|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068585 ID=TCONS_00068585|Name=TCONS_00068585|organism=Clytia hemisphaerica|type=transcript|length=1831bp NNACTGACACCATGTCAACAAATGGAATACCTGGGGGTACTGATAGACAG CTCCAGCATGATATTCAAAGTCCCTCAGgagaaaatgctaaaattgaaaa aactttgtgTCCAAATGCTAAATCTGAAGAGCTTCCCTATAAGGAAACTT GCAAGCCTAATAGGCAATCTAATGGCAATAGCTCCAGCCTTTACTCTAGC TCCTCTTCAGATAAGACTCTTGCAGAAATGCATGAACAAACAGCTAGCGA AAAACAAACAACATTACGGCTCAATGATGAAACTAGACAACCCTGCAAAG GAAAAATTAAAGTGGTGGATAGGAAACTTCTCCTCAGGAAACGGCAAGGA CATAAACATTCGTCCCCCAGATTTAATTATAAGCTCAGATGCGGCAAAGG GAAAAATGGGGGGATGGGGAGCTCATTGTGGTCAAAGCTCCACAGGAGGG CTATGGACAGAGTCAGAGAAAAGGGAACATATAAATATCCTAGAAATGAA AGCAGCCCTGATAGCACTGAAAACCTTTATAAAGGGGAATCACCTAAGGT CAGTACATCTACTGATAGACAACCAAGTAGCCCTGGCACATATTGTGAAA ATGGGTCGGCCGACAAACTCTACCCTAATAAGCCTGTCAAAAGAGATTTG GTTTTTGAACCAAAAGAACATCAGCCTCACTGCAGAATATATTCCATCGA CCCTAAACAAGGAGGCCGACTTCGAGTCCAGGAATGCAAAAGACTGGGGG GACTGGAAACTAGCAAGGCAAACGTTCAAACACATAATGAATGTGTGGGG ACCCCCAGAAATCGATCTTTTTGCCTCAAGAACCTCTCACCAACTACAGA CTTACTACAGTTGGAAACCAGACCCACACTGTCTAGCAGTAGATGCACTG AACCAACCCTGGGACCAAAACCTAGTGTATGCTTTCCCCCCATTCTCTCT AATAGGGAGGTGTCTGGAAAAAGTAAGGAGATCCAAAGCAACAGTATCCT AGTGGCCCCAATTTGGACGACTCAAACTTGGTACCCAGTCTTATTGGGAA TGCTAATATCAAACCCAAGAAAGATAGTAATGAGGGAAGACACTCTAACA CATCCATCAGGGGAGACCCACCCTCTAATACTGAACCAAACCCTCCACCT AGCGGTATGGGAAATCTCGGGAAACAAAAGCTTTCAGGCAAACTATCACA AGCAGCTTCTTCCCTTATCCAACAGTCCAAGGCAGAGGGAACTAGAAAAC ATTACCTGTCAGCCTGGAAAAGCTTCAGCAGCTGGTGTGATAGGGAGGAA ACTGATCCCATTTCAGCCCCTATAGAGAAAGTGGCCAATTACTTAGGTAC CCTATTTGAAGAAGGGAAAGAGTATAGCACCATAAATGTACATAGGTCAG CCATCTCGTTCTATCACCAACTAGTTGAGGGCTTGCCTGCAGGACAACAC CCCATGGTCACCTCTCTATTAAAAGGAGTCTCAAGACAAAGACCCCAGCT CCCCAAATACACTGAAATATGGGATATCGACACTGTGCTCAATTAtataa gggagtggtcagataATGAGTCACTACAATTGAAAGACCTCACACTAAAA ACAATACTTTTAGGAATACTAGCACCTAACAGGGGCTCCGAGCTAACAAA CTTGGACATAAAGTTTATGGGAAGGTCGGACTCCACTATTATTTTCCACT TGAACAAACCTCCAAAACACTTCAAACAAGGGAAGAAAGCAGAACCCATT GAGTTCAGGAAATTTGAAGGGAATATTAAACTATGCCCTTACAATACTTT AACAAGTTATATCGAACTCACAAAAAGATTC Run BLAST on NCBI protein sequence of TCONS_00068585-protein >TCONS_00068585-protein ID=TCONS_00068585-protein|Name=TCONS_00068585-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
TDTMSTNGIPGGTDRQLQHDIQSPSGENAKIEKTLCPNAKSEELPYKETC KPNRQSNGNSSSLYSSSSSDKTLAEMHEQTASEKQTTLRLNDETRQPCKG KIKVVDRKLLLRKRQGHKHSSPRFNYKLRCGKGKNGGMGSSLWSKLHRRA MDRVREKGTYKYPRNESSPDSTENLYKGESPKVSTSTDRQPSSPGTYCEN GSADKLYPNKPVKRDLVFEPKEHQPHCRIYSIDPKQGGRLRVQECKRLGG LETSKANVQTHNECVGTPRNRSFCLKNLSPTTDLLQLETRPTLSSSRCTE PTLGPKPSVCFPPILSNREVSGKSKEIQSNSILVAPIWTTQTWYPVLLGM LISNPRKIVMREDTLTHPSGETHPLILNQTLHLAVWEISGNKSFQANYHK QLLPLSNSPRQRELENITCQPGKASAAGVIGRKLIPFQPL Run BLAST on NCBI transcript from alignment at scaffold_485:594477..596307 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068585 ID=TCONS_00068585|Name=TCONS_00068585|organism=Clytia hemisphaerica|type=transcript|length=1831bp|location=Sequence derived from alignment at scaffold_485:594477..596307 (Clytia hemisphaerica) GAATCTTTTTGTGAGTTCGATATAACTTGTTAAAGTATTGTAAGGGCATA
GTTTAATATTCCCTTCAAATTTCCTGAACTCAATGGGTTCTGCTTTCTTC
CCTTGTTTGAAGTGTTTTGGAGGTTTGTTCAAGTGGAAAATAATAGTGGA
GTCCGACCTTCCCATAAACTTTATGTCCAAGTTTGTTAGCTCGGAGCCCC
TGTTAGGTGCTAGTATTCCTAAAAGTATTGTTTTTAGTGTGAGGTCTTTC
AATTGTAGTGACTCATtatctgaccactcccttataTAATTGAGCACAGT
GTCGATATCCCATATTTCAGTGTATTTGGGGAGCTGGGGTCTTTGTCTTG
AGACTCCTTTTAATAGAGAGGTGACCATGGGGTGTTGTCCTGCAGGCAAG
CCCTCAACTAGTTGGTGATAGAACGAGATGGCTGACCTATGTACATTTAT
GGTGCTATACTCTTTCCCTTCTTCAAATAGGGTACCTAAGTAATTGGCCA
CTTTCTCTATAGGGGCTGAAATGGGATCAGTTTCCTCCCTATCACACCAG
CTGCTGAAGCTTTTCCAGGCTGACAGGTAATGTTTTCTAGTTCCCTCTGC
CTTGGACTGTTGGATAAGGGAAGAAGCTGCTTGTGATAGTTTGCCTGAAA
GCTTTTGTTTCCCGAGATTTCCCATACCGCTAGGTGGAGGGTTTGGTTCA
GTATTAGAGGGTGGGTCTCCCCTGATGGATGTGTTAGAGTGTCTTCCCTC
ATTACTATCTTTCTTGGGTTTGATATTAGCATTCCCAATAAGACTGGGTA
CCAAGTTTGAGTCGTCCAAATTGGGGCCACTAGGATACTGTTGCTTTGGA
TCTCCTTACTTTTTCCAGACACCTCCCTATTAGAGAGAATGGGGGGAAAG
CATACACTAGGTTTTGGTCCCAGGGTTGGTTCAGTGCATCTACTGCTAGA
CAGTGTGGGTCTGGTTTCCAACTGTAGTAAGTCTGTAGTTGGTGAGAGGT
TCTTGAGGCAAAAAGATCGATTTCTGGGGGTCCCCACACATTCATTATGT
GTTTGAACGTTTGCCTTGCTAGTTTCCAGTCCCCCCAGTCTTTTGCATTC
CTGGACTCGAAGTCGGCCTCCTTGTTTAGGGTCGATGGAATATATTCTGC
AGTGAGGCTGATGTTCTTTTGGTTCAAAAACCAAATCTCTTTTGACAGGC
TTATTAGGGTAGAGTTTGTCGGCCGACCCATTTTCACAATATGTGCCAGG
GCTACTTGGTTGTCTATCAGTAGATGTACTGACCTTAGGTGATTCCCCTT
TATAAAGGTTTTCAGTGCTATCAGGGCTGCTTTCATTTCTAGGATATTTA
TATGTTCCCTTTTCTCTGACTCTGTCCATAGCCCTCCTGTGGAGCTTTGA
CCACAATGAGCTCCCCATCCCCCCATTTTTCCCTTTGCCGCATCTGAGCT
TATAATTAAATCTGGGGGACGAATGTTTATGTCCTTGCCGTTTCCTGAGG
AGAAGTTTCCTATCCACCACTTTAATTTTTCCTTTGCAGGGTTGTCTAGT
TTCATCATTGAGCCGTAATGTTGTTTGTTTTTCGCTAGCTGTTTGTTCAT
GCATTTCTGCAAGAGTCTTATCTGAAGAGGAGCTAGAGTAAAGGCTGGAG
CTATTGCCATTAGATTGCCTATTAGGCTTGCAAGTTTCCTTATAGGGAAG
CTCTTCAGATTTAGCATTTGGAcacaaagttttttcaattttagcatttt
ctcCTGAGGGACTTTGAATATCATGCTGGAGCTGTCTATCAGTACCCCCA
GGTATTCCATTTGTTGACATGGTGTCAGTNN Coding sequence (CDS) from alignment at scaffold_485:594477..596307 >TCONS_00068585 ID=TCONS_00068585|Name=TCONS_00068585|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_485:594477..596307 (Clytia hemisphaerica) CTATAGGGGCTGAAATGGGATCAGTTTCCTCCCTATCACACCAGCTGCTG AAGCTTTTCCAGGCTGACAGGTAATGTTTTCTAGTTCCCTCTGCCTTGGA CTGTTGGATAAGGGAAGAAGCTGCTTGTGATAGTTTGCCTGAAAGCTTTT GTTTCCCGAGATTTCCCATACCGCTAGGTGGAGGGTTTGGTTCAGTATTA GAGGGTGGGTCTCCCCTGATGGATGTGTTAGAGTGTCTTCCCTCATTACT ATCTTTCTTGGGTTTGATATTAGCATTCCCAATAAGACTGGGTACCAAGT TTGAGTCGTCCAAATTGGGGCCACTAGGATACTGTTGCTTTGGATCTCCT TACTTTTTCCAGACACCTCCCTATTAGAGAGAATGGGGGGAAAGCATACA CTAGGTTTTGGTCCCAGGGTTGGTTCAGTGCATCTACTGCTAGACAGTGT GGGTCTGGTTTCCAACTGTAGTAAGTCTGTAGTTGGTGAGAGGTTCTTGA GGCAAAAAGATCGATTTCTGGGGGTCCCCACACATTCATTATGTGTTTGA ACGTTTGCCTTGCTAGTTTCCAGTCCCCCCAGTCTTTTGCATTCCTGGAC TCGAAGTCGGCCTCCTTGTTTAGGGTCGATGGAATATATTCTGCAGTGAG GCTGATGTTCTTTTGGTTCAAAAACCAAATCTCTTTTGACAGGCTTATTA GGGTAGAGTTTGTCGGCCGACCCATTTTCACAATATGTGCCAGGGCTACT TGGTTGTCTATCAGTAGATGTACTGACCTTAGGTGATTCCCCTTTATAAA GGTTTTCAGTGCTATCAGGGCTGCTTTCATTTCTAGGATATTTATATGTT CCCTTTTCTCTGACTCTGTCCATAGCCCTCCTGTGGAGCTTTGACCACAA TGAGCTCCCCATCCCCCCATTTTTCCCTTTGCCGCATCTGAGCTTATAAT TAAATCTGGGGGACGAATGTTTATGTCCTTGCCGTTTCCTGAGGAGAAGT TTCCTATCCACCACTTTAATTTTTCCTTTGCAGGGTTGTCTAGTTTCATC ATTGAGCCGTAATGTTGTTTGTTTTTCGCTAGCTGTTTGTTCATGCATTT CTGCAAGAGTCTTATCTGAAGAGGAGCTAGAGTAAAGGCTGGAGCTATTG CCATTAGATTGCCTATTAGGCTTGCAAGTTTCCTTATAGGGAAGCTCTTC AGATTTAGCATTTGGAcacaaagttttttcaattttagcattttctcCTG AGGGACTTTGAATATCATGCTGGAGCTGTCTATCAGTACCCCCAGGTATT CCATTTGTTGACATGGTGTCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00068585-exon-scaffold_485-1491911889:594477..596307 | TCONS_00068585-exon-scaffold_485-1491911889:594477..596307 | Clytia hemisphaerica | exon |
TCONS_00068585-exon-scaffold_485-1510915933:594477..596307 | TCONS_00068585-exon-scaffold_485-1510915933:594477..596307 | Clytia hemisphaerica | exon |
TCONS_00068585-exon-scaffold_485-1575043694:594477..596307 | TCONS_00068585-exon-scaffold_485-1575043694:594477..596307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_485 | supercontig | scaffold_485:594477..596307 . |
Blast
The following BLAST results are available for this feature:
|