TCONS_00067515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067515
Unique NameTCONS_00067515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067515 ID=TCONS_00067515|Name=TCONS_00067515|organism=Clytia hemisphaerica|type=transcript|length=326bp
NGGAGATGGTGTTGGATATGGAGGTGAGCTTGGTTGCGATGGAGCGTTTC
GGTTGCAGGCATTACAATTGTTGCGTTGTTGTTGAATATCTTTGGTGATA
TCTGGCCAGAATACTGATGACTTAGCACGGGATAGCATCATGCCAGTGCT
TTGGTGGGCTGCATGAAGGGAATCCAGGATCTGGGCCCTAAGTGACGGTG
GGATGATAATCCTGTGGTTGTATAACACGACACCATCAACGTAATGGAGA
TCACTTCTGTATTGATGGTATTGTTGGATGTCTGGTGGAAGGTCCTCTTT
CTTGTTTGGGAATCCATCTTCCAGTG
Run BLAST on NCBI

protein sequence of TCONS_00067515-protein

>TCONS_00067515-protein ID=TCONS_00067515-protein|Name=TCONS_00067515-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
LEDGFPNKKEDLPPDIQQYHQYRSDLHYVDGVVLYNHRIIIPPSLRAQIL
DSLHAAHQSTGMMLSRAKSSVFWPDITKDIQQQRNNCNACNRNAPSQPSS
PPYPTPSX
Run BLAST on NCBI

transcript from alignment at scaffold_47:2353..2678

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067515 ID=TCONS_00067515|Name=TCONS_00067515|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at scaffold_47:2353..2678 (Clytia hemisphaerica)
CACTGGAAGATGGATTCCCAAACAAGAAAGAGGACCTTCCACCAGACATC
CAACAATACCATCAATACAGAAGTGATCTCCATTACGTTGATGGTGTCGT
GTTATACAACCACAGGATTATCATCCCACCGTCACTTAGGGCCCAGATCC
TGGATTCCCTTCATGCAGCCCACCAAAGCACTGGCATGATGCTATCCCGT
GCTAAGTCATCAGTATTCTGGCCAGATATCACCAAAGATATTCAACAACA
ACGCAACAATTGTAATGCCTGCAACCGAAACGCTCCATCGCAACCAAGCT
CACCTCCATATCCAACACCATCTCCN

Coding sequence (CDS) from alignment at scaffold_47:2353..2678

>TCONS_00067515 ID=TCONS_00067515|Name=TCONS_00067515|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_47:2353..2678 (Clytia hemisphaerica)
CTGGAAGATGGATTCCCAAACAAGAAAGAGGACCTTCCACCAGACATCCA
ACAATACCATCAATACAGAAGTGATCTCCATTACGTTGATGGTGTCGTGT
TATACAACCACAGGATTATCATCCCACCGTCACTTAGGGCCCAGATCCTG
GATTCCCTTCATGCAGCCCACCAAAGCACTGGCATGATGCTATCCCGTGC
TAAGTCATCAGTATTCTGGCCAGATATCACCAAAGATATTCAACAACAAC
GCAACAATTGTAATGCCTGCAACCGAAACGCTCCATCGCAACCAAGCTCA
CCTCCATATCCAACACCATCTCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042157XLOC_042157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067515-exon-scaffold_47-1491911889:2353..2678TCONS_00067515-exon-scaffold_47-1491911889:2353..2678Clytia hemisphaericaexon
TCONS_00067515-exon-scaffold_47-1510915933:2353..2678TCONS_00067515-exon-scaffold_47-1510915933:2353..2678Clytia hemisphaericaexon
TCONS_00067515-exon-scaffold_47-1575043694:2353..2678TCONS_00067515-exon-scaffold_47-1575043694:2353..2678Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067515-proteinTCONS_00067515-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_47supercontigscaffold_47:2353..2678 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.79699	1.62616	2.41152	1.63694	2.39423	0.402718	0	0.729903	0.446629	0.316492	1.80401	0.303095	0.604971	0.209423	0.172174	0.230287	1.1381	0.933213	0.43577	0	0.362235	1.15709	0.547256	1.40792	0.651091	0.871624	0	0.887429	0.849373	1.37153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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