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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066522 ID=TCONS_00066522|Name=TCONS_00066522|organism=Clytia hemisphaerica|type=transcript|length=1564bp
caatagaaAGAAAAGATTCTACAGCTTATTCTTCAATAGATGGATAGCac
atttcttatcctctttttccaaaattggtATAAATACACTGAAATTTAAC
TGGATTAATCAATCCAGACTTCACTCTAGATTGCTGAAGAAGTTGTTCTT
TCACCAACTGAAAGTCCATTGATAAGCAACCATGTTGAGAGTTTTGATAA
CCATTGCTTTACTTGGCGTTGCTTCTGCAGCTGTTTCAACCAAGATCGCC
AACTGGTGGACTACATTTGATCATGGTGGTTGGTCCAAATGTGCTGATGG
CCATTTCCTGACTGGTATGTGGAGAAGTGCTCGTCAGCTTGGAGATGAAA
GAATCGGCAGAATCGAACAAGGAGATTGTAAAAGTGCTGACAGTGCATAT
ACCGGAGATTGCAAACAAATGGATTGCTACAAGCTGAATATCTGGtcaat
tttcgacaaaaaaggTTGGGCAACATGCAAACCTGGCTACTTTATCCAAT
CCATCTTTTCCACCAAAGGAAAAGGCCTTCACAACATCGAGGAATTCCAA
TGCTGTAAACCAAGATCTAAGAAAGTCAAGCAAGGTCAATGCTACATCCA
AAACGTTTGGAAATCCTTTGACAACAAAGGTTGGTCTAAATGCAAAGCTG
GATATTACATGCAAGGTATGTTCAGAAACAGCTGTGACAAATTGTATTGT
CTTGAGGAATTCAAATGCTGTAATATGGTCGCTACAGACTCGTCTGTCTC
AACCAAGATTGCCAACTGGTGGAGTACATTCGACCATGGTGGTTGGTCCA
AATGTGCTGCTGGACATTTCCTGACTGGTATGTGGAGAAGTCCTCGTCAG
ATTGGAGATGAAAGAATCGGCAGAATCGAACAAGGAGATTGTAAATCTGC
ACCAAAGAATCTTGGATCTGGACAAGAATGCTACAAATTGAATATCTGGt
caattttcgacaaaaaaggATGGGCAAATTGCAAACCTGGTTATTACATG
CAGTCTATCTACTCCACCAAAGGAAAGGGCCTCCACCATATTGAGGAATT
CCAATGTTGCAGACCAAGCGGAGGGGTGACAGTTGATGGTCAATGCTACA
TCCAAAATGTCTGGAAATCCTTTGACAACAAAGGTTGGTCTAAATGCAAA
GCTGGATATTACATGCAAGGTATGTTCAGAAACAGCTGTGACCAATTGTA
TTGTCTCGAAGAATTCAGATGCTGTAGCATGAAACAAAAATGTTGAGAGA
CCTAGAGACATTATGGAGAATatagtatttctttttcatcttcaatcttA
TAAGGCGTTTAGGGGAATGAGTATTTAGAATTTCAATAGTCGATTTGTAG
ATCATTTACCAAATATTTTATCACTTGTACTTCACTATGAGCTTTTTTCT
CACAATAGATTTACTGACTTGcattcaaaaaatacaaaaagtttcTTTGA
TACTTTTCACATCCCCGTCAATACTCCaataaaaacacccccttctcaca
gacccactgggaccccttcccacttggccaaaatatcgtccccttTGGAG
Aactatcctccaat Run BLAST on NCBI transcript from alignment at scaffold_456:755076..757154+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066522 ID=TCONS_00066522|Name=TCONS_00066522|organism=Clytia hemisphaerica|type=transcript|length=2079bp|location=Sequence derived from alignment at scaffold_456:755076..757154+ (Clytia hemisphaerica)
caatagaaAGAAAAGATTCTACAGCTTATTCTTCAATAGATGGATAGCac
atttcttatcctctttttccaaaattggtATAAATACACTGAAATTTAAC
TGGATTAATCAATCCAGACTTCACTCTAGATTGCTGAAGAAGTTGTTCTT
TCACCAACTGAAAGTCCATTGATAAGGTAAGACATTtcatttattaattt
tcttaGCAAATCTTCCAATTTTCCAAGCCATAGGTAATCCATAGATGTCC
ATTCGTTTCGTTTGATACTCCTAATTCTAGATatatattttacgtggata
gcccagtaatctaggacttttagacagtctttcgattgttttcacggggt
ccacctCCAGCCGGcttggctatctatgaactgaacagagcattggaagg
agcggggattcgaactaCGAATCCCTAgtttgagacgctgacgcctttta
ccacttggccatcgctccatGGCCTACATAACAGAACTGTTGTACAAGTG
ACTTCAAATCTAAAACAGTGCTCAATATAGTGGTTTGCATAGTGGTATCA
TAAATACATGGAATTCCCGTTAAAGTAAAAAGAAAGTCAGTCTTGTTGTT
GAGATAATTGGGTATAGTACTTAATTCTTTGTGTAAATCGTAATCTCATA
ACATAACATAACTATAAAAGGATACCCACTTCTTTTTTCAGCAACCATGT
TGAGAGTTTTGATAACCATTGCTTTACTTGGCGTTGCTTCTGCAGCTGTT
TCAACCAAGATCGCCAACTGGTGGACTACATTTGATCATGGTGGTTGGTC
CAAATGTGCTGATGGCCATTTCCTGACTGGTATGTGGAGAAGTGCTCGTC
AGCTTGGAGATGAAAGAATCGGCAGAATCGAACAAGGAGATTGTAAAAGT
GCTGACAGTGCATATACCGGAGATTGCAAACAAATGGATTGCTACAAGCT
GAATATCTGGtcaattttcgacaaaaaaggTTGGGCAACATGCAAACCTG
GCTACTTTATCCAATCCATCTTTTCCACCAAAGGAAAAGGCCTTCACAAC
ATCGAGGAATTCCAATGCTGTAAACCAAGATCTAAGAAAGTCAAGCAAGG
TCAATGCTACATCCAAAACGTTTGGAAATCCTTTGACAACAAAGGTTGGT
CTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAGAAACAGCTGT
GACAAATTGTATTGTCTTGAGGAATTCAAATGCTGTAATATGGTCGCTAC
AGACTCGTCTGTCTCAACCAAGATTGCCAACTGGTGGAGTACATTCGACC
ATGGTGGTTGGTCCAAATGTGCTGCTGGACATTTCCTGACTGGTATGTGG
AGAAGTCCTCGTCAGATTGGAGATGAAAGAATCGGCAGAATCGAACAAGG
AGATTGTAAATCTGCACCAAAGAATCTTGGATCTGGACAAGAATGCTACA
AATTGAATATCTGGtcaattttcgacaaaaaaggATGGGCAAATTGCAAA
CCTGGTTATTACATGCAGTCTATCTACTCCACCAAAGGAAAGGGCCTCCA
CCATATTGAGGAATTCCAATGTTGCAGACCAAGCGGAGGGGTGACAGTTG
ATGGTCAATGCTACATCCAAAATGTCTGGAAATCCTTTGACAACAAAGGT
TGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAGAAACAG
CTGTGACCAATTGTATTGTCTCGAAGAATTCAGATGCTGTAGCATGAAAC
AAAAATGTTGAGAGACCTAGAGACATTATGGAGAATatagtatttctttt
tcatcttcaatcttATAAGGCGTTTAGGGGAATGAGTATTTAGAATTTCA
ATAGTCGATTTGTAGATCATTTACCAAATATTTTATCACTTGTACTTCAC
TATGAGCTTTTTTCTCACAATAGATTTACTGACTTGcattcaaaaaatac
aaaaagtttcTTTGATACTTTTCACATCCCCGTCAATACTCCaataaaaa
cacccccttctcacagacccactgggaccccttcccacttggccaaaata
tcgtccccttTGGAGAactatcctccaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066522-exon-scaffold_456-1491911889:755076..755251 | TCONS_00066522-exon-scaffold_456-1491911889:755076..755251 | Clytia hemisphaerica | exon |
| TCONS_00066522-exon-scaffold_456-1510915933:755076..755251 | TCONS_00066522-exon-scaffold_456-1510915933:755076..755251 | Clytia hemisphaerica | exon |
| TCONS_00066522-exon-scaffold_456-1575043694:755076..755251 | TCONS_00066522-exon-scaffold_456-1575043694:755076..755251 | Clytia hemisphaerica | exon |
| TCONS_00066522-exon-scaffold_456-1491911889:755767..757154 | TCONS_00066522-exon-scaffold_456-1491911889:755767..757154 | Clytia hemisphaerica | exon |
| TCONS_00066522-exon-scaffold_456-1510915933:755767..757154 | TCONS_00066522-exon-scaffold_456-1510915933:755767..757154 | Clytia hemisphaerica | exon |
| TCONS_00066522-exon-scaffold_456-1575043694:755767..757154 | TCONS_00066522-exon-scaffold_456-1575043694:755767..757154 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:755076..757154 + |
Blast
The following BLAST results are available for this feature:
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