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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066618 ID=TCONS_00066618|Name=TCONS_00066618|organism=Clytia hemisphaerica|type=transcript|length=1478bp
TCTAGAATTACTTAAAGATCAAGAAAGAAAGTATCACACATTATGCCAGA
ATGGATATACACTTGTGAAGATGTTCTCTGCCAATGATCAAACCGTGCAT
CCTTCTTTTAATACTGATACCCAGAGTCCACAAACCAAAATTCATATATT
CAATCGACCTAATCATAATGtggtattttttaatttcattttcgaATTGT
TACCAACATTATCagacataaaacaaaagattcaaGAGACTCTTCCGATT
CCAAGTGATGATTTACTGCTCTTTGAATATGACGGTCCCTGTAGTATAGA
AAGTTTGGTTCTGGAAGAACCTGTGAAAGCTTTGCATGTGAACAATGAAC
GTAAAtctgttttaaaatttcttttggttATTCGTGGAAACACAACAATT
GGCATTGCAAGAGAACTTTTCTTTGAAACTCTTGATGAAATAGAGATCCA
AGTGCTTGGCTCACATACGCATTTTAAGGTGGAGACGATAAGAAGATTAC
ATTTTATTAAAACAGCAATTGTATCAAAACTTAATATCCCTTTGGAAAAT
CTAGCATTATTAACTAATGATGGTATAGAAGATTATGAAGATTATGAACC
TATTCCTTATGATGCAAACGTGTCTTTAGCAGTTATAGGAGATGTACCAA
CAGAAACTATAAGTTGGTTAACAGAGAATGACATTACACCGATCACAACC
TTCAAGTTGAGGTTTTTGTCAAAGATCGATTCTTTGAATATTACGGAATA
CCAGACAGTCAGTGCCATAAAGGATTACAttgaaattcaatataaaatac
GACGCAGTGATCAGATTATATTATTTAAAGGTACAGAAACGAGGGAATGT
GAGTATGTGTTCAGCTTAATGGTGACTGAGCCTTTTAGTGAATTCGGATT
GGATGTTGTTGTCGTTAAGAAGCCATTTGAAGTGAGATTGATTCGATTGT
ATGCGGATAAATATTCACGAGAAGAATTTCCAATCACAGCTTTAGATTCA
AATACTATTGGCGAAATTAAagagaaaatctcaaatgaaATAGGCTTTCC
AATAAGTCATATAAAACTTTTCAGTGATGCTGAAGGCTTTAAAACACTTG
AGGATGATTCGAAAACAGTTGAGGAATGTGATTTAGGACTATATCCAAAA
ATCTGGATGAAACCAATCGTACACGTGTATGTTACCTTTGCTGGACTTAC
TCCAGAATTAAGAGTTTCTCACTACGAAGTTCTTGAGGAACACTCAACTT
TGGGGGATGTAATAATGAGAATAAGGAATGCTcataatttaaagaaaaat
caacaGATAGAAACTAGAGATGTAATATggggtcatttattagatcCAGC
CGTTTCTTTGGTGTCTGAATCACAAATACGGGCTACTGTTTATCCGTCAC
CTAAGAGATCTTGTAATGTTATGTAATGATGTtttagattttcacaaaaa
aaaaataccccTGTTGCATTTCCAAACC Run BLAST on NCBI protein sequence of TCONS_00066618-protein >TCONS_00066618-protein ID=TCONS_00066618-protein|Name=TCONS_00066618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=474bp
LELLKDQERKYHTLCQNGYTLVKMFSANDQTVHPSFNTDTQSPQTKIHIF
NRPNHNVVFFNFIFELLPTLSDIKQKIQETLPIPSDDLLLFEYDGPCSIE
SLVLEEPVKALHVNNERKSVLKFLLVIRGNTTIGIARELFFETLDEIEIQ
VLGSHTHFKVETIRRLHFIKTAIVSKLNIPLENLALLTNDGIEDYEDYEP
IPYDANVSLAVIGDVPTETISWLTENDITPITTFKLRFLSKIDSLNITEY
QTVSAIKDYIEIQYKIRRSDQIILFKGTETRECEYVFSLMVTEPFSEFGL
DVVVVKKPFEVRLIRLYADKYSREEFPITALDSNTIGEIKEKISNEIGFP
ISHIKLFSDAEGFKTLEDDSKTVEECDLGLYPKIWMKPIVHVYVTFAGLT
PELRVSHYEVLEEHSTLGDVIMRIRNAHNLKKNQQIETRDVIWGHLLDPA
VSLVSESQIRATVYPSPKRSCNVM Run BLAST on NCBI transcript from alignment at scaffold_456:546886..548363 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066618 ID=TCONS_00066618|Name=TCONS_00066618|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at scaffold_456:546886..548363 (Clytia hemisphaerica)
GGTTTGGAAATGCAACAggggtattttttttttgtgaaaatctaaaACAT
CATTACATAACATTACAAGATCTCTTAGGTGACGGATAAACAGTAGCCCG
TATTTGTGATTCAGACACCAAAGAAACGGCTGgatctaataaatgacccc
ATATTACATCTCTAGTTTCTATCtgttgatttttctttaaattatgAGCA
TTCCTTATTCTCATTATTACATCCCCCAAAGTTGAGTGTTCCTCAAGAAC
TTCGTAGTGAGAAACTCTTAATTCTGGAGTAAGTCCAGCAAAGGTAACAT
ACACGTGTACGATTGGTTTCATCCAGATTTTTGGATATAGTCCTAAATCA
CATTCCTCAACTGTTTTCGAATCATCCTCAAGTGTTTTAAAGCCTTCAGC
ATCACTGAAAAGTTTTATATGACTTATTGGAAAGCCTATttcatttgaga
ttttctctTTAATTTCGCCAATAGTATTTGAATCTAAAGCTGTGATTGGA
AATTCTTCTCGTGAATATTTATCCGCATACAATCGAATCAATCTCACTTC
AAATGGCTTCTTAACGACAACAACATCCAATCCGAATTCACTAAAAGGCT
CAGTCACCATTAAGCTGAACACATACTCACATTCCCTCGTTTCTGTACCT
TTAAATAATATAATCTGATCACTGCGTCgtattttatattgaatttcaaT
GTAATCCTTTATGGCACTGACTGTCTGGTATTCCGTAATATTCAAAGAAT
CGATCTTTGACAAAAACCTCAACTTGAAGGTTGTGATCGGTGTAATGTCA
TTCTCTGTTAACCAACTTATAGTTTCTGTTGGTACATCTCCTATAACTGC
TAAAGACACGTTTGCATCATAAGGAATAGGTTCATAATCTTCATAATCTT
CTATACCATCATTAGTTAATAATGCTAGATTTTCCAAAGGGATATTAAGT
TTTGATACAATTGCTGTTTTAATAAAATGTAATCTTCTTATCGTCTCCAC
CTTAAAATGCGTATGTGAGCCAAGCACTTGGATCTCTATTTCATCAAGAG
TTTCAAAGAAAAGTTCTCTTGCAATGCCAATTGTTGTGTTTCCACGAATa
accaaaagaaattttaaaacagaTTTACGTTCATTGTTCACATGCAAAGC
TTTCACAGGTTCTTCCAGAACCAAACTTTCTATACTACAGGGACCGTCAT
ATTCAAAGAGCAGTAAATCATCACTTGGAATCGGAAGAGTCTCttgaatc
ttttgttttatgtctGATAATGTTGGTAACAATtcgaaaatgaaattaaa
aaataccaCATTATGATTAGGTCGATTGAATATATGAATTTTGGTTTGTG
GACTCTGGGTATCAGTATTAAAAGAAGGATGCACGGTTTGATCATTGGCA
GAGAACATCTTCACAAGTGTATATCCATTCTGGCATAATGTGTGATACTT
TCTTTCTTGATCTTTAAGTAATTCTAGA Coding sequence (CDS) from alignment at scaffold_456:546886..548363 >TCONS_00066618 ID=TCONS_00066618|Name=TCONS_00066618|organism=Clytia hemisphaerica|type=CDS|length=1425bp|location=Sequence derived from alignment at scaffold_456:546886..548363 (Clytia hemisphaerica)
TTACATAACATTACAAGATCTCTTAGGTGACGGATAAACAGTAGCCCGTA
TTTGTGATTCAGACACCAAAGAAACGGCTGgatctaataaatgaccccAT
ATTACATCTCTAGTTTCTATCtgttgatttttctttaaattatgAGCATT
CCTTATTCTCATTATTACATCCCCCAAAGTTGAGTGTTCCTCAAGAACTT
CGTAGTGAGAAACTCTTAATTCTGGAGTAAGTCCAGCAAAGGTAACATAC
ACGTGTACGATTGGTTTCATCCAGATTTTTGGATATAGTCCTAAATCACA
TTCCTCAACTGTTTTCGAATCATCCTCAAGTGTTTTAAAGCCTTCAGCAT
CACTGAAAAGTTTTATATGACTTATTGGAAAGCCTATttcatttgagatt
ttctctTTAATTTCGCCAATAGTATTTGAATCTAAAGCTGTGATTGGAAA
TTCTTCTCGTGAATATTTATCCGCATACAATCGAATCAATCTCACTTCAA
ATGGCTTCTTAACGACAACAACATCCAATCCGAATTCACTAAAAGGCTCA
GTCACCATTAAGCTGAACACATACTCACATTCCCTCGTTTCTGTACCTTT
AAATAATATAATCTGATCACTGCGTCgtattttatattgaatttcaaTGT
AATCCTTTATGGCACTGACTGTCTGGTATTCCGTAATATTCAAAGAATCG
ATCTTTGACAAAAACCTCAACTTGAAGGTTGTGATCGGTGTAATGTCATT
CTCTGTTAACCAACTTATAGTTTCTGTTGGTACATCTCCTATAACTGCTA
AAGACACGTTTGCATCATAAGGAATAGGTTCATAATCTTCATAATCTTCT
ATACCATCATTAGTTAATAATGCTAGATTTTCCAAAGGGATATTAAGTTT
TGATACAATTGCTGTTTTAATAAAATGTAATCTTCTTATCGTCTCCACCT
TAAAATGCGTATGTGAGCCAAGCACTTGGATCTCTATTTCATCAAGAGTT
TCAAAGAAAAGTTCTCTTGCAATGCCAATTGTTGTGTTTCCACGAATaac
caaaagaaattttaaaacagaTTTACGTTCATTGTTCACATGCAAAGCTT
TCACAGGTTCTTCCAGAACCAAACTTTCTATACTACAGGGACCGTCATAT
TCAAAGAGCAGTAAATCATCACTTGGAATCGGAAGAGTCTCttgaatctt
ttgttttatgtctGATAATGTTGGTAACAATtcgaaaatgaaattaaaaa
ataccaCATTATGATTAGGTCGATTGAATATATGAATTTTGGTTTGTGGA
CTCTGGGTATCAGTATTAAAAGAAGGATGCACGGTTTGATCATTGGCAGA
GAACATCTTCACAAGTGTATATCCATTCTGGCATAATGTGTGATACTTTC
TTTCTTGATCTTTAAGTAATTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066618-exon-scaffold_456-1491911889:546886..548363 | TCONS_00066618-exon-scaffold_456-1491911889:546886..548363 | Clytia hemisphaerica | exon |
| TCONS_00066618-exon-scaffold_456-1510915933:546886..548363 | TCONS_00066618-exon-scaffold_456-1510915933:546886..548363 | Clytia hemisphaerica | exon |
| TCONS_00066618-exon-scaffold_456-1575043694:546886..548363 | TCONS_00066618-exon-scaffold_456-1575043694:546886..548363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:546886..548363 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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