTTTTTA
TGCTCAActggaaaaataacaaaatcatGACTTGCGTTGATGGCACTACT
CAATGAATTTACTGGTGAATAGTAAAAACCTTTGCGACACTTTAAAGTCA
GTTTATTGCTATTATCGATTCCATTGTAAACCCAAACAATGTTTCTGATG
AAATGACTTTGACTGGTCCATTCAGATACTGTAAAAGTGTTATTATTAGT
GTTATTATTCTTTTCTTCGATAACAAAATGGTTTGGGGTAACGTTAACAG
TATTTTCTGGTATTAATCGAACTCTTGGTAATGAATCATCATTAAAACCA
AGCAGTGCAGTTTTCATTGCTACAAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068596-exon-scaffold_486-1491911889:18343..18403 | TCONS_00068596-exon-scaffold_486-1491911889:18343..18403 | Clytia hemisphaerica | exon |
| TCONS_00068596-exon-scaffold_486-1510915933:18343..18403 | TCONS_00068596-exon-scaffold_486-1510915933:18343..18403 | Clytia hemisphaerica | exon |
| TCONS_00068596-exon-scaffold_486-1575043694:18343..18403 | TCONS_00068596-exon-scaffold_486-1575043694:18343..18403 | Clytia hemisphaerica | exon |
| TCONS_00068596-exon-scaffold_486-1491911889:27611..28371 | TCONS_00068596-exon-scaffold_486-1491911889:27611..28371 | Clytia hemisphaerica | exon |
| TCONS_00068596-exon-scaffold_486-1510915933:27611..28371 | TCONS_00068596-exon-scaffold_486-1510915933:27611..28371 | Clytia hemisphaerica | exon |
| TCONS_00068596-exon-scaffold_486-1575043694:27611..28371 | TCONS_00068596-exon-scaffold_486-1575043694:27611..28371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_486 | supercontig | scaffold_486:18343..28371 + |
Blast
The following BLAST results are available for this feature:
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