TCONS_00067087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067087
Unique NameTCONS_00067087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067087 ID=TCONS_00067087|Name=TCONS_00067087|organism=Clytia hemisphaerica|type=transcript|length=807bp
tacaccATATACCCCCTGTTAAGGAGGTTCATTCCCATTCCAAAGTGGTG
ATGTTTGATATGTGATGGAATTCCATAGTGatatacaaaaatcttttaca
aaaatacagCATTATACGGaaaaaattgcctggaattccaggtgGTTACA
TGATTTCCAGCCATCAAGGATTGGCAGGGggtattagtttttttttctgt
ataATCCTATTTGAAGCTGAAGATTTTAGGTAAAAATGCAGgcaaatttt
caggattttgagCTGCTACCGTTTTTATTCTAAAGATTGAGTTTGAATTC
AGTTCGAAGAACAAAATAATCAACCCATGCTCTGTTAATTAGTTGAGAAc
tattaaaacacaaagaagTAACCTCAGAATGGGCTTTTTCTGTTAATTAA
GGGCCTAGAACATCGAATTTTTGTCATGATTCTCATGGCTCATGTACAAA
AATTTGGActaagtttcaaaattcaagcaaAGATTGAGTTTCTGCCACTG
CTATCCAGTAGCAGAAAAGGCCTGGGAATTTCCCTGAAATGCTATAATGC
TAAAATTTTACTGTGGTGTTCACCTTTGAAATTGAGATTCGTCATTTGTC
ATACAGAGGAATATTCAATGTTTTCCTATGACAAAAAGCCCAATCTTAAT
ACAGAACAGAAtagaaagattttcaattttccaaggcACATGTTTGAGAT
TggcctctctctctctctttacAAAGGTGTTCATTGTACTCATGGCTTCA
ACAGGACAGGCTTTCTGATTGTTTCTTATCTTTGCGAGACTGAAGAATGG
AGGTATG
Run BLAST on NCBI

transcript from alignment at scaffold_463:301428..302234+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067087 ID=TCONS_00067087|Name=TCONS_00067087|organism=Clytia hemisphaerica|type=transcript|length=807bp|location=Sequence derived from alignment at scaffold_463:301428..302234+ (Clytia hemisphaerica)
tacaccATATACCCCCTGTTAAGGAGGTTCATTCCCATTCCAAAGTGGTG
ATGTTTGATATGTGATGGAATTCCATAGTGatatacaaaaatcttttaca
aaaatacagCATTATACGGaaaaaattgcctggaattccaggtgGTTACA
TGATTTCCAGCCATCAAGGATTGGCAGGGggtattagtttttttttctgt
ataATCCTATTTGAAGCTGAAGATTTTAGGTAAAAATGCAGgcaaatttt
caggattttgagCTGCTACCGTTTTTATTCTAAAGATTGAGTTTGAATTC
AGTTCGAAGAACAAAATAATCAACCCATGCTCTGTTAATTAGTTGAGAAc
tattaaaacacaaagaagTAACCTCAGAATGGGCTTTTTCTGTTAATTAA
GGGCCTAGAACATCGAATTTTTGTCATGATTCTCATGGCTCATGTACAAA
AATTTGGActaagtttcaaaattcaagcaaAGATTGAGTTTCTGCCACTG
CTATCCAGTAGCAGAAAAGGCCTGGGAATTTCCCTGAAATGCTATAATGC
TAAAATTTTACTGTGGTGTTCACCTTTGAAATTGAGATTCGTCATTTGTC
ATACAGAGGAATATTCAATGTTTTCCTATGACAAAAAGCCCAATCTTAAT
ACAGAACAGAAtagaaagattttcaattttccaaggcACATGTTTGAGAT
TggcctctctctctctctttacAAAGGTGTTCATTGTACTCATGGCTTCA
ACAGGACAGGCTTTCTGATTGTTTCTTATCTTTGCGAGACTGAAGAATGG
AGGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041917XLOC_041917Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067087-exon-scaffold_463-1491911889:301428..302234TCONS_00067087-exon-scaffold_463-1491911889:301428..302234Clytia hemisphaericaexon
TCONS_00067087-exon-scaffold_463-1510915933:301428..302234TCONS_00067087-exon-scaffold_463-1510915933:301428..302234Clytia hemisphaericaexon
TCONS_00067087-exon-scaffold_463-1575043694:301428..302234TCONS_00067087-exon-scaffold_463-1575043694:301428..302234Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_463supercontigscaffold_463:301428..302234 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36992	0.437417	0.713069	1.43245	2.72844	1.48911	0.794568	1.24355	0.862069	0.991812	1.07171	0.39482	0.124997	0.340323	0.461906	0.307823	0.526336	0.343471	0.136153	0.070545	0.54004	0.354343	0.36448	0.271598	0.357401	0	0.425824	0.0911515	0.142812	0.284632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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