TCONS_00068199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068199
Unique NameTCONS_00068199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068199 ID=TCONS_00068199|Name=TCONS_00068199|organism=Clytia hemisphaerica|type=transcript|length=663bp
GGTTATATGATATTTAACTTCAATTCTTAAGTTACTGTTTTATCCCTCAT
TTCATTCTGACATCATAACCAACActaaagattttcagtcggaCATTAAC
CGACGCCTATTTGCAACCCTGCTTATTGGCCATATGCATACTATTCAAGG
TTAGAGCCTACCTTTACAGAAATTTGTATATGCTTTTGCTTTCAAATACA
TCAGAAACTTGCAAGGTTATCATCAAAATTTCAGAGAGATTCCCACAAGT
ATAACTTCATCATTTGCATATTTTAATGAAAGTTGGTATCTTGAGCTTTT
CTGAAGTTTTGTCGATCAAAATCCCCTCAACTTTAATAAGTTcttcctat
tcatgatattataccaccctgaaattttcttgttaaaaagatatccctat
caaaagttgaaatctgtaaacccactttccctagcCCCTTGCAGGCAAAA
TCACATTCATTTACCTCGCCTCAACCCCCAAACAATTTTAAACACAACAG
TGGAGGGTACATTTTCCCAGGGCCATTTCCTTTAAGTTTGAAATACGAAA
ACCATCATCAAAAAGTGTATATTTCGGTGCCAATTTTATATGCCATTTCT
Ggggctaaattgtcaacctcaaatgtctaaaaagttgctattttagcgga
accaaaatctcaa
Run BLAST on NCBI

transcript from alignment at scaffold_48:331730..332392

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068199 ID=TCONS_00068199|Name=TCONS_00068199|organism=Clytia hemisphaerica|type=transcript|length=663bp|location=Sequence derived from alignment at scaffold_48:331730..332392 (Clytia hemisphaerica)
ttgagattttggttccgctaaaatagcaactttttagacatttgaggttg
acaatttagcccCAGAAATGGCATATAAAATTGGCACCGAAATATACACT
TTTTGATGATGGTTTTCGTATTTCAAACTTAAAGGAAATGGCCCTGGGAA
AATGTACCCTCCACTGTTGTGTTTAAAATTGTTTGGGGGTTGAGGCGAGG
TAAATGAATGTGATTTTGCCTGCAAGGGgctagggaaagtgggtttacag
atttcaacttttgatagggatatctttttaacaagaaaatttcagggtgg
tataatatcatgaataggaagAACTTATTAAAGTTGAGGGGATTTTGATC
GACAAAACTTCAGAAAAGCTCAAGATACCAACTTTCATTAAAATATGCAA
ATGATGAAGTTATACTTGTGGGAATCTCTCTGAAATTTTGATGATAACCT
TGCAAGTTTCTGATGTATTTGAAAGCAAAAGCATATACAAATTTCTGTAA
AGGTAGGCTCTAACCTTGAATAGTATGCATATGGCCAATAAGCAGGGTTG
CAAATAGGCGTCGGTTAATGtccgactgaaaatctttagTGTTGGTTATG
ATGTCAGAATGAAATGAGGGATAAAACAGTAACTTAAGAATTGAAGTTAA
ATATCATATAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042575XLOC_042575Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068199-exon-scaffold_48-1491911889:331730..332392TCONS_00068199-exon-scaffold_48-1491911889:331730..332392Clytia hemisphaericaexon
TCONS_00068199-exon-scaffold_48-1510915933:331730..332392TCONS_00068199-exon-scaffold_48-1510915933:331730..332392Clytia hemisphaericaexon
TCONS_00068199-exon-scaffold_48-1575043694:331730..332392TCONS_00068199-exon-scaffold_48-1575043694:331730..332392Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:331730..332392 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.547014	0.533424	1.76959	0.865634	0.843061	0.333099	0.502337	0.282169	0.131702	0.407836	0.158342	0.104088	0.363802	0.107946	0.266239	0.190477	0.410641	0.240511	0.332279	0.521558	0.377774	0.221118	0.179199	0.244376	0.251702	0.224638	0.107152	0.114356	0.0867346	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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