TCONS_00068320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068320
Unique NameTCONS_00068320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length379

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068320 ID=TCONS_00068320|Name=TCONS_00068320|organism=Clytia hemisphaerica|type=transcript|length=379bp
tttttcatttcttcttgGGAGTAATTTTGGATCCAATTTTACTATaaata
tcaaagaaatcaaaacaaacaagtccAAAGAATATAAAAAGTTCGCAAAT
CGAGAGAATCGATGCTCCTGTCATCAAGCCAACACAACCACCAAAATTGG
CGAACAAATCTTGCCAAGTGTACGCTGGAACTTCTTCAATGGTTTCCACC
ATGAAGGATTGATAAGTGAAAGCGAATTCGAGAAAGTTCAAATCGGGCGA
TCGATGAAAGTCTAAGGAGATTTTAATATCTTCTTCATAACAGGGCTGTA
TCGTGCATTGCGCATTGCATTTCGATGTCACTTTATCATCAAGCTCAACT
TCTCGTAAACAGGCGTCTCCTGTGACGTC
Run BLAST on NCBI

protein sequence of TCONS_00068320-protein

>TCONS_00068320-protein ID=TCONS_00068320-protein|Name=TCONS_00068320-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
DVTGDACLREVELDDKVTSKCNAQCTIQPCYEEDIKISLDFHRSPDLNFL
EFAFTYQSFMVETIEEVPAYTWQDLFANFGGCVGLMTGASILSICELFIF
FGLVCFDFFDIYSKIGSKITPKKK
Run BLAST on NCBI

transcript from alignment at scaffold_482:72409..72787

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068320 ID=TCONS_00068320|Name=TCONS_00068320|organism=Clytia hemisphaerica|type=transcript|length=379bp|location=Sequence derived from alignment at scaffold_482:72409..72787 (Clytia hemisphaerica)
GACGTCACAGGAGACGCCTGTTTACGAGAAGTTGAGCTTGATGATAAAGT
GACATCGAAATGCAATGCGCAATGCACGATACAGCCCTGTTATGAAGAAG
ATATTAAAATCTCCTTAGACTTTCATCGATCGCCCGATTTGAACTTTCTC
GAATTCGCTTTCACTTATCAATCCTTCATGGTGGAAACCATTGAAGAAGT
TCCAGCGTACACTTGGCAAGATTTGTTCGCCAATTTTGGTGGTTGTGTTG
GCTTGATGACAGGAGCATCGATTCTCTCGATTTGCGAACTTTTTATATTC
TTTggacttgtttgttttgatttctttgatatttATAGTAAAATTGGATC
CAAAATTACTCCcaagaagaaatgaaaaa

Coding sequence (CDS) from alignment at scaffold_482:72409..72787

>TCONS_00068320 ID=TCONS_00068320|Name=TCONS_00068320|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_482:72409..72787 (Clytia hemisphaerica)
GACGTCACAGGAGACGCCTGTTTACGAGAAGTTGAGCTTGATGATAAAGT
GACATCGAAATGCAATGCGCAATGCACGATACAGCCCTGTTATGAAGAAG
ATATTAAAATCTCCTTAGACTTTCATCGATCGCCCGATTTGAACTTTCTC
GAATTCGCTTTCACTTATCAATCCTTCATGGTGGAAACCATTGAAGAAGT
TCCAGCGTACACTTGGCAAGATTTGTTCGCCAATTTTGGTGGTTGTGTTG
GCTTGATGACAGGAGCATCGATTCTCTCGATTTGCGAACTTTTTATATTC
TTTggacttgtttgttttgatttctttgatatttATAGTAAAATTGGATC
CAAAATTACTCCcaagaagaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042635XLOC_042635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068320-exon-scaffold_482-1491911889:72409..72787TCONS_00068320-exon-scaffold_482-1491911889:72409..72787Clytia hemisphaericaexon
TCONS_00068320-exon-scaffold_482-1510915933:72409..72787TCONS_00068320-exon-scaffold_482-1510915933:72409..72787Clytia hemisphaericaexon
TCONS_00068320-exon-scaffold_482-1575043694:72409..72787TCONS_00068320-exon-scaffold_482-1575043694:72409..72787Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068320-proteinTCONS_00068320-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_482supercontigscaffold_482:72409..72787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.05517	0.435665	1.69147	1.1119	18.3209	19.603	2.48855	1.01737	1.25332	0.160576	49.9151	25.5359	1.21066	0.885773	0.478566	0.217543	1.12032	0.599915	0	0.305397	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001873ENaC
Vocabulary: Biological Process
TermDefinition
GO:0006814sodium ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005272sodium channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006814 sodium ion transport
cellular_component GO:0016020 membrane
molecular_function GO:0005272 sodium channel activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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