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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00068285 ID=TCONS_00068285|Name=TCONS_00068285|organism=Clytia hemisphaerica|type=transcript|length=1074bp
ATACATTTGTGGAATAGCTCCACATTTTTCAAACACAGCCTCCCAGAAGC
AACCTTTCTTACATTTTGTGACTGTGTAGACTCCGGTGAATTTGTTTTGT
GTGTAAGTACCGCTGCCTTTGATGCATTCAGTATAAGGAAGCCCCAGTCT
TGTAACTTTTTTCTTCACGACATTGACGTGGTAAAATCCTTCACTTGCCC
AATAGATGGTCGGTGAGGCTTCGTGGAAGGTCTCATAGTCAGGGTTTACG
TAGAGCTCGCTCCAAAGGTCACCTGTTCGGTTAGCAACGAGTTGGACGGA
AAAGATATCAGAGGGAAAAGTCTGAGTGAAACCACTGACCGTGAAACAAT
TTGTTGTGTCGTCAAATTTCACAAGATGGTTCAACTTCTTTGATTTGACG
TAATCACTGGAGTAGAATAAAACCTCGACTATAGTTCTTCCATCGTATCC
ACACTTTGTCAAGTTGTTACCACACTCACGCATGTCGACGCTCACAAGTT
GAGGTCTCGTGTAAAAAGGGGGAGTTCCACTAAAATGTCGGCGTTCTCTG
TTAATCCCATCGTAATTGCAGATTGTGATTGAGGGCACTGCAATTTCATT
TTCAGCAGTTATGGCGGTATGTGTGACGCTGTGGTCACCTAAATAAGCTT
CAAAATGTTCTTTAGAAATGAGGAGAGCTGTGAGTAAGGAGGCCATCACT
AGTAAGGTCCATATGACTTTGCTGAACGGTCGACCGGTAGCGATGCGACT
TAACCCATGAATAGTGAGACCTTCAGCATAGCTTTGACGCTCGTCGGCAA
TTTTCTCTTCCATCACATCGAAATTGCTTAGAGCTGCGGATGTTTTGGGT
TTGCGTACATTGTTTTGTTCCAAGTCCACATCTCGCGTCTTCTTCTCCAA
ACTTTCCGTTTTGTCCAGGGATTCTAAATCTTCGTGTGATTTTCCGGAGG
AAAGTTTCCGAATATCACTTTTACTTTTCTTGACTTCATGATCGATGTTG
GCAACCTGTTTCGTCAAAAgttcaatctttttcaataacTGCACCGTATC
CGACATTTTCACTCAGATCTTTTC Run BLAST on NCBI transcript from alignment at scaffold_482:71284..78201- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00068285 ID=TCONS_00068285|Name=TCONS_00068285|organism=Clytia hemisphaerica|type=transcript|length=6918bp|location=Sequence derived from alignment at scaffold_482:71284..78201- (Clytia hemisphaerica)
ATACATTTGTGGAATAGCTCCACATTTTTCGAATACTTTCTCCCAAAAAC
AACCTTTCTTGCATTTATTAACAGTATAGTTCCCTTTGAATTTGTTTTGT
GTATAAGTACCTTGACCTTCAATGCAATCAGTATAAGGAAGGCCAAGACG
TTGAATGACCTTCTTCTCGACATTGACATGGTAAAAACCTTCACTTGCCC
AATAAATATTCGGGTTAGCCTCAAAGAATGTTTCACCTGCCGGATTGATG
AAGATTTCAGTCCAAAAGTTATCCGTTCTATCGGCGACAGATCCGATGGA
GAAGATATCGGATGGAGACATTTGTGAAAATTCGCTTACGGTAAAGCAAT
TTGTGGTGTCATCAAATTCTACCAGGTTGTTCAGCAGATGATTATGTTGG
AAGTCTGAAGTGATGTTTTTCACTTGTAGCAGCGTTGCTTTCTGGTACCC
ACATTTTGTTAAGTTACGTCCACACTCTCTCAGACTGGAGACATTCACCA
ATTGCGGTCGAGTATAGATAGGTGAACCTCCAGCAAAGTGTTTTCGTTCT
CTTACGATACCCAAGTAGTTGCAGACAGTAATAGTAGGATATTCCATCTC
CTTCACTGGTATGAGCTGCGTCTTGATTAAACTATGATCCATCAAAAAAG
CTTCCAAATGCTCCTTGGAGATGACGAATGCTGCGAGGAAAGATCCAATA
ACCAGAATGGACCATATAACCTTACTCAACGGACCTCCTGTCGCAATACG
GTTTGCTCCATGAATGGTTAGCCCTGCAGCATAACTTTGTTTCTCATTTG
CTATTGTTCTCTCCATCTCCTCCGCGTCCACCAAGAATCGCGGTAGATTT
TGCACGCTTTTTTCAGTCTTCTTTCTTTCCCTTCTTTGTGGTTCCTCATC
TGCATCAGCTATTACAAAGGATTTGGATGACCCAGGACTCTCGAAACTGA
TATTAGTGCTTCCTTCCTTGCGAAATGGTTTTTCAATTTCGTAGTGTAAA
GACATACCATCCAGTTGATCTGGCGTTGAAGAAGCACTCCTATTAATCTC
TTTTTCAGAACTGTCTATTGACTTCAAGCTCAAAGCTTTGGTGATCTCAT
CTGGAGGATTGTTGGTAGGTTGTGATTGATGCTTTTCGCCATTCAATGCC
TGGATATCACTTCTATTTTGATTGATTTTAGATTCCAAAGATGAAAACAA
CAATGACAACTTATCAATCTTCTTTTCTAAACCTTTGACTTCCATTTTGT
GTAATTCTGAATTTGTTTTTTCTGATAGCTCTTAGAAAAGAAATTCTTCT
GTCAAATAAAAAACTATTCGCCGAAGAAATCAGACATTCGCTCTACCGTT
CACTTCATAAATTGAAAAGAAAAATGTTTTCAAATGGTAAAATTTTCCAT
TCTTTTGTATTTCAGATTGACTGAATATAATGAAATTGATAATTCCTTTT
GTTCGCAATTTCAAATAAATGATTGATAGTTAACTACTGTTAAAAACTAA
TTAAAAAATTGAAAAGACTAGATTCTAAGCACAGTTTGTATCCTATGAGC
AGCTGAACTTTATTAAGGAAGATTGAAAAAGACCTTGAATTGTTTTTAAA
ATGACAGCACAGCGCGAAATGTTGAAGCTCCTCTTCGGTCATGTAAATAA
TGGACATCGAAAAGAGGTCCATTTACAATTGTTGTGTCGATAGGATATGA
CAATGTGTTAGTTTTGACTCGATCCGCTAAAAAGACAAGACTAAATTAGT
TGACTGCGGAAAATTTTTTTTAATTATAGATACCAACAAACTTCGGAAAA
ATGAAAATATTAAGAATCACAGCGGTGTTTATAGTAACCAAGCTTCACCC
AAGATTTTGGATGTTCGTCATGGTTATACTTTTCTCTACGTTTTTGAACG
CTGAATAGAATCTGGATTGGTCGGCACAGAGTCGATATATGATTTAGACC
CGTGCTTTTCACGGTACAGCCCTTGCCCTTGGAAAACCTTATAATAAATT
TTCATACATTTTCATATTTTCTATAATCTCAGTGAGATAAACAGAATCAC
AAATTGATGAAGAAAAACTTCGAATTAACAATTGCTACGGGGTGTTTCGT
GCTGGCGCGATCTTGAAGCAATGCAGTTAGTTCTTTATTTCTCGATATTT
ACAATCTCAGATAAATTATTTACAAATTAATAGCAAATTCTTAATTACTT
TAATCTTTTTAAGGTATTAATAATCAGCATACAATCTCAAACTTCCTAAT
GACCATCATCCTTCATCTTTGAGTGATTCTTAAAATAATCGAAGAGGACG
AGTCCAAAAAAGATGAACAGTTCAAAGACTGAAAGAATGGAGAGACCATT
CATGAGACCAACGCAACCACCAAAATTCGCAAACAAATCCACCCATTTTT
CTCTTGGTGTTTCTTCGTACACTTTCACCAAAAAGTATTCGTATCCAAAA
GCTAATGAAAGAAGATTGTTCTGATTCTTTGTGGTGTGATATTTTAAAGA
CATTTTGATGTCTTCTTCGTAGCATGGTTGTAACCTACAAAAAGCGTTGC
ACTTATTGTATACCTCGTGGTCTTCTTCCACTCCTTTTAAGCAAGTCTCT
GCCTCAGTATCATTCAAACGAAGCTTGTTCTCAAACTTGTGTGGTTCTCG
CATGTGTTTCTTATACATGTGTGGAATAGCTCCACATTTTTCAAAAACTT
TCTCCCAAAAACAACCTTTCTTGCATNGAGTACACGTTTTTTTTATTAGA
ACGCCTAAAATTTGGCTGAGCCTGGATGTACTTATTTTTTTGGCAATTTT
CAGCCTAAAATGCTCTTACATAACGTTCTTAATTTTTCATACTACTCTAC
TCGACAATATCATGCAAAATAAAGAGCACTTAAAATTGGTTAAATTTGGA
CAATATTTGACTCTCGATTTTATAAAATCCATCCCTAAGTTCGGTTAAAA
CTGCTTGAAAAGAGGAAAAAAATTGTAGTTTCTTGTCATTTTTTTCAAAA
CTGAGGCTTGGCATGTTCTTACGATGTTCTTAATTTTTCGACGAATTTCA
GCCTCAATGTTCTTATAAACTGGGTTTTAATAAAAAAACGTGTAGTTCTT
TTAAGTTAGGTCTTTATTTCTCGATACTTACAATCTCAGATAAATTATTT
ACAAATTAATAGCGAATTTTTAATTACATCAATCTTTTTAACGTATTAAT
CTTTTTAACAGACAGTCTCAACTTTCTAATGACCATCATCTTTCATCTTT
GAGTGATTCTTGAAATAATCGAAGAGGACGAGTCCAAAAAAGATGAACAG
TTCAAAGACTGAAAGAATGGAGAGACCATTCATGAGACCAACGCAACCAC
CAAAATTCGCAAACAAATCCACCCATTTTTCTCTTGGTGTTTCTTCGTAC
ACTTTCACCAAAAAGTATTCGTATCCAAAAGCTAATGAAANCGGTGTTTC
TTCGTAAACTTTGACCAAAAAGTTTTCGTATCCAAAAGCTAATGAAAGAA
GATTGTTCTGATTCTTTGTGGTGTGATGTTTTAAAGACATTTTGATGTCT
TCTTCGTAGCATGGTTGTAGCCTACAAAAAGCGTTGCACTTATTGTATAC
CTCGTGGTCTTCTTCCACTCTTTTTAAGCAAGTCTCTGCCTCAGTATCAT
TCAAATGAAGCTTGTTCTCAAACTTGCGTGGTTCTCGCATGTGTTTCTTA
TACATGTGTGGAATAGCTCCACATTTTTCGAACACTTTCTCCCAAAAACA
ACCTTTCTTGCATTTATTAACAGTATAGTTCCCTTTGAATTTGTTTTGTG
CATAAGTACCTTGACCTTCAACGCAATCAGTATAAGGAAGACCCAGTCTG
GTGATTATTCTTTTGCGGATGTCGACACGATAGTCTCCTTCACTGGCCCA
ATAAATACGAGATGACGCTTCTTGAAAGCCTTCAGATGTTGGGTTGATGT
AAAGCTCACTCCACGTGTCAACAGATCGATCCGCAACAGCATTCAAGTTA
AGACGTTTGGCCGTTGATCTCTGCGTGTATCCACTTAATGTCAAACAGTT
TGTTGTATTGTCGAATTCAATGAATTGGTTTTGTAGAACATGATTTGAGT
AATCTCCCTTAGCACTGTAAGCTTTCATCAACGTTGTTCCGTTATAACCA
CACTTTGTTAAGTTGAAGCTGCATGCAACCAAGTCAAAGCTGTCGTCTAC
CAGTATTGGACGCTTAAACGTTGGCTTACCACCACCGAAAGATCGTCTTT
CTCTGTTGATACCATAATAACTACATATAGTGATGGCTGGATATTCCATC
GTTTTTTCTCTGACAACTTTCAATGTGATGATACTTTGGTCGTCTAAGTA
TTCCACCCAATGATGTCTGGAAATGTAGCCAGCAAGAATAACAGAAGTAA
CTACGAGGATAGACCAAATGACCTTGCTTTTGATTCCACCAGTTGCAATT
CGACTTGCTCCATGAATGGTAAGTCCTTCAGCATAACTCTGTTTCTCACT
TTTGATACTTTTTATTGCTTTCTCAATAATATTGATAGCTTCAACACTTG
AACATCCACTTAAGACAGAGTTTCGTTTCCTACAGCTTTCTTCATTTTCA
CCAGATCTTTCGTTAAACTCGGCCATGTTGATGAGAGAAGTTTCTTCATC
CTTAGTACTGATTTTGCGAAGCTCGTTTTTGTTTTCATCAATTTCATTTT
CAAGATGTGCGATTTTGTGCGTAAGATATTGAATCTTTTGCTGCAACTTT
TTAGCATCCATTCTTCAGGTAACTGGGCCTCGACTTCTGATAGTTGTTAT
TAACTTCAAAATTGAAGTTAGGGGACAGATAAATAGTTAAAATTTAACAA
GAAGAAAATTCTAATTAGCTTCAACCATCTGGTCCATGTTTGGCACAGTG
TGCGGTGAAATTCAAATTATTTTTTGTGTTGAATATTTCCAACAGGCTCA
ACTTTCCAATCTGGTCATGACATATCTTTTATTTCTTTGAAAACAACAAA
GTCAAAAAAAGCATTGTTCAAACTTATATTCTATACTTCTATCATATGAC
TTCATCATTTAATTTTTTTCAGATATTCTTGAATAAACTTTGGTATCTTG
TATCAGTATGTCGAAGTTGCTACACCTCCCCTACCCCTACCCCTACATGC
AAGGCTTTGAAAAGATCGCTAACATCTCTTCGAACTGATTGAGATGTGAA
TTTTAACATTAAGAATTCCACGCAAATTATCTTTTCGAAAACATCCTGAA
ATATTTACAAGCACACTATCAAGATTTTTGACTGAAGATCGTGACGAAAA
GTTTCGTGAAACTTTAAGTATCAAACAATTCTTATCTCAACTTCAATTTA
TTGTGTACAAGCACACTATAAAGTTAGTATAAATTATACAATATAATTAA
GAACATTAAGAATATTTTTCATTTCTTCTTGGGAGTAATTTTGGATCCAA
TTTTACTATAAATATCAAAGAAATCAAAACAAACAAGTCCAAAGAATATA
AAAAGTTCGCAAATCGAGAGAATCGATGCTCCTGTCATCAAGCCAACACA
ACCACCAAAATTGGCGAACAAATCTTGCCAAGTGTACGCTGGAACTTCTT
CAATGGTTTCCACCATGAAGGATTGATAAGTGAAAGCGAATTCGAGAAAG
TTCAAATCGGGCGATCGATGAAAGTCTAAGGAGATTTTAATATCTTCTTC
ATAACAGGGCTGTATCGTGCATTGCGCATTGCATTTCGATGTCACTTTAT
CATCAAGCTCAACTTCTCGTAAACAGGCGTCTCCTGTGACGTCATCAACA
AATGTTTTGTTGTCAAACCGGTGTGGCTCACGTAAATGTTTCTTATACAT
TGGCGGAATAGCTCCACATTTTTCAAACACAGCCTCCCAGAAGCAACCTT
TCTTACATTTTGTGACTGTGTAGACTCCGGTGAATTTGTTTTGTGTGTAA
GTACCGCTGCCTTTGATGCATTCAGTATAAGGAAGCCCCAGTCTTGTAAC
TTTTTTCTTCACGACATTGACGTGGTAAAATCCTTCACTTGCCCAATAGA
TGGTCGGTGAGGCTTCGTGGAAGGTCTCATAGTCAGGGTTTACGTAGAGC
TCGCTCCAAAGGTCACCTGTTCGGTTAGCAACGAGTTGGACGGAAAAGAT
ATCAGAGGGAAAAGTCTGAGTGAAACCACTGACCGTGAAACAATTTGTTG
TGTCGTCAAATTTCACAAGATGGTTCAACTTCTTTGATTTGACGTAATCA
CTGGAGTAGAATAAAACCTCGACTATAGTTCTTCCATCGTATCCACACTT
TGTCAAGTTGTTACCACACTCACGCATGTCGACGCTCACAAGTTGAGGTC
TCGTGTAAAAAGGGGGAGTTCCACTAAAATGTCGGCGTTCTCTGTTAATC
CCATCGTAATTGCAGATTGTGATTGAGGGCACTGCAATTTCATTTTCAGC
AGTTATGGCGGTATGTGTGACGCTGTGGTCACCTAAATAAGCTTCAAAAT
GTTCTTTAGAAATGAGGAGAGCTGTGAGTAAGGAGGCCATCACTAGTAAG
GTCCATATGACTTTGCTGAACGGTCGACCGGTAGCGATGCGACTTAACCC
ATGAATAGTGAGACCTTCAGCATAGCTTTGACGCTCGTCGGCAATTTTCT
CTTCCATCACATCGAAATTGCTTAGAGCTGCGGATGTTTTGGGTTTGCGT
ACATTGTTTTGTTCCAAGTCCACATCTCGCGTCTTCTTCTCCAAACTTTC
CGTTTTGTCCAGGGATTCTAAATCTTCGTGTGATTTTCCGGAGGAAAGTT
TCCGAATATCACTTTTACTTTTCTTGACTTCATGATCGATGTTGGCAACC
TGTTTCGTCAAAAGTTCAATCTTTTTCAATAACTGCACCGTATCCGACAT
TTTCACTCAGATCTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00068285-exon-scaffold_482-1575043694:78179..78201 | TCONS_00068285-exon-scaffold_482-1575043694:78179..78201 | Clytia hemisphaerica | exon |
| TCONS_00068285-exon-scaffold_482-1575043694:71284..72334 | TCONS_00068285-exon-scaffold_482-1575043694:71284..72334 | Clytia hemisphaerica | exon |
| TCONS_00068285-exon-scaffold_482-1510915933:78179..78201 | TCONS_00068285-exon-scaffold_482-1510915933:78179..78201 | Clytia hemisphaerica | exon |
| TCONS_00068285-exon-scaffold_482-1510915933:71284..72334 | TCONS_00068285-exon-scaffold_482-1510915933:71284..72334 | Clytia hemisphaerica | exon |
| TCONS_00068285-exon-scaffold_482-1491911889:78179..78201 | TCONS_00068285-exon-scaffold_482-1491911889:78179..78201 | Clytia hemisphaerica | exon |
| TCONS_00068285-exon-scaffold_482-1491911889:71284..72334 | TCONS_00068285-exon-scaffold_482-1491911889:71284..72334 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_482 | supercontig | scaffold_482:71284..78201 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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