TCONS_00068543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068543
Unique NameTCONS_00068543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068543 ID=TCONS_00068543|Name=TCONS_00068543|organism=Clytia hemisphaerica|type=transcript|length=598bp
GCTTCACGAACGACAATCTTGTGACACTTAGTGAATCCAAGGCCATCAGA
GATATGGAGGAGAGCATTGTAACGTTTTCAAACACAATGTCGGAAGAATC
GCGAACTGAAAAGCTTTGGTTATCCTACATCAATTATATCAAAGTGGTAA
AAGAATTCATCGTTGCTGAGAGAAGCTGTAATTGGCACCTTCATATCCAA
TCAATCATCAAGATGCAAAACCTATTCGCAGCTACTGGTCATCGAAACTA
TGCAAAGTGCTCACGAATCTATGTCCAAGAGATGGAGAGTTGGACATCTT
CTAATGGATGGCTTCAAGAACAGTTCGAGGCCGGACGACACGCAGTGAGA
CGATCAAACAGATTTTGGGCTGGTATTTGGTCAGATTTGGTAATAGAACA
AACGTTGATGAGGTCATTAAAATGTGCTGGTGGTTTGACGAGAGgtAGAG
GATTCAGTGAAAATGTCCGTAATCTATGGACAATGAGTGTTGGTTTCACC
GCAACAGTCCATGAATCAATGATACAACTTTCAGGCGTTCAAAGTGGACC
AAGTGATCAAAACGTTGAGATGGGCAAGAATCGATGCATCAAGGATAC
Run BLAST on NCBI

protein sequence of TCONS_00068543-protein

>TCONS_00068543-protein ID=TCONS_00068543-protein|Name=TCONS_00068543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
FTNDNLVTLSESKAIRDMEESIVTFSNTMSEESRTEKLWLSYINYIKVVK
EFIVAERSCNWHLHIQSIIKMQNLFAATGHRNYAKCSRIYVQEMESWTSS
NGWLQEQFEAGRHAVRRSNRFWAGIWSDLVIEQTLMRSLKCAGGLTRGRG
FSENVRNLWTMSVGFTATVHESMIQLSGVQSGPSDQNVEMGKNRCIKD
Run BLAST on NCBI

transcript from alignment at scaffold_485:450121..450901-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068543 ID=TCONS_00068543|Name=TCONS_00068543|organism=Clytia hemisphaerica|type=transcript|length=781bp|location=Sequence derived from alignment at scaffold_485:450121..450901- (Clytia hemisphaerica)
GCTTCACGAACGACAATCTTGTGACACTTAGTGAATCCAAGGCCATCAGA
GATATGGAGGAGAGCATTGTAACGTTTTCAAACACAATGTCGGAAGAATC
GCGAACTGAAAAGCTTTGGTTATCCTACATCAATTATATCAAAGTGGTAA
AAGAATTCATCGTTGCTGAGAGAAGCTGTAATTGGCACCTTCATATCCAA
TCAATCATCAAGATGCAAAACCTATTCGCAGCTACTGGTCATCGAAACTA
TGCAAAGTGCTCACGAATCTATGTCCAAGAGATGGAGAGTTGGACATCTT
CTAATGGATGGCTTCAAGAACAGTTCGAGGCCGGACGACACGCAGTGAGA
CGATCAAACAGATTTTGGGCTGGTATTTGGTCAGATTTGGTAATAGAACA
AACGTTGATGAGGTCATTAAAATGTGCTGGTGGTTTGACGAGAGGTATTT
TAATTTATATCGTGAAGACCAAATCGAAGTTTTCTTTGACTGTGCTTTTT
AGACATAATTCCAATCGTATGTAAAATTCAAATAATGCAAAGGTATTTAA
ATCATTAAAGGTATGGCTGCTGACCCAGACATACGATCTCTGAAATTAAA
TTCCGGTCAAAATTTCTTTCTTTAAAGGTAGAGGATTCAGTGAAAATGTC
CGTAATCTATGGACAATGAGTGTTGGTTTCACCGCAACAGTCCATGAATC
AATGATACAACTTTCAGGCGTTCAAAGTGGACCAAGTGATCAAAACGTTG
AGATGGGCAAGAATCGATGCATCAAGGATAC

Coding sequence (CDS) from alignment at scaffold_485:450121..450901-

>TCONS_00068543 ID=TCONS_00068543|Name=TCONS_00068543|organism=Clytia hemisphaerica|type=CDS|length=1188bp|location=Sequence derived from alignment at scaffold_485:450121..450901- (Clytia hemisphaerica)
GTAGAGGATTCAGTGAAAATGTCCGTAATCTATGGACAATGAGTGTTGGT
TTCACCGCAACAGTCCATGAATCAATGATACAACTTTCAGGCGTTCAAAG
TGGACCAAGTGATCAAAACGTTGAGATGGGCAAGAATCGATGCATCAAGG
ATTTCACGAACGACAATCTTGTGACACTTAGTGAATCCAAGGCCATCAGA
GATATGGAGGAGAGCATTGTAACGTTTTCAAACACAATGTCGGAAGAATC
GCGAACTGAAAAGCTTTGGTTATCCTACATCAATTATATCAAAGTGGTAA
AAGAATTCATCGTTGCTGAGAGAAGCTGTAATTGGCACCTTCATATCCAA
TCAATCATCAAGATGCAAAACCTATTCGCAGCTACTGGTCATCGAAACTA
TGCAAAGTGCTCACGAATCTATGTCCAAGAGATGGAGAGTTGGACATCTT
CTAATGGATGGCTTCAAGAACAGTTCGAGGCCGGACGACACGCAGTGAGA
CGATCAAACAGATTTTGGGCTGGTATTTGGTCAGATTTGGTAATAGAACA
AACGTTGATGAGGTCATTAAAATGTGCTGGTGGTTTGACGAGAGGTAGAG
GATTCAGTGAAAATGTCCGTAATCTATGGACAATGAGTGTTGGTTTCACC
GCAACAGTCCATGAATCAATGATACAACTTTCAGGCGTTCAAAGTGGACC
AAGTGATCAAAACGTTGAGATGGGCAAGAATCGATGCATCAAGGATTTCA
CGAACGACAATCTTGTGACACTTAGTGAATCCAAGGCCATCAGAGATATG
GAGGAGAGCATTGTAACGTTTTCAAACACAATGTCGGAAGAATCGCGAAC
TGAAAAGCTTTGGTTATCCTACATCAATTATATCAAAGTGGTAAAAGAAT
TCATCGTTGCTGAGAGAAGCTGTAATTGGCACCTTCATATCCAATCAATC
ATCAAGATGCAAAACCTATTCGCAGCTACTGGTCATCGAAACTATGCAAA
GTGCTCACGAATCTATGTCCAAGAGATGGAGAGTTGGACATCTTCTAATG
GATGGCTTCAAGAACAGTTCGAGGCCGGACGACACGCAGTGAGACGATCA
AACAGATTTTGGGCTGGTATTTGGTCAGATTTGGTAATAGAACAAACGTT
GATGAGGTCATTAAAATGTGCTGGTGGTTTGACGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042747XLOC_042747Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068543-proteinTCONS_00068543-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068543-exon-scaffold_485-1575043694:450458..450901TCONS_00068543-exon-scaffold_485-1575043694:450458..450901Clytia hemisphaericaexon
TCONS_00068543-exon-scaffold_485-1575043694:450121..450274TCONS_00068543-exon-scaffold_485-1575043694:450121..450274Clytia hemisphaericaexon
TCONS_00068543-exon-scaffold_485-1510915933:450458..450901TCONS_00068543-exon-scaffold_485-1510915933:450458..450901Clytia hemisphaericaexon
TCONS_00068543-exon-scaffold_485-1510915933:450121..450274TCONS_00068543-exon-scaffold_485-1510915933:450121..450274Clytia hemisphaericaexon
TCONS_00068543-exon-scaffold_485-1491911889:450458..450901TCONS_00068543-exon-scaffold_485-1491911889:450458..450901Clytia hemisphaericaexon
TCONS_00068543-exon-scaffold_485-1491911889:450121..450274TCONS_00068543-exon-scaffold_485-1491911889:450121..450274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_485supercontigscaffold_485:450121..450901 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.224919	0.0889367	0.192436	0.303083	0	0.291569	0	0.439091	0.153709	0	0.369601	0.067562	0	0	0.207151	0.0555762	0	0	0.0969502	0.405806	0.176359	0.129033	0	0	0.19584	0.174783	0	0.266928	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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