TCONS_00067824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067824
Unique NameTCONS_00067824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1892

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067824 ID=TCONS_00067824|Name=TCONS_00067824|organism=Clytia hemisphaerica|type=transcript|length=1892bp
TAGACTGACGAGCGTGCccaagaaattgaaaagaacGTCACCGATCAAGA
GCAACGATATTTGAAATACATGTCCAACTTGGAAGAGTTGCAGTCAGTGG
AAGCAAGACAATGCTCGAACCTTGAAACACTACTCGAAGAACTGAAAAAT
AAATGTGAAGAAAAACAAGACACGGTGGAAGAAATCAGCTCAGCCTTCAT
AAAATTCAAATATGACACAGCAAAAGAATCAATCAGTACAAGAACTGGAA
AACCCATCCCAGTCAAAGATTTGGAGCAATACCAAATGGCCGAACAGAAA
AAGGAGAACGAAGTCATCGCTGTTCGTTTGGAGAATATCAAATTGAAAAA
CCGACTGAAGAAACGGGAACAACAGCTCAAAGCTAAGGAAGAACTTGCAG
AAGGTTTACACTTGATTGATTTTGaacaattgaaaattgaaaatcaaaca
tATAATGAGAAGATTGAAGAACGTAATGAGGAATTATTGAAACTTCGGAA
GAAGATAAATTCAACAGTACAAGTATTGAcgcatttaaaagaaaaactcc
aACATGTTCAGGGAGAAAACGGTGAACAACGAACAAATTTACGTGATATT
GAAGTCACTGTAGCTCATaAACGTGACCTGTTGACACGCTTGAAACAAGC
ACGTGACTCCCTTCGCTTTGATAACACCAAGTTGAAGCATAAAGCTGGTC
TCCTTGGAAACAAACCGTTGCTAAGGGATTTCGAGGAACGAAAAGATGAG
AGTGAGGAATTGAGGAACCGGCTGGCAAATTTGAGACAGAATCACATGGA
GTTGAACATTAACTTGACCACTAtcagaaagaaaattgataatgTCAAAA
CTATTGATATGCAGTAGCAataattattatcaattttttgttgtcttgag
tgttgtttcaacattcattgGTTTATTTAACGTTAAACGAACGTTGTGGA
CGTTAGATTGACGTTGTTCGGGCGTCCTCAGACACTAATTTTGAAGTTGG
acacaatgctggacaaaagAAATGTTTTATGAAACTATCCTGCAACGTCC
GAACAAAGTCGATCTAACGTCCACAACGTTCGTTTGACGTTAAATGAACG
AAAACTTTGCCTTTTATGACAGTGGGTTTGAGATCCTAGGAAGTCTCTGT
CGATAGCTAACATGCtacaattttattatttattgtcaaatttcaattca
aattGCCTTTTCGAGATTGAGTTTTGCAAGGAAAGTAATGGGGTCTGTAA
AATATCGGATATCTTAATCTACCCCTTTTTTCACTGTTcaaaccatagat
ttataaagcccgataGGCTAGATGGCGTAcctttgctgaaaagtgtgccg
tggctAGATAAGAAATCCTATCTAAGTCACGTggcattacaatagaattt
caacgcttgaccaataagaagctttgcgggttttcgaaaacattttttcc
gatattcactttttttgcctgcgatggctttaggcacgacatctagctct
tcgggctttacaaatcTATGGTTTAAACCCGTATACAACATTTATATTAT
TAAAATCAACAGGGTAACATTATCAAAAGGAAACCGCGACAGAAAAATAC
ACAAATTATAATTCATTTAACTGATAGTTCATGTGAATGCCCCCTAAAGG
TAAAACTGGGTAAAAAGCAtgaattgagatttttcatagtATTGAATAAT
TAATATCATTTCAAAAAGTGGGTTTGCAGGAAACCTAGAAACaaacttat
tttcaaaataagtttACAGTTTTTTAATTCATCCAAATGTATATTGAATA
TATTTCTTTAATTTGTCAAtaatataaaaaagtgtaaaaatagatattct
gatttttatttttaaaacttcaaaataataataatcttttCA
Run BLAST on NCBI

transcript from alignment at scaffold_476:100945..110831-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067824 ID=TCONS_00067824|Name=TCONS_00067824|organism=Clytia hemisphaerica|type=transcript|length=9887bp|location=Sequence derived from alignment at scaffold_476:100945..110831- (Clytia hemisphaerica)
TAGACTGACGAGCGTGCCCAAGAAATTGAAAAGAACGTCACCGATCAAGA
GCAACGATATTTGAAATACATGTGTAGGCAATTTTTTCTATACCTATACA
CATGTTTTTTTATATAAGAACAAACTATGAACCAGGTGTCGTAGAAAAAA
GTCCCCCACTTGGAAATGAAATTTCCTTGAGAAGTAATGTTTTAGCATTC
TGGTCATAACATTTGATTTAGTCAACCAAATTTGATAAATGACACCTCAA
AATTTAAGTTTATTCTTCTTCTTTCCCATGCAAAAAGTTTAATTCTTTAA
CGGTTCATCAAACTCGAGAAATTTAACTTCAAAGCTGTTCAAAGAGGGAG
ACTTCTTTTCTGGGACACCCGGTATAAACACAAGGCTTCAATGCGATTCC
CAAAATATTAAAGAACAAGCTAGTATTAGAGTATTAACTCCGTATTTTAA
GACTGAAGACTTAGGATCTCGAATTCAAAACTTTTGATCTAGTGGGTCTT
TTTGGATGAAATTTGGCTCACAAGATCCTTGTCGTAACTTTCTACCAAAA
AAATCTTTTTAATGACGTCACTTACCACGCCCAAAGTGAGTAAAAGCCGA
AAATAACCTTTGTTCTTATAAATGGCTATTGCTATTGCATTCTAACAAAG
GCTTTAGAAAAAGGTTGCCTGAGTCTAAAATGCTTTTTTATACTAAATAT
TGAATAATTACGGTTGAAACGATATATTTGACATAAAAAATAAATTTGTA
TGGGAAAACTTTACCGTCAGAAATGTCATCATGGTAAAGGCTGGAAAATT
TTTAGGTGTCAAAACTTTGTTTATTTTAAAGCTAAATAAAAGTTAGAAAT
TTCATGCCAAAAGCTCTATTATTTCAGAAGCTATCAACATTAGTTTCACC
CGAACAGAAACAGCCCCCAGTACGAATAGGGTTGGAACCATTGAGTTTCA
AGCCCGAAGGGCGAAACTTTAACCCTTTTCAGGCAAGAGAAATTGAAGCT
ACGTATTTCCCATCCAGAATGCGCTGTAATTATGACAACGGATTGTATCT
AGCGGTTACTTTGTTAGAGGAATACATTTTTTGAAATCTATCGATAGATT
TTAGTTTCAATCCGGTGTTTGTGTAAAAACTACGCGCGGGCGTTCTGGAT
GGGAAATAGGTGGTTTCATTTCCCATCCAGGAGTCTCGCCTCTAGCCCTT
CGGGCTTGAAACTCAGTGGTTGACACCTCTCAAGTCAAAACTCTAAAGAA
ACAAAGTGGAAGTACTGAAATAGTAATCCTCGCCCGTTTCTGAAGAACGT
TCAAATACCCAACATTGTCAGTATAAAACGACGATGATTGATTCGATACA
TTTACATTTTTTAAGCCAACTTGGAAGAGTTGCAGTCAGTGGAAGCAAGA
CAATGCTCGAACCTTGAAACACTACTCGAAGAACTGAAAAATAAATGTGA
AGAAAAACAAGACACGGTGGAAGAAATCAGGTTTTTTACAATTTATTAGT
ACAGTGAAGTCTCCATAAGCCATTACCGAGTTTATGCATGTGTGTTTTTC
CGCGACGGAGACGGTAAGGTTCTTATTTGGCGCGTCGACAGGGTTGTAAG
TTTATATTATGGGCCATATTTCTGAGGAAACGTTTAGTTAGTTCACGTTT
GAATTTGGAAAGATTTAAACTTTTTTCTGAATTGTTATACACCTTTTCGA
CCGTAGCTGCCGATTGCGACGCGGGCATTTTTTGTCTGTTATACCACCCT
GAACTCGATCCAATCCTTTTTTTTACACCTTTTTCTATTGTCTATAGGTG
CAAAAAAAAAAGACTGGGACGGTTTTAGGGCGGTAAAACGGACAAAAAAA
TGCCATCGCGAAAATTGGCGGCTACGGTCAAAAAGTGTATTGGGGGTCAT
CCCTCCCTTCTTTTTAGTGGACACATAACCGGACTAATTGAATTATTCTG
TGTTCTTCTTTAGCTCAGCCTTCATAAAATTCAAATATGACACAGCAAAA
GAATCAATCAGTACAAGAACTGGAAAACCCATCCCAGTCAAAGTTAGTTG
GCACTGTTTTTTTGTTTTTTTTTGCAGTTTTTCTGTTTTTCTGTTTTTAT
TTCTTCAGCTGTAAGGATCGAATCAGATGTTCAAAGCATCCTCAAAAGCC
TTAGCTTTGGCTTGATAACTAAGATATAACATTTTTTTATAAGAAAAGTG
TTTTTTTTTGGAAAACACTAGAAAAGGAATCCTCGATAACTACATAATGT
TGTTTTGATTGTGAGAGAAAATACTAGAATCTGATTGGATGCGATAAAAC
GAGCAACAACGGAAGAGTAGTTTGCAATCAGGCGTTTGTATAAATAGAGT
GAAAACTTGTTGTGCGGTAGTTATACATAACGCCTGACACTCTAGCTAGA
GAAAATCCAGAATCCATACTGTTGAACATTTCCTGGTGCATGTATATTGA
ATCCTACTTTTTCAGGATTTGGAGCAATACCAAATGGCCGAACAGAAAAA
GGAGAACGAAGTCATCGCTGTAAGAATTAAGTTTTTATTTCGTTTATTAA
AGGTTTAATTTTTTAATAAGAGTGGTATCGTTTGCTTACTCATCAATTTT
AATTTACAAGCTTTTTCACATTGAATTGACACGGATGTGAAGCAAGATTG
GTCAGGAAGAGGAAGGAGGCGATCCAAAAAATATCTGCAATCTGATTGGT
TAAAAAGAGTACAATATAGCTTGTATTTTACATGTACAAAATATAAATTG
ACAAAAAGATGTTGTTGCATTGTAGCGGTAGAATCAATCTAACTTTAATT
TGCTACAAAAGTGCCCTGCGCTTTTTTCCAACACAAAAAGTATTTTTTGG
GTCACCGATAAACCAGTTATCAGACATTTGCTTGTACAAAATGGAAATAT
TTCAGTCGTTCCGGATTTTCCGTATATTTTCCTCGCCTAAAATATTGCAC
GGAAAAATCTCGGAACTCGTTAAATATTTCTCATACTGTACTCACAACTT
TCCGATAACTATTACATATCAACACAATATAACAATAGGCAGACACTGTC
CTGATATGAAACATGTGTCTGATTTGAAATGGGAACACTTATGCAAAAAT
AAAACTTTTAACAAAGTATTTTTTTCATATTTTTTAGAACTTTGAAAGTT
TTCATGTGAACAATCGTTTACTACATACAAAATGATTTAATTTGTTGAAA
ACAAAATTCAAATTTGTAACTCTTTTGCTTTGCTGCTATCTTTGTAATAC
TTGTATCCCAATTTGCAAAATACATTTTAAAATACGTTTTTTTTTTAAAG
CAAGTGTATCTAGGCATAGTTCATGCTTATTATATGCTTATGATTCACCC
CCGAGCCAAGTTTTTAATGAAATTTCAGAAATTTTGTAAGAATTTGTTCA
GATTTTGGGAGCAGTGGAATGTAGCTAGCCGTGGAATGTCTTATTTTTTA
CTTGACCTCTACCAAACCTTTTTTAAACAGATAAAAATGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTAGGCTGACATATATGCTCATGTTATGCTTAGG
AATTCTGCAAATCTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAA
AAAAAACATGTAGTACTTAACCATTAAAAAGTTGATTACTGCAGTGACTT
AGAAAAATATCATATACTAAAAACAAAAATTTCATTGAAATAGGCAGGGA
TTTTTCTAAGCCCTTTGAGCTGGGGGCCGTTTTTGTAAACTTAGATCGAA
TTTCTAATATGCCTGAAAGGGAACTTGCTCAGTAAAGCTGTGCATTGATA
AAACTGGGGGTCTTGTGGGTGTTCAGAGGGCGAAGCTAAAAAAACTCTTG
AATATAATATGTAGATAATAATTATTTTTTTTTGGTCATAAACAACAAAA
AAGGTTAGTTTCGCTAGAAAAAATCTCATTTATTTCGGATTGGGTTTCAA
AAACTCAAAAATTGATTGAGTATTGAAGTATTGAAGATTGAGTATTTTGG
GGCGGTATACGGACATAAAGAAAGTGCTTAGAAAAATCCCTATTACCCTC
GTAATAATATAGTTCACTTAAAATTTGTTGTTACAAGGTTCGTTTGGAGA
ATATCAAATTGAAAAACCGACTGAAGAAACGGGAACAACAGCTCAAAGCT
AAGGTAACGAAAGTTTCATAAAAAACATTACTCTAGTGTGTCCTTTGTAT
TTCTACGAGTCCTTTTGATTTGTCAGGCCGTCAGGCGAAATGGGGTTTCA
ATCAATGGGTTTATGCAAATTACTGTTTTCCTAAATATCTCTGATTGCTT
ATAAAGATTCGGCTAAGTCTGTTAGCAAATAAAAATGGCACAGATGACCC
ATAGCTTAGAATTTGAATAGCGACACCCAATTATACCACCTTATCAGATG
ACGCAAAAGTTTGGCTGGTCAAAAGATCTTAACCATCATAAACAGAGTAC
TGTTGCTTATTTAAACTTTTTATATTCGAATCCCTCGGGGAAACTCCCGT
AAAACGATTTCTATGATTCGAGTCTGTCTATAATTCGAACAAATTAGACT
TCCCGTTCGTGTTCATATTAGCAAGAGTCAATTATACTGTTTTAGGGCAC
AAAAATACCCTCAGAACCCAGAAGAAAATTTTGAGTATAATTCTCAACCA
TACGACTATTGTCCAAAGCAAAATAGAAACTCTCAGAATAAATAAGTATT
ACTGAATTCAGCGGTAAAGGTAGGTAGTATTTTGTAGTCCCCTTAAAAAA
TTATTAGTGACATTGTTTTTTTATATACTATATTACTCTTATGAATATAC
TTCCAGGAAGAACTTGCAGAAGGTTTACACTTGATTGATTTTGAACAATT
GAAAATTGAAAATCAAACATATAATGAGAAGATTGAAGAACGTAATGAGG
TAATACGAACTATCGACCTTTAGACCATGTTCAGACGTTACGGTTTTGTA
TCGCACCGGCATAGTTTTCGTTACGGATTTAACACAGTGTTTCGTAACTT
TTCGTTTTGGAGAGATACGAAACCGTGACGTTCGAACATGGTCTAAAAGC
GTGACGAGGCTGGGTTCGAGTTTACCAGGTGAAGGAATGACCTCAAAATG
CCTGAAGTCATTGCATTGATATTCTCACAGTCAAATATTCACTGTTTCAG
TGGCTTCCAGGCTATATTCTCAGTCTTATTCTAACATTTTTTAGCGTTCC
TGAGATCCTAAGATAATCTAAAGTCTCATGTTAAGACTCAGAGTAAAACA
TTAAAAAATCACTGACGGTTTTGAGGTTACTCCCCGTAAGTGCCAAATAT
TATGGCGGTGATTGTAGCCCTGGTACCGAAATCCCCTTTTCTCAATCTGA
TCTTTCCGATTTTCTGATAGGGAAGGCTTCAGCAACGGGTTTGATCGTCA
GTGAGACATACAGTGGGACAGATTTTTGTTCTCGTTTTCTGATAGGTTTA
GAAATTTCGAAATTATTATTGTGTCACTTCATAACGCTATGAGAGAGAAG
GGATGTGAAGGTGTAATCTGGATTTTTTGCCAACGCAGTACACGTTTTTT
TTTCTTCATAAGAACAAACTTTATGGCCAAAATGTTAAGAACAGGTTAAG
AACATTTCAAGACTTTGTGGACTAATTTCATCGGAAAATGGACAAAAATA
CTCAAAAAACGGCAAAGATAAGAACATATTAAAAACATTTTTAGGCTTGA
AACTCAAAAAGGCTTCAAAAATTTAGGATGTTCTTATAAACGTGCATCAA
GTCCAGTGTTTTTTACTGGTTACGAGTTTAAAAGATTCAACTGACACTTG
ACTGTTATTTTGACCCGCTATTGCCCTGTCCCCTTTGTGGTTTTTGAGTT
GACAGGAATTCATATTTCTTTGTTAGGAATTATTGAAACTTCGGAAGAAG
ATAAATTCAACAGTACAAGTATTGACGCATTTAAAAGAAAAACTCCAACA
TGTTCAGGTTAGAATTGCGCTAGCCTCATTCCTATACGATTATTAAAATC
ATGGTCGAAATATATTGAGAATTGTGTATTTGTGTATTTCAACTTTTCAA
GTGGCTTATTCTTAGCCTTATTGGAACATTCTTTGAGCTTTTTGATCTTG
TAAATCTTAAGTCTCATGTTAGAATTCAGAGTTAAAGCTCTTACTTTCCA
ACCGTACTACACATAAAAATCATTTCCGGTTTTAAAATTTTTTTTTGACT
TAATTCCCCTCATGTGAAAATATGTCTGTTTATGTTTTATATCCAGGGAG
AAAACGGTGAACAACGAACAAATTTACGTGATATTGAAGTCACTGTAGCT
CATGTAAGTACGAAAGTCTTTCTGTCTGTCTCTCTATCTATTTCTCTGAC
CATGTTTTTCACAGCTTCAAAAATTTTAAGGTCTTCGACCGCTAAATCGT
AAAAATATGTAAAATCAGATCTGCGTCCGCTAACAGAAAAAAAATATTTG
TGCGGGCCCCCTTGAAACAGATAGGCATACAAATCCACTCCCAATTTACT
CTGTCTAATGAGATCTCTGGCTCGTGAGCTGGGCAGTAGAGAAGGGAGTA
TGACAAAGTAAGTAATTTTGAGACCGCAGTCGAGGGCAACCCGAAGGCTC
CCCTTCCTTTAACTGTCTACCCAAAGGTAGGGGAGGGCGCCACATGAGCA
CTTTTGGAAGTCATAGGTATTACTCGAGTTTGGAGTTCGTACCCACAACC
TTGCGCACCGTAGCTAGATGCTACCTTCGTGCTATGGCCGCTTAGGAAAA
AGCATAGCAAAAAGCAGGTAATTGAATAATGGATCCCTGGTTTGTGACCT
TCCTCGAACGTTTTAGACCATTTTTAGACGTTAGTGTTTCTTATCGCTTC
AGCATGATATTTGTTGTGAATAGGAACAGTTCCTACTGATTTTGGAACGT
TTCGGAGCAAGAAAACGGAACAGTTCCGTTCCTATGAAAATAGTGGAGCG
AAACCGTTTCGATCCATTTTGCTTTGTGACGTCTCGAATTTTGACGCTCA
CACAGTGTTTCGGAACCGTTTTGTTTCGCAGCGATACAAAACCGTAACTG
AATATTGCCTTAATCAATTTTCATTTTCTTTTTTCCAGAAACGTGACCTG
TTGACACGCTTGAAACAAGCACGTGACTCCCTTCGCTTTGATAACACCAA
GTTGAAGCATAAAGCTGGTCTCCTTGGAAACAAACCGTTGCTAAGGGATT
TCGAGGAACGAAAAGATGAGGTATGCCCACGTTTTTAAAGTTTTTTCAAC
AATCACACTTTAACCTTTTTTAATTTATACAGTTGGAGTCTCTATAATTC
GTACGCATAGGAGGAACCCAACATTTGTTCGAGTTAAGGAAATTTTGAGT
TATGGAGTAAGGTTTACGATGAATTTGAAGGGACCAGAAAACTTACTTAT
TACTTATTTGAGATACAAATATGATGGTCCTATGGTTATTATTCAATTCG
TACTTACCTGGGACCAAATCTTCGTACGGGCTTTTGATTTGTTGGTGTGT
ACGCCTATCAACCCTTAGGGACGCGATCGGCTTCTTATTAGGGGACTATG
AATTTACAAGGAACAATTGTTCTCAGGCATTTTTAGGCTTACAACTAAAT
CAAAGCAAGCAAATTCCCGCCAAAGCTCTAGAGGCATTTTTCCAAGTCTC
TGCGGTAGAGTGAAATCTATTTTTAGCACTTGGATAACTTGAACTATATT
GACGTTACTTTTTCACTGGGTATCTTAGATTTTTCTTAACCCTTAGACTA
CGAGGGACGCGTATATGCGTCCAAAACAAGCCAAAATACTCATAGCTGCT
GACCACCTGATTTAAAGGGGTATAAACCGAATGCTTTTAGAAAGAATATA
AAAATAGCTTTCCAATGGTACCAAAACCATCTACAAAATCAAAAGTTACA
ACCTTTTATGGCACTCTAAAGTTTCGAGTTTCAAAACGAAAGTTTAAAAA
AATTTCAACTTTTTCAAAAAAAACAGCGCGCACAAAGGGTTAAGAGCGCT
ACACTTGTGTTTACGATACCTTCATCGAGAAGAATTTTCCTTGCACTTTC
GTTAGCAGTTTCTTCAAAAGCAGTAAGGGTTCATAGGTGTAGTGAATAGC
TTGTTATCACTTTCTTTTTCAGAGTGAGGAATTGAGGAACCGGCTGGCAA
ATTTGAGACAGAATCACATGGAGTTGAACATTAACTTGACCACTATCAGA
AAGAAAATTGATAATGTCAAAACTATTGATATGCAGTAGCAATAATTATT
ATCAATTTTTTGTTGTCTTGAGTGTTGTTTCAACATTCATTGGTTTATTT
AACGTTAAACGAACGTTGTGGACGTTAGATTGACGTTGTTCGGGCGTCCT
CAGACACTAATTTTGAAGTTGGACACAATGCTGGACAAAAGGTTTGTAGA
CTTCTGCAATATTTGCAAAATACTTCAATATCGATCAAAAACAAGTCCCC
AAGAGGCTCTGGGTGCTTTCCAAACCTATTCAAAGTCATTCAAAGTCACC
CGCTGCAGTCTAACCGCAAGGGCAAACCACAAGGGCTTGACTAACTGGCT
TACACCAGTATCAAAACGCTGATTTTTTGCTTGTGGTTCCCTCAAAAGCA
ATTCAAAAGCAATGCAACGACTTCAAAAGTGTTTTTCTTAACTTCCATCC
CCTTTCAGACACAATGAAGAGTCATTTTGCTCTATTTCTCATCATTTTTT
ACTGAAATTCCATTTGTCTACAACCTTTTGTCCGGCATTGCATCATATCT
TTTCTTGTTGACAGAAATGTTTTATGAAACTATCCTGCAACGTCCGAACA
AAGTCGATCTAACGTCCACAACGTTCGTTTGACGTTAAATGAACGAAAAC
TTTGCCTTTTATGACAGTGGGTTTGAGATCCTAGGAAGTCTCTGTCGATA
GCTAACATGCTACAATTTTATTATTTATTGTCAAATTTCAATTCAAATTG
CCTTTTCGAGATTGAGTTTTGCAAGGAAAGTAATGGGGTCTGTAAAATAT
CGGATATCTTAATCTACCCCTTTTTTCACTGTTCAAACCATAGATTTATA
AAGCCCGATAGGCTAGATGGCGTACCTTTGCTGAAAAGTGTGCCGTGGCT
AGATAAGAAATCCTATCTAAGTCACGTGGCATTACAATAGAATTTCAACG
CTTGACCAATAAGAAGCTTTGCGGGTTTTCGAAAACATTTTTTCCGATAT
TCACTTTTTTTGCCTGCGATGGCTTTAGGCACGACATCTAGCTCTTCGGG
CTTTACAAATCTATGGTTTAAACCCGTATACAACATTTATATTATTAAAA
TCAACAGGGTAACATTATCAAAAGGAAACCGCGACAGAAAAATACACAAA
TTATAATTCATTTAACTGATAGTTCATGTGAATGCCCCCTAAAGGTAAAA
CTGGGTAAAAAGCATGAATTGAGATTTTTCATAGTATTGAATAATTAATA
TCATTTCAAAAAGTGGGTTTGCAGGAAACCTAGAAACAAACTTATTTTCA
AAATAAGTTTACAGTTTTTTAATTCATCCAAATGTATATTGAATATATTT
CTTTAATTTGTCAATAATATAAAAAAGTGTAAAAATAGATATTCTGATTT
TTATTTTTAAAACTTCAAAATAATAATAATCTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042358XLOC_042358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067824-exon-scaffold_476-1575043694:110759..110831TCONS_00067824-exon-scaffold_476-1575043694:110759..110831Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:109352..109466TCONS_00067824-exon-scaffold_476-1575043694:109352..109466Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:108790..108868TCONS_00067824-exon-scaffold_476-1575043694:108790..108868Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:108313..108366TCONS_00067824-exon-scaffold_476-1575043694:108313..108366Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:106429..106494TCONS_00067824-exon-scaffold_476-1575043694:106429..106494Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:105683..105775TCONS_00067824-exon-scaffold_476-1575043694:105683..105775Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:104625..104705TCONS_00067824-exon-scaffold_476-1575043694:104625..104705Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:104279..104335TCONS_00067824-exon-scaffold_476-1575043694:104279..104335Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:103362..103493TCONS_00067824-exon-scaffold_476-1575043694:103362..103493Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:102191..102459TCONS_00067824-exon-scaffold_476-1575043694:102191..102459Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1575043694:100945..101817TCONS_00067824-exon-scaffold_476-1575043694:100945..101817Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:110759..110831TCONS_00067824-exon-scaffold_476-1510915933:110759..110831Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:109352..109466TCONS_00067824-exon-scaffold_476-1510915933:109352..109466Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:108790..108868TCONS_00067824-exon-scaffold_476-1510915933:108790..108868Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:108313..108366TCONS_00067824-exon-scaffold_476-1510915933:108313..108366Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:106429..106494TCONS_00067824-exon-scaffold_476-1510915933:106429..106494Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:105683..105775TCONS_00067824-exon-scaffold_476-1510915933:105683..105775Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:104625..104705TCONS_00067824-exon-scaffold_476-1510915933:104625..104705Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:104279..104335TCONS_00067824-exon-scaffold_476-1510915933:104279..104335Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:103362..103493TCONS_00067824-exon-scaffold_476-1510915933:103362..103493Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:102191..102459TCONS_00067824-exon-scaffold_476-1510915933:102191..102459Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1510915933:100945..101817TCONS_00067824-exon-scaffold_476-1510915933:100945..101817Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:110759..110831TCONS_00067824-exon-scaffold_476-1491911889:110759..110831Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:109352..109466TCONS_00067824-exon-scaffold_476-1491911889:109352..109466Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:108790..108868TCONS_00067824-exon-scaffold_476-1491911889:108790..108868Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:108313..108366TCONS_00067824-exon-scaffold_476-1491911889:108313..108366Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:106429..106494TCONS_00067824-exon-scaffold_476-1491911889:106429..106494Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:105683..105775TCONS_00067824-exon-scaffold_476-1491911889:105683..105775Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:104625..104705TCONS_00067824-exon-scaffold_476-1491911889:104625..104705Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:104279..104335TCONS_00067824-exon-scaffold_476-1491911889:104279..104335Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:103362..103493TCONS_00067824-exon-scaffold_476-1491911889:103362..103493Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:102191..102459TCONS_00067824-exon-scaffold_476-1491911889:102191..102459Clytia hemisphaericaexon
TCONS_00067824-exon-scaffold_476-1491911889:100945..101817TCONS_00067824-exon-scaffold_476-1491911889:100945..101817Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:100945..110831 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.52297	1.36342	0	0	5.27356	3.73099	0	0	0.0732304	0.879595	0	1.51865	0	0	0	0	0	0	0	0	0	0	0	0	4.99925e-07	2.57984	0	0	0	0
Blast
[Close]
BLAST of TCONS_00067824 vs. Swiss-Prot (Human)
Match: CCD96 (Coiled-coil domain-containing protein 96 OS=Homo sapiens GN=CCDC96 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.536e-43
Identity = 123/282 (43.62%), Postives = 178/282 (63.12%), Query Frame = 1 
Query:   28 EKNVTDQEQRYLKYMSNLEELQSVEARQCSNXXXXXXXXXXXXXXXQDTVEEISSAFIKFK------YDTAKESISTRTGKPIPVKDLEQYQMAEQKKENEVIAVRLENIKLKNRLKKREQQLKAKEELAEGLHLIDFEQLKIENQTYXXXXXXXXXXXXXXXXXXXSTVQVLTHLKEKLQHVQGENGEQRTNLRDIEVTVAHKRDLLTRLKQARDSLRFDNTKLKHKAGLLGNKPLLRDFEERKDESEELRNRLANLRQNHMELNINLTTIRKKIDNVKTI 855
            E    ++EQ YL+++  LEEL+    +Q  +L+   +EL     + Q+ +  +   + +F+         A  S   R G+   ++++EQ Q  E KKE E+ AVRLENI+LK  L   E +++ +E+L +GL LIDFEQLKIENQT+NEKIEERNEELLKLR K+ ++VQV+TH+KEKL  +  EN  ++T L +IE   A  RD+LT+ KQAR+ LR DN +L  K GLLG   LLRD EE+ D++E L  RL +L+++H  L ++   +R+KI   K  
Sbjct:  274 EAEAPEKEQAYLRHLGMLEELKK---QQADDLQWYHQELGQLKRQCQEKLTRVEKEWRRFQALKKQVVMQAMGSCRMRGGRQAALREVEQIQALEDKKEKEMSAVRLENIQLKQSLVHFETRMRTQEDLTQGLLLIDFEQLKIENQTFNEKIEERNEELLKLRSKVTNSVQVITHVKEKLHFMDMENACKKTQLAEIEAQAALGRDILTKTKQAREGLRTDNIRLNQKCGLLGKDSLLRDLEEKVDKTELLHRRLESLKRHHASLTLSCRGVRQKIREAKAF 552
The following BLAST results are available for this feature:
BLAST of TCONS_00067824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCD961.536e-4343.62Coiled-coil domain-containing protein 96 OS=Homo s... [more]
back to top