TCONS_00067857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067857
Unique NameTCONS_00067857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067857 ID=TCONS_00067857|Name=TCONS_00067857|organism=Clytia hemisphaerica|type=transcript|length=623bp
AAACTTATTTTTGAGTCAGAGTATGTGAAACAGGTgaagaaaaaagatat
ttttttagcCAGAAAGTTTTGTAACACCTTCAGATTTATTGATAATCTAC
TGGCTGTTATTGATGATggggaatttgaaaaaatgttttaaaagtatTTA
TCCTCCAGAGCTCGAGCTTAAAAAAGAACATAGTGGGGACAGTGTTTACT
TTCTTGATTTAGGTATAACAATTAAGGGGAGATCTTTCCAGACTTCCTTT
TACGAGAAACGTGATTTTTCGATCGTGAGAATGCCTTTTAAACGCTTTTC
TTAAATTACGTTCTTTTAGATTatcattttttcttgaaataggTATTTGA
TGTCCATTAGGTATTGACGCTAGCTAGTAAAGTAACATTGACTTTCTTAT
ATAGTCTTACATCTTACTATAATCCTAGATATACCACACAGCAACAATGA
AACGGCAGCAACAACAGGAACAGGGAAGGAGAACAAAAGCGGAGATTTAA
ACTACCATCGCGGCAACAACGACAACATAAACTATCGCAAGAAGCCAAAC
ATGATGAATTATGCTTTCGATTTTTGTTTGCAGACTTTGAACCTAGATTT
ACAAAAACAACCAAGGAAACGGT
Run BLAST on NCBI

transcript from alignment at scaffold_476:347669..348291

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067857 ID=TCONS_00067857|Name=TCONS_00067857|organism=Clytia hemisphaerica|type=transcript|length=623bp|location=Sequence derived from alignment at scaffold_476:347669..348291 (Clytia hemisphaerica)
ACCGTTTCCTTGGTTGTTTTTGTAAATCTAGGTTCAAAGTCTGCAAACAA
AAATCGAAAGCATAATTCATCATGTTTGGCTTCTTGCGATAGTTTATGTT
GTCGTTGTTGCCGCGATGGTAGTTTAAATCTCCGCTTTTGTTCTCCTTCC
CTGTTCCTGTTGTTGCTGCCGTTTCATTGTTGCTGTGTGGTATATCTAGG
ATTATAGTAAGATGTAAGACTATATAAGAAAGTCAATGTTACTTTACTAG
CTAGCGTCAATACCTAATGGACATCAAATAcctatttcaagaaaaaatga
tAATCTAAAAGAACGTAATTTAAGAAAAGCGTTTAAAAGGCATTCTCACG
ATCGAAAAATCACGTTTCTCGTAAAAGGAAGTCTGGAAAGATCTCCCCTT
AATTGTTATACCTAAATCAAGAAAGTAAACACTGTCCCCACTATGTTCTT
TTTTAAGCTCGAGCTCTGGAGGATAAatacttttaaaacattttttcaaa
ttccccATCATCAATAACAGCCAGTAGATTATCAATAAATCTGAAGGTGT
TACAAAACTTTCTGgctaaaaaaatatcttttttcttcACCTGTTTCACA
TACTCTGACTCAAAAATAAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042382XLOC_042382Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067857-exon-scaffold_476-1491911889:347669..348291TCONS_00067857-exon-scaffold_476-1491911889:347669..348291Clytia hemisphaericaexon
TCONS_00067857-exon-scaffold_476-1510915933:347669..348291TCONS_00067857-exon-scaffold_476-1510915933:347669..348291Clytia hemisphaericaexon
TCONS_00067857-exon-scaffold_476-1575043694:347669..348291TCONS_00067857-exon-scaffold_476-1575043694:347669..348291Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:347669..348291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.428475	0.513148	1.06885	0.730069	0.274719	0.182641	0.110174	0	0.190242	0.357793	0.260462	0.838974	0.0944005	0	0.145981	0.142987	0	0.0659371	0	0.169593	0.331419	0	0.0982562	0.267988	0.092007	0	0	0.382137	0.0263163	0.290721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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