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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067602 ID=TCONS_00067602|Name=TCONS_00067602|organism=Clytia hemisphaerica|type=transcript|length=1661bp
TTAGCAACAATAAGAGagtggcaaacgcccggtgCTTCCCTATAAAACAT
CacttcatgaatatcatgaaggGGTTATATATTAAACATTTAGAGtcata
aaagaaagaaaatgaagatcagTACAACAACCAAACGAAAAtggatattt
tcaattttactcTTCTTCATTGGTGCACCCATGATGCTGATTGGCTTTTT
CACTGACCATCTTCCAGTTGCTTATGCAGGCTGTGTCTTCAATTTCCTCT
CAATAGTGGTCTTCCTCTGTGCAGAAGTATTCACATTGGCATTCAGAAGT
TTGAAGGAATGCTGTCAAGAGAAGCAACAAGAAAGAGATCAATCAATAAC
AAACACGATCAGAAGAATTCAAAATCCAACAAAcataaatcaaagtcaat
ctcaAGCCGTCGAAAACCAATCTTATCAAtcagaaaacattttcaatttt
gctgaatcagcattACCACATCTCATGTTGCCTAGCTACGAGATGCTTAG
TGCGTTACCACCTAGCTATGATGACGTCATACAAATGAGTGAGCCAGATA
TCTGGAGATCTGCATCAGAAAGCCAAGaaagAGAAGGATTTCCACCACCA
CCGTGTTATGAAGATATTTGAAAGGTGAAACGATTTAGTGGATCGTAGAA
GAACATTGCATTGAGATAAATTCTTCGTGATCTGTCAGTATTGGAGTAGA
TAGTGGTTTGGAGTAAAACCTTTTGGAGCGGATTATGAATTGGAGTAAAA
CCTTCTTCACCGGTACTTCATGCTCAGCTTACCAAAATAATCACTTATTG
TCCTATGTGAAAGTCCGAATCCGTCACCCATCCGTCACATAAGAACGGAT
CATACGAAACGGAAGTACATTTACACTAATTTCTGGTATGGCCTAAGTAA
CGTACAAACAAATGatggaaaaaagtttaaaacttCCTCCAGAAGTGAAA
ACTTATTCGGCATATAATAAGTATAATAAATTTTGTGGCTAGCCCTAGCT
CTGAATTCATTGTTAAGAAGACGAGTGTATAGAAACGATTAAAATGAATG
GATAGAGAGAACCTGAGTATTGATCTCAGAACCTCTCGTTGAAAAATAAC
GAGCGCTCTTTCCATTGAGCTAGTTCCCTTTGGTGAAAAAGATGCAGTTA
ATGAGTTGAAAGATGCGATTTAGAAAGTGACCCAGGGGGAGGGGTGTAtt
aggtttgcgagatgacggtTCCCGATCCAaaattattgaatcggccctta
gagagactgaaattcgacgtttttgccacccttaAAGAAACTATTTCCCA
AAGATTTcagtcaaaattttcaaattgtagtccaaatttcaaaaatttat
gaccctttgagggagttaattttttattttcgtaatttCGGAACTCTTAT
AGAGACTCAATTGGTTTTGGTGTTTATACCCCTTTTGagagtgtgaaaaa
gggacctttaTGGCTTGCGCacacccagcacccattttgtCTAAATACCC
TCTACCCGGGACAGTGGCATACTATATTGTTGATACGAATTCCAATCCTT
AATGACACATTATAACTAGACTGGTGAAGAGTTAACATGAGatgtattca
acttttttttcaatcaaaaagatACGAAATAAATGGAGAATCAAATCTTA
ATCCAATGAAG Run BLAST on NCBI protein sequence of TCONS_00067602-protein >TCONS_00067602-protein ID=TCONS_00067602-protein|Name=TCONS_00067602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MKISTTTKRKWIFSILLFFIGAPMMLIGFFTDHLPVAYAGCVFNFLSIVV
FLCAEVFTLAFRSLKECCQEKQQERDQSITNTIRRIQNPTNINQSQSQAV
ENQSYQSENIFNFAESALPHLMLPSYEMLSALPPSYDDVIQMSEPDIWRS
ASESQEREGFPPPPCYEDI Run BLAST on NCBI transcript from alignment at scaffold_471:174142..176903- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067602 ID=TCONS_00067602|Name=TCONS_00067602|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at scaffold_471:174142..176903- (Clytia hemisphaerica)
TTAGCAACAATAAGAGAGTGGCAAACGCCCGGTGCTTCCCTATAAAACAT
CACTTCATGAATATCATGAAGGGGTTATATATTAAACATTTAGAGTCATA
AAAGAAAGAAAATGAAGATCAGTACAACAACCAAACGAAAATGGATATTT
TCAATTTTACTCTTCTTCATTGGTGCACCCATGATGCTGATTGGCTTTTT
CACTGACCATCTTCCAGTTGCTTATGCAGGCTGTGTCTTCAATTTCCTCT
CAATAGTGGTCTTCCTCTGTGCAGAAGTATTCACATTGGCATTCAGAAGT
TTGAAGGTTTGTACCTTTTTTGGAATCTTATATAGCGATGTACAGTAGCA
ACCGGGGGATGAATTCAAGCAGTCCGGTGTCACTAAACTTCAGCCTCCCC
CAATAATATAATGCTTGCTACGGCACTATAGTGCAAAAAGTTTGTCACTT
CTAATTCATAACTTCATTTTCGACAGTTTTGGAGCAAATCTTAGAGCTCG
CAGTCAAATCGTGAAAGACTTGAGGTTTTCTCAAAATTAAGAAATATTCA
ATCTAGTCTGAATCGCAGACCTCTAAAAAACCCAGGTAGTATAGTAGTAT
AAGGAGCACGAATTCGTTAGTGGATGCCAGCAGCCTATATTCAATCCTAA
ACAAAGGTATCATCTAGAACTGTAAATTTTATTGAATTTGCTACTAGGAA
TGCTGTCAAGAGAAGCAACAAGAAAGAGATCAATCAATAACAAACACGAT
CAGAAGAATTCAAAATCCAACAAACATAAATCAAAGTCAATCTCAAGCCG
TCGAAAACCAATCTTATCAATCAGAAAACATTTTCAATTTTGCTGAATCA
GCATTACCACATCTCATGTTGCCTAGCTACGAGATGCTTAGTGCGTTACC
ACCTAGCTATGATGACGTCATACAAATGAGTGAGCCAGATATCTGGAGAT
CTGCATCAGAAAGCCAAGGTATGTAACGAAAGTTAATTTTGGTGATTTGA
TTGAAAATTGTATCTGACGTTAGTAAAAACTGAATTATCCCCCCCCCACA
TAAGCTTCATTTTTTATGAGCTATCATAAACTGGTTAAGGCTTAATCTCG
AAAAAATGGTCGAATAGTTGGAATTATTTCGAATCGGGGAACCACTTCAT
TAGGCGAATTTTTTTCGAAAAAACGTGTTTCGCGTGTATTAAATTCGCGA
TTGCCGACTTCTGGAAAATTTTCGCGTGTATTAAATTTCGCGATTCACTA
AACTAGGTATTTTCAGAAAGTGGGAATATAAAGCAAGAAAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTTTGTA
TAAACTACTTTAGGTAGGCGTACAAACTTTCGTATTAAATTTTATCCTTG
TTTTCATCAAAGAGAAGAATTTAAGTAAATTTTCTTAGCAGATTTTTTTC
GCGAGCATCAAAAATTTTCAAAGACATTTACTTTCGCGAAAAGGGCTAAA
ATTTGCGAAAATTGCGAATGTTTCAGCTCGCGAAAGTTTGTACGCCTAAA
ACATTTCCTACTTTTTCCTTAAATTTATTCGTCCAGTGTGCTAGACTATC
AGTTTAGTTTTTACATTTTCATTTTCAGAAAGAGAAGGATTTCCACCACC
ACCGTGTTATGAAGATATTTGAAAGGTGAAACGATTTAGTGGATCGTAGA
AGAACATTGCATTGAGATAAATTCTTCGTGATCTGTCAGTATTGGAGTAG
ATAGTGGTTTGGAGTAAAACCTTTTGGAGCGGATTATGAATTGGAGTAAA
ACCTTCTTCACCGGTACTTCATGCTCAGCTTACCAAAATAATCACTTATT
GTCCTATGTGAAAGTCCGAATCCGTCACCCATCCGTCACATAAGAACGGA
TCATACGAAACGGAAGTACATTTACACTAATTTCTGGTATGGCCTAAGTA
ACGTACAAACAAATGATGGAAAAAAGTTTAAAACTTCCTCCAGAAGTGAA
AACTTATTCGGCATATAATAAGTATAATAAATTTTGTGGCTAGCCCTAGC
TCTGAATTCATTGTTAAGAAGACGAGTGTATAGAAACGATTAAAATGAAT
GGATAGAGAGAACCTGAGTATTGATCTCAGAACCTCTCGTTGAAAAATAA
CGAGCGCTCTTTCCATTGAGCTAGTTCCCTTTGGTGAAAAAGATGCAGTT
AATGAGTTGAAAGATGCGATTTAGAAAGTGACCCAGGGGGAGGGGTGTAT
TAGGTTTGCGAGATGACGGTTCCCGATCCAAAATTATTGAATCGGCCCTT
AGAGAGACTGAAATTCGACGTTTTTGCCACCCTTAAAGAAACTATTTCCC
AAAGATTTCAGTCAAAATTTTCAAATTGTAGTCCAAATTTCAAAAATTTA
TGACCCTTTGAGGGAGTTAATTTTTTATTTTCGTAATTTCGGAACTCTTA
TAGAGACTCAATTGGTTTTGGTGTTTATACCCCTTTTGAGAGTGTGAAAA
AGGGACCTTTATGGCTTGCGCACACCCAGCACCCATTTTGTCTAAATACC
CTCTACCCGGGACAGTGGCATACTATATTGTTGATACGAATTCCAATCCT
TAATGACACATTATAACTAGACTGGTGAAGAGTTAACATGAGATGTATTC
AACTTTTTTTTCAATCAAAAAGATACGAAATAAATGGAGAATCAAATCTT
AATCCAATGAAG Coding sequence (CDS) from alignment at scaffold_471:174142..176903- >TCONS_00067602 ID=TCONS_00067602|Name=TCONS_00067602|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_471:174142..176903- (Clytia hemisphaerica)
AAAGAGAAGGATTTCCACCACCACCGTGTTATGAAGATATTTGAGAATGC
TGTCAAGAGAAGCAACAAGAAAGAGATCAATCAATAACAAACACGATCAG
AAGAATTCAAAATCCAACAAACATAAATCAAAGTCAATCTCAAGCCGTCG
AAAACCAATCTTATCAATCAGAAAACATTTTCAATTTTGCTGAATCAGCA
TTACCACATCTCATGTTGCCTAGCTACGAGATGCTTAGTGCGTTACCACC
TAGCTATGATGACGTCATACAAATGAGTGAGCCAGATATCTGGAGATCTG
CATCAGAAAGCCAAGATGAAGATCAGTACAACAACCAAACGAAAATGGAT
ATTTTCAATTTTACTCTTCTTCATTGGTGCACCCATGATGCTGATTGGCT
TTTTCACTGACCATCTTCCAGTTGCTTATGCAGGCTGTGTCTTCAATTTC
CTCTCAATAGTGGTCTTCCTCTGTGCAGAAGTATTCACATTGGCATTCAG
AAGTTTGAAGAAAGAGAAGGATTTCCACCACCACCGTGTTATGAAGATAT
TTGAGAATGCTGTCAAGAGAAGCAACAAGAAAGAGATCAATCAATAACAA
ACACGATCAGAAGAATTCAAAATCCAACAAACATAAATCAAAGTCAATCT
CAAGCCGTCGAAAACCAATCTTATCAATCAGAAAACATTTTCAATTTTGC
TGAATCAGCATTACCACATCTCATGTTGCCTAGCTACGAGATGCTTAGTG
CGTTACCACCTAGCTATGATGACGTCATACAAATGAGTGAGCCAGATATC
TGGAGATCTGCATCAGAAAGCCAAGATGAAGATCAGTACAACAACCAAAC
GAAAATGGATATTTTCAATTTTACTCTTCTTCATTGGTGCACCCATGATG
CTGATTGGCTTTTTCACTGACCATCTTCCAGTTGCTTATGCAGGCTGTGT
CTTCAATTTCCTCTCAATAGTGGTCTTCCTCTGTGCAGAAGTATTCACAT
TGGCATTCAGAAGTTTGAAGAAAGAGAAGGATTTCCACCACCACCGTGTT
ATGAAGATATTTGAGAATGCTGTCAAGAGAAGCAACAAGAAAGAGATCAA
TCAATAACAAACACGATCAGAAGAATTCAAAATCCAACAAACATAAATCA
AAGTCAATCTCAAGCCGTCGAAAACCAATCTTATCAATCAGAAAACATTT
TCAATTTTGCTGAATCAGCATTACCACATCTCATGTTGCCTAGCTACGAG
ATGCTTAGTGCGTTACCACCTAGCTATGATGACGTCATACAAATGAGTGA
GCCAGATATCTGGAGATCTGCATCAGAAAGCCAAGATGAAGATCAGTACA
ACAACCAAACGAAAATGGATATTTTCAATTTTACTCTTCTTCATTGGTGC
ACCCATGATGCTGATTGGCTTTTTCACTGACCATCTTCCAGTTGCTTATG
CAGGCTGTGTCTTCAATTTCCTCTCAATAGTGGTCTTCCTCTGTGCAGAA
GTATTCACATTGGCATTCAGAAGTTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067602-exon-scaffold_471-1575043694:176598..176903 | TCONS_00067602-exon-scaffold_471-1575043694:176598..176903 | Clytia hemisphaerica | exon |
| TCONS_00067602-exon-scaffold_471-1575043694:175936..176206 | TCONS_00067602-exon-scaffold_471-1575043694:175936..176206 | Clytia hemisphaerica | exon |
| TCONS_00067602-exon-scaffold_471-1575043694:174142..175225 | TCONS_00067602-exon-scaffold_471-1575043694:174142..175225 | Clytia hemisphaerica | exon |
| TCONS_00067602-exon-scaffold_471-1510915933:176598..176903 | TCONS_00067602-exon-scaffold_471-1510915933:176598..176903 | Clytia hemisphaerica | exon |
| TCONS_00067602-exon-scaffold_471-1510915933:175936..176206 | TCONS_00067602-exon-scaffold_471-1510915933:175936..176206 | Clytia hemisphaerica | exon |
| TCONS_00067602-exon-scaffold_471-1510915933:174142..175225 | TCONS_00067602-exon-scaffold_471-1510915933:174142..175225 | Clytia hemisphaerica | exon |
| TCONS_00067602-exon-scaffold_471-1491911889:176598..176903 | TCONS_00067602-exon-scaffold_471-1491911889:176598..176903 | Clytia hemisphaerica | exon |
| TCONS_00067602-exon-scaffold_471-1491911889:175936..176206 | TCONS_00067602-exon-scaffold_471-1491911889:175936..176206 | Clytia hemisphaerica | exon |
| TCONS_00067602-exon-scaffold_471-1491911889:174142..175225 | TCONS_00067602-exon-scaffold_471-1491911889:174142..175225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:174142..176903 - |
Blast
The following BLAST results are available for this feature:
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