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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067052 ID=TCONS_00067052|Name=TCONS_00067052|organism=Clytia hemisphaerica|type=transcript|length=1116bp
ACATGAACCACGAGTACGGTTGGCGGATGATAATTTGCGAAAAATAAACA
GAATCTTGCAGGACAATTGAAATATCATTGATAACACGCCTACGAGAGAA
TACTATtgcaaaaatgaaagttttcaagaagttgtttttcaaaaacagca
TTGCTAACGATTTTATTGAAATGTGCACGCGTGATAGTGATGCTCACGTT
AGTACCAGTCTCCCCGAAGTCATCATCTCAACTGCTCCTATATTGGTCAA
TCAACCGGTAACCGAAAACGAAGAGTTGTACGAAGTACCAACACCAGAAG
CTAAACGTAAATCGGTTGATCACCAATGTGGTTGTCGACTTATTCCAAAA
CAAAGGCAATCAGCACCTGACAATCGAATCCCAAAGCTGTCAATCACCAG
CATGGAATGTCCAATCTGCTTCGAAGACTTCAAACCCACCACCAAGATTT
ACCAATGCTTTAATGGTCATTTGTACTGTGGAGATTGTAAACCGAAATTG
GATTGTTTGATGTGCCCACAATGTAGACAACCACTTCCTGAAGATGGCAT
TCGCAATGTTTTCTTGGAGAAAATCATTAAACGTATTTATGAACGAAAAC
CTTCAACTGGACAACAACCGAATCCATAAAGGACACAATCATAAACTGAT
TTTTTAGCTTACTCGGATCTCGGATATCGGACATTGGATATTGGATTACT
GGATTTACGTTACTGCAATTTTTGTTACTGGTAcctatttttcacttttt
ttttagaataacACGGAGTATagcattgttttttttgtcaattttaaggC
ACTAGCACATAGTCCCAACTTAGCAAATAATTCTTTAGCAAACATAAGCG
TTTATTTCTTTAATcagttttataatttttctttggGATTTTCAATTCAC
ACTAGCAAATAAATTAGATTTCACGTAAAATGTATTTCGAGTTTACTCTT
TGACCCAAAAGGTACTATATGCCTATTGTATACCTCATGATTTCACTTGT
AAAGCTATACTTGAATTTTAGTTTTATAAATACCTGTAAATATGTACATA
GATTTTACCAGAAAGTTTTTGCGTTAAAAGTAAAAGTacaacttagaaaa
aaagaaataatcaTCA Run BLAST on NCBI protein sequence of TCONS_00067052-protein >TCONS_00067052-protein ID=TCONS_00067052-protein|Name=TCONS_00067052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
MKVFKKLFFKNSIANDFIEMCTRDSDAHVSTSLPEVIISTAPILVNQPVT
ENEELYEVPTPEAKRKSVDHQCGCRLIPKQRQSAPDNRIPKLSITSMECP
ICFEDFKPTTKIYQCFNGHLYCGDCKPKLDCLMCPQCRQPLPEDGIRNVF
LEKIIKRIYERKPSTGQQPNP Run BLAST on NCBI transcript from alignment at scaffold_462:713057..714172 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067052 ID=TCONS_00067052|Name=TCONS_00067052|organism=Clytia hemisphaerica|type=transcript|length=1116bp|location=Sequence derived from alignment at scaffold_462:713057..714172 (Clytia hemisphaerica)
TGAtgattatttctttttttctaagttgtACTTTTACTTTTAACGCAAAA
ACTTTCTGGTAAAATCTATGTACATATTTACAGGTATTTATAAAACTAAA
ATTCAAGTATAGCTTTACAAGTGAAATCATGAGGTATACAATAGGCATAT
AGTACCTTTTGGGTCAAAGAGTAAACTCGAAATACATTTTACGTGAAATC
TAATTTATTTGCTAGTGTGAATTGAAAATCccaaagaaaaattataaaac
tgATTAAAGAAATAAACGCTTATGTTTGCTAAAGAATTATTTGCTAAGTT
GGGACTATGTGCTAGTGccttaaaattgacaaaaaaaacaatgctATACT
CCGTgttattctaaaaaaaaagtgaaaaataggTACCAGTAACAAAAATT
GCAGTAACGTAAATCCAGTAATCCAATATCCAATGTCCGATATCCGAGAT
CCGAGTAAGCTAAAAAATCAGTTTATGATTGTGTCCTTTATGGATTCGGT
TGTTGTCCAGTTGAAGGTTTTCGTTCATAAATACGTTTAATGATTTTCTC
CAAGAAAACATTGCGAATGCCATCTTCAGGAAGTGGTTGTCTACATTGTG
GGCACATCAAACAATCCAATTTCGGTTTACAATCTCCACAGTACAAATGA
CCATTAAAGCATTGGTAAATCTTGGTGGTGGGTTTGAAGTCTTCGAAGCA
GATTGGACATTCCATGCTGGTGATTGACAGCTTTGGGATTCGATTGTCAG
GTGCTGATTGCCTTTGTTTTGGAATAAGTCGACAACCACATTGGTGATCA
ACCGATTTACGTTTAGCTTCTGGTGTTGGTACTTCGTACAACTCTTCGTT
TTCGGTTACCGGTTGATTGACCAATATAGGAGCAGTTGAGATGATGACTT
CGGGGAGACTGGTACTAACGTGAGCATCACTATCACGCGTGCACATTTCA
ATAAAATCGTTAGCAAtgctgtttttgaaaaacaacttcttgaaaacttt
catttttgcaATAGTATTCTCTCGTAGGCGTGTTATCAATGATATTTCAA
TTGTCCTGCAAGATTCTGTTTATTTTTCGCAAATTATCATCCGCCAACCG
TACTCGTGGTTCATGT Coding sequence (CDS) from alignment at scaffold_462:713057..714172 >TCONS_00067052 ID=TCONS_00067052|Name=TCONS_00067052|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at scaffold_462:713057..714172 (Clytia hemisphaerica)
TTATGGATTCGGTTGTTGTCCAGTTGAAGGTTTTCGTTCATAAATACGTT
TAATGATTTTCTCCAAGAAAACATTGCGAATGCCATCTTCAGGAAGTGGT
TGTCTACATTGTGGGCACATCAAACAATCCAATTTCGGTTTACAATCTCC
ACAGTACAAATGACCATTAAAGCATTGGTAAATCTTGGTGGTGGGTTTGA
AGTCTTCGAAGCAGATTGGACATTCCATGCTGGTGATTGACAGCTTTGGG
ATTCGATTGTCAGGTGCTGATTGCCTTTGTTTTGGAATAAGTCGACAACC
ACATTGGTGATCAACCGATTTACGTTTAGCTTCTGGTGTTGGTACTTCGT
ACAACTCTTCGTTTTCGGTTACCGGTTGATTGACCAATATAGGAGCAGTT
GAGATGATGACTTCGGGGAGACTGGTACTAACGTGAGCATCACTATCACG
CGTGCACATTTCAATAAAATCGTTAGCAAtgctgtttttgaaaaacaact
tcttgaaaactttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067052-exon-scaffold_462-1491911889:713057..714172 | TCONS_00067052-exon-scaffold_462-1491911889:713057..714172 | Clytia hemisphaerica | exon |
| TCONS_00067052-exon-scaffold_462-1510915933:713057..714172 | TCONS_00067052-exon-scaffold_462-1510915933:713057..714172 | Clytia hemisphaerica | exon |
| TCONS_00067052-exon-scaffold_462-1575043694:713057..714172 | TCONS_00067052-exon-scaffold_462-1575043694:713057..714172 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:713057..714172 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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