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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067943 ID=TCONS_00067943|Name=TCONS_00067943|organism=Clytia hemisphaerica|type=transcript|length=812bp
TACGGATTTTTTGTCTTTGAACATGTAAATGCAGGGATTAGCACAACTAT
TCCCAAGAAAAATCAGATTGGTTATTTGATATAAGTAACCGCTTTCAATC
ACACCACAAGCATACAGAGTGTGTGAGAAAATGGTTAAACATGTACATGC
GAAATAGACACCAATCAGCCAAAGTGAGCGCCGCACAAGCTTCTTAGAGA
TGCGCTCTGTTACTTGGGCATTCAATTCTCGTTGGATTGTTGAGTTTGCT
CTTACGGCGAccagttttcttgattttttgaagacaCATAAGATCATGAG
GTATAGCACTGGTAAAGATATGATTGTGGTGATGGTGATGGCAAAAGAAA
TATAATTGTTGAGTACATTTCCTAGAATCACATTGATAAGCATCGGGAAG
GCTGGTACAAACCAACACAACACTATTAAGATCCATAACCGCTTCTCTGT
TATTAGATCATTAAAAGTGCTTGTTCTTGAAATCTTGAGATATTTGATAG
CGGCTAACATGATGATTGTCAAAGATGAAGTTGAGGTCATGCTTAACAGG
ACCAAACCAAAAATGGCGATTGGGAACGATCCAAAATAAAATGTCCAAAA
GCTTAGCCACGGATAAACTGGATATACAGTGATTGAAACCAAAGCATCGC
AAACAGCAAGTGATAATAAAATCAGATCAATCTTATCTCGATCGTTCGAG
ctttgattctttttataaaTAACGATGATGGAGACAACATTCCCAATGCC
ACCAAATATTGTCATCAAACCATAACATATTGTCATGAATATACGGAAAT
TAACAGGTAGAC Run BLAST on NCBI protein sequence of TCONS_00067943-protein >TCONS_00067943-protein ID=TCONS_00067943-protein|Name=TCONS_00067943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=270bp
LPVNFRIFMTICYGLMTIFGGIGNVVSIIVIYKKNQSSNDRDKIDLILLS
LAVCDALVSITVYPVYPWLSFWTFYFGSFPIAIFGLVLLSMTSTSSLTII
MLAAIKYLKISRTSTFNDLITEKRLWILIVLCWFVPAFPMLINVILGNVL
NNYISFAITITTIISLPVLYLMILCVFKKSRKLVAVRANSTIQRELNAQV
TERISKKLVRRSLWLIGVYFACTCLTIFSHTLYACGVIESGYLYQITNLI
FLGNSCANPCIYMFKDKKSV Run BLAST on NCBI transcript from alignment at scaffold_477:36920..37731 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067943 ID=TCONS_00067943|Name=TCONS_00067943|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at scaffold_477:36920..37731 (Clytia hemisphaerica)
GTCTACCTGTTAATTTCCGTATATTCATGACAATATGTTATGGTTTGATG
ACAATATTTGGTGGCATTGGGAATGTTGTCTCCATCATCGTTAtttataa
aaagaatcaaagCTCGAACGATCGAGATAAGATTGATCTGATTTTATTAT
CACTTGCTGTTTGCGATGCTTTGGTTTCAATCACTGTATATCCAGTTTAT
CCGTGGCTAAGCTTTTGGACATTTTATTTTGGATCGTTCCCAATCGCCAT
TTTTGGTTTGGTCCTGTTAAGCATGACCTCAACTTCATCTTTGACAATCA
TCATGTTAGCCGCTATCAAATATCTCAAGATTTCAAGAACAAGCACTTTT
AATGATCTAATAACAGAGAAGCGGTTATGGATCTTAATAGTGTTGTGTTG
GTTTGTACCAGCCTTCCCGATGCTTATCAATGTGATTCTAGGAAATGTAC
TCAACAATTATATTTCTTTTGCCATCACCATCACCACAATCATATCTTTA
CCAGTGCTATACCTCATGATCTTATGtgtcttcaaaaaatcaagaaaact
ggTCGCCGTAAGAGCAAACTCAACAATCCAACGAGAATTGAATGCCCAAG
TAACAGAGCGCATCTCTAAGAAGCTTGTGCGGCGCTCACTTTGGCTGATT
GGTGTCTATTTCGCATGTACATGTTTAACCATTTTCTCACACACTCTGTA
TGCTTGTGGTGTGATTGAAAGCGGTTACTTATATCAAATAACCAATCTGA
TTTTTCTTGGGAATAGTTGTGCTAATCCCTGCATTTACATGTTCAAAGAC
AAAAAATCCGTA Coding sequence (CDS) from alignment at scaffold_477:36920..37731 >TCONS_00067943 ID=TCONS_00067943|Name=TCONS_00067943|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at scaffold_477:36920..37731 (Clytia hemisphaerica)
CTACCTGTTAATTTCCGTATATTCATGACAATATGTTATGGTTTGATGAC
AATATTTGGTGGCATTGGGAATGTTGTCTCCATCATCGTTAtttataaaa
agaatcaaagCTCGAACGATCGAGATAAGATTGATCTGATTTTATTATCA
CTTGCTGTTTGCGATGCTTTGGTTTCAATCACTGTATATCCAGTTTATCC
GTGGCTAAGCTTTTGGACATTTTATTTTGGATCGTTCCCAATCGCCATTT
TTGGTTTGGTCCTGTTAAGCATGACCTCAACTTCATCTTTGACAATCATC
ATGTTAGCCGCTATCAAATATCTCAAGATTTCAAGAACAAGCACTTTTAA
TGATCTAATAACAGAGAAGCGGTTATGGATCTTAATAGTGTTGTGTTGGT
TTGTACCAGCCTTCCCGATGCTTATCAATGTGATTCTAGGAAATGTACTC
AACAATTATATTTCTTTTGCCATCACCATCACCACAATCATATCTTTACC
AGTGCTATACCTCATGATCTTATGtgtcttcaaaaaatcaagaaaactgg
TCGCCGTAAGAGCAAACTCAACAATCCAACGAGAATTGAATGCCCAAGTA
ACAGAGCGCATCTCTAAGAAGCTTGTGCGGCGCTCACTTTGGCTGATTGG
TGTCTATTTCGCATGTACATGTTTAACCATTTTCTCACACACTCTGTATG
CTTGTGGTGTGATTGAAAGCGGTTACTTATATCAAATAACCAATCTGATT
TTTCTTGGGAATAGTTGTGCTAATCCCTGCATTTACATGTTCAAAGACAA
AAAATCCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067943-exon-scaffold_477-1491911889:36920..37731 | TCONS_00067943-exon-scaffold_477-1491911889:36920..37731 | Clytia hemisphaerica | exon |
| TCONS_00067943-exon-scaffold_477-1510915933:36920..37731 | TCONS_00067943-exon-scaffold_477-1510915933:36920..37731 | Clytia hemisphaerica | exon |
| TCONS_00067943-exon-scaffold_477-1575043694:36920..37731 | TCONS_00067943-exon-scaffold_477-1575043694:36920..37731 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_477 | supercontig | scaffold_477:36920..37731 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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