|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067799 ID=TCONS_00067799|Name=TCONS_00067799|organism=Clytia hemisphaerica|type=transcript|length=2587bpRun BLAST on NCBI protein sequence of TCONS_00067799-protein >TCONS_00067799-protein ID=TCONS_00067799-protein|Name=TCONS_00067799-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp MANKPTEALETKLNEPEEIYLRNSLSEFTQLDDLVHSNPADSGRGPHHISRun BLAST on NCBI transcript from alignment at scaffold_476:125275..151950+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067799 ID=TCONS_00067799|Name=TCONS_00067799|organism=Clytia hemisphaerica|type=transcript|length=26676bp|location=Sequence derived from alignment at scaffold_476:125275..151950+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_476:125275..151950+ >TCONS_00067799 ID=TCONS_00067799|Name=TCONS_00067799|organism=Clytia hemisphaerica|type=CDS|length=30141bp|location=Sequence derived from alignment at scaffold_476:125275..151950+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067799 vs. Swiss-Prot (Human)
Match: F227A (Protein FAM227A OS=Homo sapiens GN=FAM227A PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.410e-29 Identity = 98/352 (27.84%), Postives = 162/352 (46.02%), Query Frame = 2
Query: 671 KPLLVELHSFPGYDDIELTPLPALLTAEFMLQVVVDAQKYLKNKATF--KKSFYKFFTQPSSVTVFQDTFWWFFCHKYQHSEVCQEKLFDRIAKNYTKLLFSKSQEQNHDKYFKNYGDLLSQAVYATFCHAFPASYRQFNGEFRDEIISICALWIIGTKPPPRTWEDWNFEALEPLGMRKGERIQEDAAKTKAIDFDLKQMEEKSRLMTRRNTRRLSRAIMGGSSGTIPLKTLIEATKEKDVXXXXXXXXXXXXXXXXXXXXXXXXXXXSHVKQISSVLAMAESNKHKQSCEVGPGASFNKVVFNMNGRSPLVXXXXXXXXXXQDVGTSVLVQRTEIDKLPPPDSETYEDII 1720
K LL EL+ + ++ + LP + M+ VV A++ + F + KF + S ++ D+FWW F +YQ ++ Q LFDRIA++Y LLF + + + K LLS+AVY +FC FP S+ EF+ +I + +LWI GT P P++++ W++ L+P R+ E + TK +F L + R +++ + SS P + A + + + K+ + VK+IS E+ K+SC +FN+ G+SPL+ Y+L + LQ G +VL+ R E P + TY D+I
Sbjct: 129 KNLLAELYQYSNFNSSKPNKLPNGVDFCDMVGNVVRAERDCLSGKHFCSGRELEKFLSSSSPRAIWLDSFWWIFHERYQPNKELQNNLFDRIAQHYALLLFRVPKSHSEEALLKRLPSLLSKAVYTSFCCCFPQSWFD-THEFKSDICNTMSLWISGTYPSPQSYDSWDYSELDPERFRREELMLYRRRLTKGREFSLFAGK---RAFSQKPAQSRKFYHPQSSSANSPSEKTSSAKQNSE-----KSLRMQNTAKEHHCQTLVLKKPTQEVKRISEARE-CENMFPKKSCAACKSPELTSNLFNIYGKSPLIVYFLQNYASLQQHGKNVLIVRREKTTSTPDCTPTYTDVI 470 The following BLAST results are available for this feature:
BLAST of TCONS_00067799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.