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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066993 ID=TCONS_00066993|Name=TCONS_00066993|organism=Clytia hemisphaerica|type=transcript|length=1751bp
ttttaaggataaaaaagGAAAACTGAATCTTaggaaaaatacaaatattt
gTAGAAAGTATACAATACAATGGTTTTTGTACGAGctacccatgttttga
agaaaactaCTGCAGACCTTTACAAACCATTAATAAGAGGTATCCTGATC
CGGTCTGCAAGCACCACAGCACAAGATAATACTATTAAATACAACAAAGA
AATTGTCATCAAAAATGTGGATGAATCTCAAGAATCTCCTTTAGTAGTCA
TCATTGGGTGGAGTAACAGTAATTTACGGCAAATTGAAAAATACAGTCAA
ATTTATGAAGATCTTGGATGTACTGTTGTATCCTCTTCCATGCAGTTGTA
TCGGTTCTCAATGTTTTATGATACACTTTTTGCTCAGGACACacaaaatg
tcatcaatgctatGACTACACAACGTAATTTCAACACAAGCCGTAAagta
tttttcaagttgttcaGCACACCAGGTCCAGCAATGTATGTCAACATAAT
GAATTATTATTTCCCATATATCGAGCAACATTTTGGTACAGTGCCTAAAT
TTCAATTGAGTGAAGATGAAACAAAACCTAATATTTGTGGTGTCATTTAT
GATTCTGCAACAGTTGAATCTGGTAATGCCCATCAATTTGCAAATGGTAT
GCGTGGCAACTCGACTGGTGTTCTAAGTAATATGGTTTTCAATGTTCTTG
GCAAAATGGTATATGCTTATGCAGTACGCACGTCTAAAATGCATAATTAC
GGTCCTGAGTTTTTACGTAATATCCCAGTCATGTTACCACAAATGTTTTT
ATcttctgaaaatgataaaatagcTTCGATTGAGAGTGTAAGAAATTTTG
TTGAACACCAGAAAGAAATGGGTGTTCCATTGTTGAAATCGAAAGTTTGG
GAAAATTCTGATCACGTGTTACATTACCGTAAATATCCAGAGGAATACAA
GGCCTTGGTCGATGGATTCATGAAAGAATGCCTTGATTTGTCTCAAGTAC
AAACAACagagaaaaaagaaagtgtagttgccgaaaataaaaaacaagtt
cACCACCAAGTAgaaatttaatcaaactttgaacTATTTTTTATGGAAGC
TGACCCGGCTGTCACCTTTTGTCGCATCGAAAAGGATTGTTTTAAAtcct
aaaaaatcaaaaatgataattactgtagtgttggaaattttgaatttaat
ttatatGTATGAAAAATTGGATATTACATATTGGATTTCTAGATAATATG
AAGTCTCCAGAAGACCTGAACCAAATATAAACTTGATGTTTTATATGGAG
ATGATTCGATTGAGATAAACAATTTCTTGAACTTTCTATGCATGCAAACA
ACAAGGTAGGTAGGCTTTCATCAGTTTTATTCCCATCACAAGAGTTGTCA
ATGTCAATATAATAGAGACTGTCGGTTGATTTAAAAGGGTTGGTTTAGGG
GGATTTCTGACAGAAAGATTTCCTTGGGAAGCTGAGAAATGTTTCATCTG
CAATAGATGGACTATTGCTTTTCAAAGGCACTGTCTATTTTATAACTCAt
acaatttctaattttatacATTAACATTAGAAGGTTTCTCTAGTTTGTAT
TTTCAAATTGTTCTATATAATCAAGCTTTCAAAACATTGTAATTTTTTAG
TATCATTTTCATAGAGTAAGTTggtatatatatttttgtgGTAATTTTAG
GAAAATATTATAATTATGAATCTTTTGGAGAAAATTACATTTAAAACTGA
A Run BLAST on NCBI transcript from alignment at scaffold_462:663920..666102- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066993 ID=TCONS_00066993|Name=TCONS_00066993|organism=Clytia hemisphaerica|type=transcript|length=2183bp|location=Sequence derived from alignment at scaffold_462:663920..666102- (Clytia hemisphaerica)
TTTTAAGGATAAAAAAGGAAAACTGAATCTTAGGAAAAATACAAATATTT
GTAGAAAGTATACAATACAATGGTTTTTGTACGAGGTATAATTTCCATAC
TTTATTAACACTGAATACACCTATCAACTTTTAGCGACACGATCAGCTTT
TTAGGGAACTGGTAATGAATTTACAAGGAAGATATTTTTGTTACCAGCCT
TCTTCGCTCCGCTCTGTATTTATAAGTGTATTGAAAATTGCTTACCTTCT
CCCTACCTTGTTTTTTTTCTAAGCCTGTTCTTTTACATACAGTCTGGAAT
GATAACCAACCTATGAAAATTCTTTTAAAATCTTACGTACTGAACATAAA
GCGAAGGGATTTTACTTCATTCTTTATCACAGAGCTTTTTTTAATTTTTA
GCTACCCATGTTTTGAAGAAAACTACTGCAGACCTTTACAAACCATTAAT
AAGAGGTATCCTGATCCGGTCTGCAAGCACCACAGCACAAGATAATACTA
TTAAATACAACAAAGAAATTGTCATCAAAAATGTGGATGAATCTCAAGAA
TCTCCTTTAGTAGTCATCATTGGGTGGAGTAACAGTAATTTACGGCAAAT
TGAAAAATACAGTCAAATTTATGAAGATCTTGGATGTACTGTTGTATCCT
CTTCCATGCAGTTGTATCGGTTCTCAATGTTTTATGATACACTTTTTGCT
CAGGACACACAAAATGTCATCAATGCTATGACTACACAACGTAATTTCAA
CACAAGCCGTAAAGTATTTTTCAAGTTGTTCAGCACACCAGGTCCAGCAA
TGTATGTCAACATAATGAATTATTATTTCCCATATATCGAGCAACATTTT
GGTACAGTGCCTAAATTTCAATTGAGTGAAGATGAAACAAAACCTAATAT
TTGTGGTGTCATTTATGATTCTGCAACAGTTGAATCTGGTAATGCCCATC
AATTTGCAAATGGTATGCGTGGCAACTCGACTGGTGTTCTAAGTAATATG
GTTTTCAATGTTCTTGGCAAAATGGTATATGCTTATGCAGTACGCACGTC
TAAAATGCATAATTACGGTCCTGAGTTTTTACGTAATATCCCAGTCATGT
TACCACAAATGTTTTTATCTTCTGAAAATGATAAAATAGCTTCGATTGAG
AGTGTAAGAAATTTTGTTGAACACCAGAAAGAAATGGGTGTTCCATTGTT
GAAATCGAAAGTTTGGGAAAATTCTGATCACGTGTTACATTACCGTAAAT
ATCCAGAGGAATACAAGGCCTTGGTCGATGGATTCATGAAAGAATGCCTT
GATTTGTCTCAAGTACAAACAACAGAGAAAAAAGAAAGTGTAGTTGCCGA
AAATAAAAAACAAGTTCACCACCAAGTAGAAATTTAATCAAACTTTGAAC
TATTTTTTATGGAAGCTGACCCGGCTGTCACCTTTTGTCGCATCGAAAAG
GATTGTTTTAAATCCTAAAAAATCAAAAATGATAATTACTGTAGTGTTGG
AAATTTTGAATTTAATTTATATGTATGAAAAATTGGATATTACATATTGG
ATTTCTAGATAATATGAAGTCTCCAGAAGACCTGAACCAAATATAAACTT
GATGTTTTATATGGAGATGATTCGATTGAGATAAACAATTTCTTGAACTT
TCTATGCATGCAAACAACAAGGTAGGTAGGTAGAATTATTACAAAATACT
TTTCTCTCTACTTTCTTTAATAAAAACCATAATTTCGTATCACGGTCTTC
AATTTTAGCAATGTATCGAAATATTCAAATCTTACCAAGAGGTAGGCTTT
CATCAGTTTTATTCCCATCACAAGAGTTGTCAATGTCAATATAATAGAGA
CTGTCGGTTGATTTAAAAGGGTTGGTTTAGGGGGATTTCTGACAGAAAGA
TTTCCTTGGGAAGCTGAGAAATGTTTCATCTGCAATAGATGGACTATTGC
TTTTCAAAGGCACTGTCTATTTTATAACTCATACAATTTCTAATTTTATA
CATTAACATTAGAAGGTTTCTCTAGTTTGTATTTTCAAATTGTTCTATAT
AATCAAGCTTTCAAAACATTGTAATTTTTTAGTATCATTTTCATAGAGTA
AGTTGGTATATATATTTTTGTGGTAATTTTAGGAAAATATTATAATTATG
AATCTTTTGGAGAAAATTACATTTAAAACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066993-exon-scaffold_462-1575043694:666018..666102 | TCONS_00066993-exon-scaffold_462-1575043694:666018..666102 | Clytia hemisphaerica | exon |
| TCONS_00066993-exon-scaffold_462-1575043694:664424..665701 | TCONS_00066993-exon-scaffold_462-1575043694:664424..665701 | Clytia hemisphaerica | exon |
| TCONS_00066993-exon-scaffold_462-1575043694:663920..664307 | TCONS_00066993-exon-scaffold_462-1575043694:663920..664307 | Clytia hemisphaerica | exon |
| TCONS_00066993-exon-scaffold_462-1510915933:666018..666102 | TCONS_00066993-exon-scaffold_462-1510915933:666018..666102 | Clytia hemisphaerica | exon |
| TCONS_00066993-exon-scaffold_462-1510915933:664424..665701 | TCONS_00066993-exon-scaffold_462-1510915933:664424..665701 | Clytia hemisphaerica | exon |
| TCONS_00066993-exon-scaffold_462-1510915933:663920..664307 | TCONS_00066993-exon-scaffold_462-1510915933:663920..664307 | Clytia hemisphaerica | exon |
| TCONS_00066993-exon-scaffold_462-1491911889:666018..666102 | TCONS_00066993-exon-scaffold_462-1491911889:666018..666102 | Clytia hemisphaerica | exon |
| TCONS_00066993-exon-scaffold_462-1491911889:664424..665701 | TCONS_00066993-exon-scaffold_462-1491911889:664424..665701 | Clytia hemisphaerica | exon |
| TCONS_00066993-exon-scaffold_462-1491911889:663920..664307 | TCONS_00066993-exon-scaffold_462-1491911889:663920..664307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:663920..666102 - |
Blast
The following BLAST results are available for this feature:
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