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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068586 ID=TCONS_00068586|Name=TCONS_00068586|organism=Clytia hemisphaerica|type=transcript|length=1133bp
GGttgatgagacaggggtgtatgtaGCACGAGGATATTAATTTGAATTCA
TACTTTCAAATTTAGATATCTATCGTCCACTCATTGAAATGACGAAAGAT
GAACTTTGCAACAAAATTGTGGAATACTGGCAAGACAACAAGGCTCAGTT
TTCTCCTTTCATTCCTGATTCAGATTTTGATGAACAGTTACAACTATTTA
AGACAGCGTGTCATACGTCCAAGCTGTCATGCTCGCTCCCAATTGTTCTT
TCTTCCCTGGTCAAAACACCGATTGTTATCATAACAGATATGCAAAATGC
TGCCATGATTCCAGTGGTTCCGAATGGAACGGATGTTTTTGACCAAGATC
GTATTTGGATATCATTTCAGTCCAACCAATACAGGTTCTTGTACAGAGTG
AGCAAAACAACACCAAGCGATGAAGAAAGGAAAATACCCAACTCAAAGAT
TCAAACATCTAATAAAAATGTTGGATGCCGCTGTGGTCAAGGCGccaaaa
ggaaacaaaaacagGTTGTGTCCTGCAAAGAATTCAGATCAAGATGCCCT
TGCTACCAAAAAGTTCGCCCGTGCACTGATGAGTGTAGTTGCATTGGCTG
CGAGAATCCACACGGTGTGAAAAGTAATGTTCAAATTCCTGTGAAAAGTG
CCACCCGTGTCAGGCGGCAGCACAACTCGACCAAGAATATCTCAGGTAAA
AGCTTTCTTCAAATGAATCATTGCGAGGCGCCTGAGATATTCAATAGGTT
AGAGGAGTTCGTTCTACATGAAATTACTAATTTGATTCTACACAAAGAGG
ACTTGGATCCAATGTTTTTGCACAATTTTTACAATGGTATTGCAAAATCC
CCTGAAGGTGTTTTGTTGGGACTTCgagaaaaatcggaaaaatgcttgaa
aaagaaattggaaattatgaaaaataatggACTTTTGTGTCGAAAACTCA
TTTTAGAACAGGGAAAAATTATCATTAAAGCTATGTAGTAAATTTAATAT
CATGTGTTGACACGATAGATAAGGAGATAACCGTAATCTTCCCAAATCTT
ACTTTTCGTTTTCACCCCTAACTCTGAGGGCTAGTTaaattaatgaattt
ttttgcttcaggTTTTggcttttttgtattttg Run BLAST on NCBI protein sequence of TCONS_00068586-protein >TCONS_00068586-protein ID=TCONS_00068586-protein|Name=TCONS_00068586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MTKDELCNKIVEYWQDNKAQFSPFIPDSDFDEQLQLFKTACHTSKLSCSL
PIVLSSLVKTPIVIITDMQNAAMIPVVPNGTDVFDQDRIWISFQSNQYRF
LYRVSKTTPSDEERKIPNSKIQTSNKNVGCRCGQGAKRKQKQVVSCKEFR
SRCPCYQKVRPCTDECSCIGCENPHGVKSNVQIPVKSATRVRRQHNSTKN
ISGKSFLQMNHCEAPEIFNRLEEFVLHEITNLILHKEDLDPMFLHNFYNG
IAKSPEGVLLGLREKSEKCLKKKLEIMKNNGLLCRKLILEQGKIIIKAM Run BLAST on NCBI transcript from alignment at scaffold_485:606038..607170 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068586 ID=TCONS_00068586|Name=TCONS_00068586|organism=Clytia hemisphaerica|type=transcript|length=1133bp|location=Sequence derived from alignment at scaffold_485:606038..607170 (Clytia hemisphaerica)
caaaatacaaaaaagccAAAAcctgaagcaaaaaaattcattaatttAAC
TAGCCCTCAGAGTTAGGGGTGAAAACGAAAAGTAAGATTTGGGAAGATTA
CGGTTATCTCCTTATCTATCGTGTCAACACATGATATTAAATTTACTACA
TAGCTTTAATGATAATTTTTCCCTGTTCTAAAATGAGTTTTCGACACAAA
AGTccattatttttcataatttccaatttctttttcaagcatttttccga
tttttctcGAAGTCCCAACAAAACACCTTCAGGGGATTTTGCAATACCAT
TGTAAAAATTGTGCAAAAACATTGGATCCAAGTCCTCTTTGTGTAGAATC
AAATTAGTAATTTCATGTAGAACGAACTCCTCTAACCTATTGAATATCTC
AGGCGCCTCGCAATGATTCATTTGAAGAAAGCTTTTACCTGAGATATTCT
TGGTCGAGTTGTGCTGCCGCCTGACACGGGTGGCACTTTTCACAGGAATT
TGAACATTACTTTTCACACCGTGTGGATTCTCGCAGCCAATGCAACTACA
CTCATCAGTGCACGGGCGAACTTTTTGGTAGCAAGGGCATCTTGATCTGA
ATTCTTTGCAGGACACAACctgtttttgtttccttttggCGCCTTGACCA
CAGCGGCATCCAACATTTTTATTAGATGTTTGAATCTTTGAGTTGGGTAT
TTTCCTTTCTTCATCGCTTGGTGTTGTTTTGCTCACTCTGTACAAGAACC
TGTATTGGTTGGACTGAAATGATATCCAAATACGATCTTGGTCAAAAACA
TCCGTTCCATTCGGAACCACTGGAATCATGGCAGCATTTTGCATATCTGT
TATGATAACAATCGGTGTTTTGACCAGGGAAGAAAGAACAATTGGGAGCG
AGCATGACAGCTTGGACGTATGACACGCTGTCTTAAATAGTTGTAACTGT
TCATCAAAATCTGAATCAGGAATGAAAGGAGAAAACTGAGCCTTGTTGTC
TTGCCAGTATTCCACAATTTTGTTGCAAAGTTCATCTTTCGTCATTTCAA
TGAGTGGACGATAGATATCTAAATTTGAAAGTATGAATTCAAATTAATAT
CCTCGTGCtacatacacccctgtctcatcaaCC Coding sequence (CDS) from alignment at scaffold_485:606038..607170 >TCONS_00068586 ID=TCONS_00068586|Name=TCONS_00068586|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_485:606038..607170 (Clytia hemisphaerica)
CTACATAGCTTTAATGATAATTTTTCCCTGTTCTAAAATGAGTTTTCGAC
ACAAAAGTccattatttttcataatttccaatttctttttcaagcatttt
tccgatttttctcGAAGTCCCAACAAAACACCTTCAGGGGATTTTGCAAT
ACCATTGTAAAAATTGTGCAAAAACATTGGATCCAAGTCCTCTTTGTGTA
GAATCAAATTAGTAATTTCATGTAGAACGAACTCCTCTAACCTATTGAAT
ATCTCAGGCGCCTCGCAATGATTCATTTGAAGAAAGCTTTTACCTGAGAT
ATTCTTGGTCGAGTTGTGCTGCCGCCTGACACGGGTGGCACTTTTCACAG
GAATTTGAACATTACTTTTCACACCGTGTGGATTCTCGCAGCCAATGCAA
CTACACTCATCAGTGCACGGGCGAACTTTTTGGTAGCAAGGGCATCTTGA
TCTGAATTCTTTGCAGGACACAACctgtttttgtttccttttggCGCCTT
GACCACAGCGGCATCCAACATTTTTATTAGATGTTTGAATCTTTGAGTTG
GGTATTTTCCTTTCTTCATCGCTTGGTGTTGTTTTGCTCACTCTGTACAA
GAACCTGTATTGGTTGGACTGAAATGATATCCAAATACGATCTTGGTCAA
AAACATCCGTTCCATTCGGAACCACTGGAATCATGGCAGCATTTTGCATA
TCTGTTATGATAACAATCGGTGTTTTGACCAGGGAAGAAAGAACAATTGG
GAGCGAGCATGACAGCTTGGACGTATGACACGCTGTCTTAAATAGTTGTA
ACTGTTCATCAAAATCTGAATCAGGAATGAAAGGAGAAAACTGAGCCTTG
TTGTCTTGCCAGTATTCCACAATTTTGTTGCAAAGTTCATCTTTCGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068586-exon-scaffold_485-1491911889:606038..607170 | TCONS_00068586-exon-scaffold_485-1491911889:606038..607170 | Clytia hemisphaerica | exon |
| TCONS_00068586-exon-scaffold_485-1510915933:606038..607170 | TCONS_00068586-exon-scaffold_485-1510915933:606038..607170 | Clytia hemisphaerica | exon |
| TCONS_00068586-exon-scaffold_485-1575043694:606038..607170 | TCONS_00068586-exon-scaffold_485-1575043694:606038..607170 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:606038..607170 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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