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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068575 ID=TCONS_00068575|Name=TCONS_00068575|organism=Clytia hemisphaerica|type=transcript|length=2683bp
GCTTTTCTAAGTAGGAGTAGACTAattttaacattgttttaattgtttta
attttataattttatataAAAGGAGGAGGTGGTCATATTGtaacaaaaag
taataaaaaaaacaatagatctgtaatttttttctaaaatttcaaatagg
tattttacttttatcaaaaatagattttatcaGAAATAGATTTTTATTAT
ATGGAGGAGGAGGCTAAAGATTGtgacaaaaaagagaaaaacaataactt
tgtaaaaattttaaCTAGGAAATCACATTTTGTTGGTAAAGGTGTATTAA
TGATTTGGCAAGAAGAAGAAATGGCAAAAATTATAAGATACCACATAAGA
TACCATCCACAACAGTTTACTACCCTTGCAATGCTTTATACGATTTTATG
ATAGACATGCTGTCAAAATAAATTTATGTTACGACCAATAAGAATCATTG
GTGTATAGGTTGATTATTGACTAATAAATGATTATAATTAAAGACACATG
TCAATATCATTACACTGATTTCACTTACAATTATATTTAAAGGGGTGTAG
AGGAGTAGTACCTTTCCGAGATGTCTCTCGCATACTGGTCTCCATGCATC
CTTCTGAACTGTGGTGGTATTAGCTTATTAATTAAATTTGCTGTTGTTCC
TGTGTTCCAGTTTGTTGGTTGGCAATGATTGTTTGGTTGGCAATGATTGT
TTGGTTGGCAatggttggttggttgattgGTTTGTTGGTTTGACTGCCAT
GTTTGGATTAATTTACCCTCATGTCTGGGTACGATGAGGTTTATTTATTG
TAAATAGATTTTACAAGACAAAATTAAAATACTTACAATTAGTTTTTTAA
GATATTAACTAATGGAAAGCTAACACGTGAATCTTCAGGGGATGTAAGAT
GTCAAATCGGACTAAATTATAATCTAACTGGCAGTATTTAAAACCTTCAA
ACAGCCATTATTTCTCTCAATTGAAATGGACCTTCTTTGTTCAGGTCTAC
CTCTACAGTTTCCCATACATACCTGCCCAAGACAATTTCTGACCATAAAA
ACAAGTACAATACTTTCCTCTTCTATCGACTTCTGATGGAATGCCACATT
GCTACATTAGTTCACTGGTGAAAAGGTCAGATCTTGCTTTGGTTTGGATA
GGCTGAGTCTTTTGCTTTTGAGTGTTTCATAATTGATTGATTTCGGTCTC
AAGTTTGTGGTTTTCCACCAACGATTATCCAGGGCTTCTGACTGATTCTT
CAAGATCTCTTTAACATTGAACAAAGTATTATCAAGGCTGACAGCAATGC
CCAGTTCAATTCCCAATTAACAGCTACTTTTCGCTCATGCTCTATGCTCT
ATAATGCATAACAATTTGTTCTGATAGATTGCTGCCAGACTCTGGAGTTG
TTGCCAAATGGTAATGCTTGATAtttagaattctttttcctTGAGATGTT
GCAAGTTTAGACCGTGTACGTCTTTATTGAAATGAATAAGTCTAATCTGG
TCTAATTAGAAATCAGTAAGTCGAGATATTCAAATCAcagtttttgactt
tcagcACGAAAACAATATATAATGTCAATGTAAGAACCGAGTGCTGAAGC
TCACTTGTCAAGTAAAAGCTAACTTATTTTATGTACTGCTCTCCCTGCAA
CTCCGATAAACTTATCTGAGGCCTCCACAGTGACACCCCTCGTCATGTCA
TTTTTAGACCTACCTTGAAGGTCCTAGTAATTAACTGATGTCCATTCGTG
CGTCAGCTTGTTTGTTCTGATTTTTGCGCAATGATTCAAAATGAGCAGCC
CGATTTACCAATTTTTTTGGGTAGATTTGGGCTAAAAACTGNCATTAGTT
CACTGGTGAAAAGGTCAGATCTTGCTTTGGTTTGGATAGGCTGAGTCTTT
TGCTTTTGAGTGTTTCATAATTGATTAATTTCGGTCTCAAGTTTGTGTTT
TTCCACCAACGATTATCCAGGGCTTCTGACTGATTCTTCAAGATCTCTTT
AACATTGAACAAAGTATTATCGAGGCTGACAGCAATGCCCAGTTCAATTC
CCAATTAACAGCTACTTTTCGCTCATGCTCTATGCTCTATAATGCATAAC
AATTTGTTCTGATAGATTGCTGCCAGACTCTGGAGTTGTTGCCAAATGGT
AATGCTTGATAtttagaattctttttcctTGAGATGTTGCAAGTTTAGAC
CGTGTACGTCTTTATTGAAATTAATAAGTCTAATTAGAAATCAGTAAGTC
GAGATATTCAAATCAcagtttttgactttcagcACGAAAACAATATAAAA
TGTCAATGTAAGAACCGAGTGCTGAAGCTCACTTGTCAAGTAAAAGCTAA
CCCATTTTATGTACTGCCCTCCCTGCAACTCCGATAAAGTTATCTGAGGC
CTCCACAGTGACACCCCTGTCATTTTTAGACCTACCTTGAAGATCCTAGT
AATTAACTGATGCCCATTCGTCAGCTTGTTTGTTCTGATTTTTGCGCAAT
GATTCAAAATGACACACCTAAAATTTGATGCAGCCCGATTTACCAATTTT
TTTGGGTAGATTTGGGctaaaaactgcctaaaataggACGAAATTACTCT
ATTAGTTTGCAAAAAGACatagggcaaggttctctaaaaatttGCTGAAG
CTtcaggaaaatttcttttttcgtaaaagttag Run BLAST on NCBI transcript from alignment at scaffold_485:380577..383259 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068575 ID=TCONS_00068575|Name=TCONS_00068575|organism=Clytia hemisphaerica|type=transcript|length=2683bp|location=Sequence derived from alignment at scaffold_485:380577..383259 (Clytia hemisphaerica)
ctaacttttacgaaaaaagaaattttcctgaAGCTTCAGCaaatttttag
agaaccttgccctatGTCTTTTTGCAAACTAATAGAGTAATTTCGTccta
ttttaggcagtttttagCCCAAATCTACCCAAAAAAATTGGTAAATCGGG
CTGCATCAAATTTTAGGTGTGTCATTTTGAATCATTGCGCAAAAATCAGA
ACAAACAAGCTGACGAATGGGCATCAGTTAATTACTAGGATCTTCAAGGT
AGGTCTAAAAATGACAGGGGTGTCACTGTGGAGGCCTCAGATAACTTTAT
CGGAGTTGCAGGGAGGGCAGTACATAAAATGGGTTAGCTTTTACTTGACA
AGTGAGCTTCAGCACTCGGTTCTTACATTGACATTTTATATTGTTTTCGT
gctgaaagtcaaaaactgTGATTTGAATATCTCGACTTACTGATTTCTAA
TTAGACTTATTAATTTCAATAAAGACGTACACGGTCTAAACTTGCAACAT
CTCAaggaaaaagaattctaaaTATCAAGCATTACCATTTGGCAACAACT
CCAGAGTCTGGCAGCAATCTATCAGAACAAATTGTTATGCATTATAGAGC
ATAGAGCATGAGCGAAAAGTAGCTGTTAATTGGGAATTGAACTGGGCATT
GCTGTCAGCCTCGATAATACTTTGTTCAATGTTAAAGAGATCTTGAAGAA
TCAGTCAGAAGCCCTGGATAATCGTTGGTGGAAAAACACAAACTTGAGAC
CGAAATTAATCAATTATGAAACACTCAAAAGCAAAAGACTCAGCCTATCC
AAACCAAAGCAAGATCTGACCTTTTCACCAGTGAACTAATGNCAGTTTTT
AGCCCAAATCTACCCAAAAAAATTGGTAAATCGGGCTGCTCATTTTGAAT
CATTGCGCAAAAATCAGAACAAACAAGCTGACGCACGAATGGACATCAGT
TAATTACTAGGACCTTCAAGGTAGGTCTAAAAATGACATGACGAGGGGTG
TCACTGTGGAGGCCTCAGATAAGTTTATCGGAGTTGCAGGGAGAGCAGTA
CATAAAATAAGTTAGCTTTTACTTGACAAGTGAGCTTCAGCACTCGGTTC
TTACATTGACATTATATATTGTTTTCGTgctgaaagtcaaaaactgTGAT
TTGAATATCTCGACTTACTGATTTCTAATTAGACCAGATTAGACTTATTC
ATTTCAATAAAGACGTACACGGTCTAAACTTGCAACATCTCAaggaaaaa
gaattctaaaTATCAAGCATTACCATTTGGCAACAACTCCAGAGTCTGGC
AGCAATCTATCAGAACAAATTGTTATGCATTATAGAGCATAGAGCATGAG
CGAAAAGTAGCTGTTAATTGGGAATTGAACTGGGCATTGCTGTCAGCCTT
GATAATACTTTGTTCAATGTTAAAGAGATCTTGAAGAATCAGTCAGAAGC
CCTGGATAATCGTTGGTGGAAAACCACAAACTTGAGACCGAAATCAATCA
ATTATGAAACACTCAAAAGCAAAAGACTCAGCCTATCCAAACCAAAGCAA
GATCTGACCTTTTCACCAGTGAACTAATGTAGCAATGTGGCATTCCATCA
GAAGTCGATAGAAGAGGAAAGTATTGTACTTGTTTTTATGGTCAGAAATT
GTCTTGGGCAGGTATGTATGGGAAACTGTAGAGGTAGACCTGAACAAAGA
AGGTCCATTTCAATTGAGAGAAATAATGGCTGTTTGAAGGTTTTAAATAC
TGCCAGTTAGATTATAATTTAGTCCGATTTGACATCTTACATCCCCTGAA
GATTCACGTGTTAGCTTTCCATTAGTTAATATCTTAAAAAACTAATTGTA
AGTATTTTAATTTTGTCTTGTAAAATCTATTTACAATAAATAAACCTCAT
CGTACCCAGACATGAGGGTAAATTAATCCAAACATGGCAGTCAAACCAAC
AAACcaatcaaccaaccaaccatTGCCAACCAAACAATCATTGCCAACCA
AACAATCATTGCCAACCAACAAACTGGAACACAGGAACAACAGCAAATTT
AATTAATAAGCTAATACCACCACAGTTCAGAAGGATGCATGGAGACCAGT
ATGCGAGAGACATCTCGGAAAGGTACTACTCCTCTACACCCCTTTAAATA
TAATTGTAAGTGAAATCAGTGTAATGATATTGACATGTGTCTTTAATTAT
AATCATTTATTAGTCAATAATCAACCTATACACCAATGATTCTTATTGGT
CGTAACATAAATTTATTTTGACAGCATGTCTATCATAAAATCGTATAAAG
CATTGCAAGGGTAGTAAACTGTTGTGGATGGTATCTTATGTGGTATCTTA
TAATTTTTGCCATTTCTTCTTCTTGCCAAATCATTAATACACCTTTACCA
ACAAAATGTGATTTCCTAGttaaaatttttacaaagttattgtttttctc
ttttttgtcaCAATCTTTAGCCTCCTCCTCCATATAATAAAAATCTATTT
Ctgataaaatctatttttgataaaagtaaaatacctatttgaaattttag
aaaaaaattacagatctattgttttttttattactttttgttaCAATATG
ACCACCTCCTCCTTTtatataaaattataaaattaaaacaattaaaacaa
tgttaaaatTAGTCTACTCCTACTTAGAAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068575-exon-scaffold_485-1491911889:380577..383259 | TCONS_00068575-exon-scaffold_485-1491911889:380577..383259 | Clytia hemisphaerica | exon |
| TCONS_00068575-exon-scaffold_485-1510915933:380577..383259 | TCONS_00068575-exon-scaffold_485-1510915933:380577..383259 | Clytia hemisphaerica | exon |
| TCONS_00068575-exon-scaffold_485-1575043694:380577..383259 | TCONS_00068575-exon-scaffold_485-1575043694:380577..383259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_485 | supercontig | scaffold_485:380577..383259 . |
Blast
The following BLAST results are available for this feature:
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