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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067201 ID=TCONS_00067201|Name=TCONS_00067201|organism=Clytia hemisphaerica|type=transcript|length=1511bp
GTTTTAAAAGGAGTTTTTCACAGTTTCTGTTTGAGCACTTTGTGTAATGT
CAAGTATAATACTGCAATACATTTTGTATTTGATGGTATATTTGCTGTTT
AGAAAATTTGAGCTTTATTTGAAGAAGAGAGAGAATCCGTTTCAACGTCT
AAACAGTTATGATTTTGAGGAGATCAACTCGACGATGTATTACTGGAAGT
TTACTTATACTGATTGGATTCGGtattcttttcttattttcacaacaATC
TCTACGTCTTGAAAATATTCACGATCGATCAAATCACCACAAATTATCTG
ACGTGGCGCAGGTGAAAAGAGGTAATGAGCGCCATTCAGAATCGAATGTG
GATGTACATCAGAGAGccttagaaaaaatcaaaataaatcaagTTGAATC
CGTTATCAAAGTTGGTGCAgcagaaaatgagaaaaaattcgAATCGCTAA
AGAAAGAATCTATTTCAAACAAAGTTATTGAAGAAATAGATGAAAATCCA
CCATTGAATAAACAACCTGAGATTGTTTACGAAAAATTACCCGTTGTAAA
AGACATGCAGAATGATTTAAAAATTCACGAAGTTAACAGACATGACACTG
GAATCAAACTGTATAAAGAAGAACCACTTGTCAGCGTTAAAGATGATACT
TTACAGACCACagaaaaaccttttaaaaaagCTGAATACAAGATCACATC
TGGGTTTGTAGAATATATACCAGGTGAAAAAGGTGCGTTCCATATAGTGC
AGAATTTTCTTTTGTATATAGATCCAGATTTTACCGAACCAGTAAATGCA
TCTCAAAGCAAGAGAGCTAAAAAACAGAACGAGCTGGAACAAACATTGCA
ATCGAATCTCAACCACCCCGTTATAAATCGTATACATATCATGTACTCTC
ATAAACCTTTATTTCAGTATCTCCAAAAACTAAACCTAACAAACCGCCAT
AAATTAATAACAGTCTATTTTGAAGATACACCAAAAATTAGTGATTTTCT
GCAATATATCGAAGATAAACTACAAAACAGATACGTCATTGTTAATAATC
AAGATATTGAAATAGGTGAAGAATGGGACGCAATAGATCTCGGCAAATTC
CGTGAACAACGAATCATGTATGCGATATCGCGTAATGTCAAGGCTCACCA
TATGGCAGATAAGAACTGTTATGCGTCTTATACTGCTAATTGTAACCCGG
GGCAGCCTGATTACGGGTCAGCCGATTTATTCGCATTTTATAATGAGGGG
AAAGTTCCTCCTGCTATGATGAAAGAGATGTCATACACTCAAGCGAAATA
TGGTATGGAAAATGTCTTCATGTGGTATGCTAAATTTGAATGGCATTATA
ATTTGTTTAACCCTTGTAAGGTATTGAAAATCTACCATGTTGATTGCTac
catattgataaaaaaggcCGTGACCGACAGAAACGAAATGATCACGTGTT
AACGGTACCATTTACGAACCAATTGTATTTaaatttttagggttttttct
ttttgaattat Run BLAST on NCBI transcript from alignment at scaffold_466:352200..354084+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067201 ID=TCONS_00067201|Name=TCONS_00067201|organism=Clytia hemisphaerica|type=transcript|length=1885bp|location=Sequence derived from alignment at scaffold_466:352200..354084+ (Clytia hemisphaerica)
GTTTTAAAAGGAGTTTTTCACAGTTTCTGTTTGAGCACTTTGTGTAATGT
CAAGTATAATACTGCAATACATTTTGTATTTGATGGTATATTTGCTGTTT
AGAAAATTTGAGCTTTATTTGAAGAAGAGAGAGAATCCGTTTCAACGTCT
AAACAGTTATGATTTTGAGGGTAAGTTCATATTgatattttaaaacattt
tgagtCGAGAGCTCCTTCCAAATTATCCATAGTATGTTCAGTGTTCATAT
TCGCGATTACTTATTGGCCTTCAAGTAGACAGCCAAAAAACGTATATGCT
ATAGATCTAGTAGCAAAGACAAGCGACGCAAAATTATAGCAAAGTACAGC
AGAGCAGATTTTATGACACGgtaattttgattttgtattaTGAATAATtt
cagtgtcataaaaatctgacACAAATTTTATTTGCGCCCCTTTTGTTTTG
TCTTTGCTGCTGGATATAATCTAAGGACACTTTAGTCTAAATATTATTTT
AGACTTAGTAACTTCTTAAAGctttaaattcattttctttaCAGAGATCA
ACTCGACGATGTATTACTGGAAGTTTACTTATACTGATTGGATTCGGtat
tcttttcttattttcacaacaATCTCTACGTCTTGAAAATATTCACGATC
GATCAAATCACCACAAATTATCTGACGTGGCGCAGGTGAAAAGAGGTAAT
GAGCGCCATTCAGAATCGAATGTGGATGTACATCAGAGAGccttagaaaa
aatcaaaataaatcaagTTGAATCCGTTATCAAAGTTGGTGCAgcagaaa
atgagaaaaaattcgAATCGCTAAAGAAAGAATCTATTTCAAACAAAGTT
ATTGAAGAAATAGATGAAAATCCACCATTGAATAAACAACCTGAGATTGT
TTACGAAAAATTACCCGTTGTAAAAGACATGCAGAATGATTTAAAAATTC
ACGAAGTTAACAGACATGACACTGGAATCAAACTGTATAAAGAAGAACCA
CTTGTCAGCGTTAAAGATGATACTTTACAGACCACagaaaaaccttttaa
aaaagCTGAATACAAGATCACATCTGGGTTTGTAGAATATATACCAGGTG
AAAAAGGTGCGTTCCATATAGTGCAGAATTTTCTTTTGTATATAGATCCA
GATTTTACCGAACCAGTAAATGCATCTCAAAGCAAGAGAGCTAAAAAACA
GAACGAGCTGGAACAAACATTGCAATCGAATCTCAACCACCCCGTTATAA
ATCGTATACATATCATGTACTCTCATAAACCTTTATTTCAGTATCTCCAA
AAACTAAACCTAACAAACCGCCATAAATTAATAACAGTCTATTTTGAAGA
TACACCAAAAATTAGTGATTTTCTGCAATATATCGAAGATAAACTACAAA
ACAGATACGTCATTGTTAATAATCAAGATATTGAAATAGGTGAAGAATGG
GACGCAATAGATCTCGGCAAATTCCGTGAACAACGAATCATGTATGCGAT
ATCGCGTAATGTCAAGGCTCACCATATGGCAGATAAGAACTGTTATGCGT
CTTATACTGCTAATTGTAACCCGGGGCAGCCTGATTACGGGTCAGCCGAT
TTATTCGCATTTTATAATGAGGGGAAAGTTCCTCCTGCTATGATGAAAGA
GATGTCATACACTCAAGCGAAATATGGTATGGAAAATGTCTTCATGTGGT
ATGCTAAATTTGAATGGCATTATAATTTGTTTAACCCTTGTAAGGTATTG
AAAATCTACCATGTTGATTGCTaccatattgataaaaaaggcCGTGACCG
ACAGAAACGAAATGATCACGTGTTAACGGTACCATTTACGAACCAATTGT
ATTTaaatttttagggttttttctttttgaattat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067201-exon-scaffold_466-1491911889:352200..352369 | TCONS_00067201-exon-scaffold_466-1491911889:352200..352369 | Clytia hemisphaerica | exon |
| TCONS_00067201-exon-scaffold_466-1510915933:352200..352369 | TCONS_00067201-exon-scaffold_466-1510915933:352200..352369 | Clytia hemisphaerica | exon |
| TCONS_00067201-exon-scaffold_466-1575043694:352200..352369 | TCONS_00067201-exon-scaffold_466-1575043694:352200..352369 | Clytia hemisphaerica | exon |
| TCONS_00067201-exon-scaffold_466-1491911889:352744..354084 | TCONS_00067201-exon-scaffold_466-1491911889:352744..354084 | Clytia hemisphaerica | exon |
| TCONS_00067201-exon-scaffold_466-1510915933:352744..354084 | TCONS_00067201-exon-scaffold_466-1510915933:352744..354084 | Clytia hemisphaerica | exon |
| TCONS_00067201-exon-scaffold_466-1575043694:352744..354084 | TCONS_00067201-exon-scaffold_466-1575043694:352744..354084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_466 | supercontig | scaffold_466:352200..354084 + |
Blast
The following BLAST results are available for this feature:
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