TCONS_00067944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067944
Unique NameTCONS_00067944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067944 ID=TCONS_00067944|Name=TCONS_00067944|organism=Clytia hemisphaerica|type=transcript|length=486bp
CTCCTCTCAttaaaaatttcacaatttttcaaTGATGAAGAAAGTTATGT
ATTGgtattaacattttcaaaaatggcCGTTGTTCCTAAACTAAAACCTT
TGGGGATTATGGAAAAGCTTTTTCATACGAAGGAATAATTTGCGAAACAA
TAGACAATACACCAGCAATCATAAATACTTGGACGAAAAAATTTTAGTTA
GAAATTTCTCTGGTATTTTTACAGcacaaaaattacgaaaaacggtcaaa
attatttacaataaaaactCTTTGGTCTAAAAAATGTCACTTTTTCGATT
ACAAAACTACTCAACTGCAGTTTTCACAaatctttctaaattttacTGTT
TACTACTAAATATTTTCCTATTTCATGGGATCCGTGCATCTGTTacatgc
tattttctattcaatttacagtggaaaaatgcacaaatctgtgcagattt
cccttcaagaaagacgttgaaaaaaattaaattttg
Run BLAST on NCBI

transcript from alignment at scaffold_477:90581..91066

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067944 ID=TCONS_00067944|Name=TCONS_00067944|organism=Clytia hemisphaerica|type=transcript|length=486bp|location=Sequence derived from alignment at scaffold_477:90581..91066 (Clytia hemisphaerica)
caaaatttaatttttttcaacgtctttcttgaagggaaatctgcacagat
ttgtgcatttttccactgtaaattgaatagaaaatagcatgtAACAGATG
CACGGATCCCATGAAATAGGAAAATATTTAGTAGTAAACAgtaaaattta
gaaagattTGTGAAAACTGCAGTTGAGTAGTTTTGTAATCGAAAAAGTGA
CATTTTTTAGACCAAAGagtttttattgtaaataattttgaccgtttttc
gtaatttttgtgCTGTAAAAATACCAGAGAAATTTCTAACTAAAATTTTT
TCGTCCAAGTATTTATGATTGCTGGTGTATTGTCTATTGTTTCGCAAATT
ATTCCTTCGTATGAAAAAGCTTTTCCATAATCCCCAAAGGTTTTAGTTTA
GGAACAACGgccatttttgaaaatgttaatacCAATACATAACTTTCTTC
ATCAttgaaaaattgtgaaatttttaaTGAGAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042427XLOC_042427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067944-exon-scaffold_477-1491911889:90581..91066TCONS_00067944-exon-scaffold_477-1491911889:90581..91066Clytia hemisphaericaexon
TCONS_00067944-exon-scaffold_477-1510915933:90581..91066TCONS_00067944-exon-scaffold_477-1510915933:90581..91066Clytia hemisphaericaexon
TCONS_00067944-exon-scaffold_477-1575043694:90581..91066TCONS_00067944-exon-scaffold_477-1575043694:90581..91066Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_477supercontigscaffold_477:90581..91066 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.128078	0	0	0.141877	0.172721	0.136486	0.164665	0.58743	0.863434	1.0695	0.519043	0.836261	1.3629	0.353845	0.290909	0.468285	0	0.394195	0.13615	0.284943	0.123834	0.181205	0.293705	1.46861	1.37512	1.71817	1.05373	0.74971	1.27941	0.144836
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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