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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066883 ID=TCONS_00066883|Name=TCONS_00066883|organism=Clytia hemisphaerica|type=transcript|length=2691bpRun BLAST on NCBI transcript from alignment at scaffold_462:512462..555128+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066883 ID=TCONS_00066883|Name=TCONS_00066883|organism=Clytia hemisphaerica|type=transcript|length=42667bp|location=Sequence derived from alignment at scaffold_462:512462..555128+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066883 vs. Swiss-Prot (Human)
Match: CPSF2 (Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens GN=CPSF2 PE=1 SV=2) HSP 1 Score: 570.466 bits (1469), Expect = 0.000e+0 Identity = 308/607 (50.74%), Postives = 411/607 (67.71%), Query Frame = 3
Query: 9 LETLSRPALLITDAFNAVKQQALRRERDIQLMNQILTTVRKDGNVLLACDTAGRILELTQLLDQLWRSQDSGLSVYSLVVMNNVVYNTVEFAKSQVEWMSDKMIKSFEATRTNPFSFKHIVQCHSIKEVEDVPSPKVVLASTADLNSGFSREIFISWAPDPKNTVIFTYSTAPGSLARQLIDNPDTKSIEIEVNKKVKLEGAELAEFLENEKEKARLTRLTRKSLTSETGDNVFKQXXXXXXXXXNALDLKSKYDLMLTDEKLRSKSSFFKQA-KIYPMFPYKEDRLKWDDYGEVIRPEDYMITETMMLDQPEVPEENDEMKLQQTXXXXXXXXXXXXXXXPPTKCISQTIQLDIRCTLAYIDFEGRSDGESVKRILSLVKPRQLILVHATEQATRTLADHCRNSNNMTISNIYTPVVNETVDATRESHIYQVKLKDALVSSLKFSTAQDIELAWVDGQL----------VMEERGE-KFDKMETDFQ-----------------------------KKEVVPVLEQMPQELVPGHSSVFIGEPRLSDFKQVLTRNGIQAEFAGGALICNNVVAVKRNETGKITLEGGLCPEYYQIRELLYEQYAIV 1706
LE LSRP+LLITD+FNA Q R++RD QL+ +L T+R DGNVL+A DTAGR+LEL QLLDQ+WR++D+GL VYSL ++NNV YN VEF+KSQVEWMSDK+++ FE R NPF F+H+ CH + ++ VPSPKVVLAS DL GFSR++FI W DPKN++I TY T PG+LAR LIDNP K EIE+ K+VKLEG EL E+LE EK K + +S ++ D+ + + E + ++ +A K+K+DLM+ E R K SFFKQA K YPMFP E+R+KWD+YGE+I+PED+++ PE+ +E ++ +E ++ + PTKCIS T ++I+ + YID+EGRSDG+S+K+I++ +KPRQLI+VH +A++ LA+ CR I +Y P ++ETVDAT E+HIYQV+LKD+LVSSL+F A+D ELAW+DG L V+ E GE K D +++ Q + E++P LE +P VPGH SVF+ EPRLSDFKQVL R GIQAEF GG L+CNN VAV+R ETG+I LEG LC ++Y+IR+LLYEQYAIV
Sbjct: 189 LEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQSKEADI-DSSDESDIEEDIDQPSA--HKTKHDLMMKGEGSR-KGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLV--------PELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI-KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782 The following BLAST results are available for this feature:
BLAST of TCONS_00066883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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