TCONS_00068181 (transcript) - C. hemisphaerica

Overview
NameTCONS_00068181
Unique NameTCONS_00068181
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00068181 ID=TCONS_00068181|Name=TCONS_00068181|organism=Clytia hemisphaerica|type=transcript|length=283bp
CTGTGATGAAAACCTTTGAGGAGGTTTGCGGCTGTTGTAATTCATCTCTA
ATTATTCAATTATTCATATCTGCGAAAATTTTACACCTCTTGTCAAATAT
TAGCCAGAAAACCctcaccctcgcgagccagcgAAGCCGAAACTCGGTCT
CTGTTTTAGCCAAACAGCTTGTACAGCACTTTCTTGCCTGCAACCGACTT
TGGGTGATACCTGGCCCTCGCCAGCTTACAGTTGCTTCGCTGCCTCGCGA
GGGCTGAGGGTTTCATTGcttgtcaaataaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_48:78295..78577

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00068181 ID=TCONS_00068181|Name=TCONS_00068181|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at scaffold_48:78295..78577 (Clytia hemisphaerica)
tttttatttgacaagCAATGAAACCCTCAGCCCTCGCGAGGCAGCGAAGC
AACTGTAAGCTGGCGAGGGCCAGGTATCACCCAAAGTCGGTTGCAGGCAA
GAAAGTGCTGTACAAGCTGTTTGGCTAAAACAGAGACCGAGTTTCGGCTT
cgctggctcgcgagggtgagGGTTTTCTGGCTAATATTTGACAAGAGGTG
TAAAATTTTCGCAGATATGAATAATTGAATAATTAGAGATGAATTACAAC
AGCCGCAAACCTCCTCAAAGGTTTTCATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042557XLOC_042557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00068181-exon-scaffold_48-1491911889:78295..78577TCONS_00068181-exon-scaffold_48-1491911889:78295..78577Clytia hemisphaericaexon
TCONS_00068181-exon-scaffold_48-1510915933:78295..78577TCONS_00068181-exon-scaffold_48-1510915933:78295..78577Clytia hemisphaericaexon
TCONS_00068181-exon-scaffold_48-1575043694:78295..78577TCONS_00068181-exon-scaffold_48-1575043694:78295..78577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:78295..78577 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.463763	0	0	4.4894	1.0136	3.66858	4.57931	6.41216	9.92812	6.74553	8.23503	1.89775	1.31389	1.62029	3.18784	1.42806	5.12299	7.58324	4.23217	3.67852	6.72846	3.27173	1.48724	0	0	3.26056	2.08785	5.27854	6.4536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00068181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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