TCONS_00006708 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006708
Unique NameTCONS_00006708
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006708 ID=TCONS_00006708|Name=TCONS_00006708|organism=Clytia hemisphaerica|type=transcript|length=338bp
GTAGGGTCAAATTTTAGGCATTTTTCACGGTTTTCGGTTCATTTATTGAG
TATCTTTAAGGTTTCTCGGGGCTCCATTTGATTTTGACTGGTAGTACAAT
ACTCTTGAACGAGGTGTGTATAAAAGATTATTTCGTAGTATTCTCGAGAT
TACGAGAGAAACGAGAGAAGCAAGCAcgcaattttttgggaaatattGCT
TGTATAGAAAGAGACTTCGGGAAAACACAAATCGAACCACAAGacaaaat
gctctttttcaaggttttcaaggaattCCTTTATTTAGATCATGTACACT
TTTCAAGGTTGTTTGATCTATTTTAAAGTTTCTTCATA
Run BLAST on NCBI

transcript from alignment at sc0000069:305394..305731

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006708 ID=TCONS_00006708|Name=TCONS_00006708|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at sc0000069:305394..305731 (Clytia hemisphaerica)
TATGAAGAAACTTTAAAATAGATCAAACAACCTTGAAAAGTGTACATGAT
CTAAATAAAGGaattccttgaaaaccttgaaaaagagcattttgtCTTGT
GGTTCGATTTGTGTTTTCCCGAAGTCTCTTTCTATACAAGCaatatttcc
caaaaaattgcgTGCTTGCTTCTCTCGTTTCTCTCGTAATCTCGAGAATA
CTACGAAATAATCTTTTATACACACCTCGTTCAAGAGTATTGTACTACCA
GTCAAAATCAAATGGAGCCCCGAGAAACCTTAAAGATACTCAATAAATGA
ACCGAAAACCGTGAAAAATGCCTAAAATTTGACCCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003754XLOC_003754Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006708-exon-sc0000069-1491911889:305394..305731TCONS_00006708-exon-sc0000069-1491911889:305394..305731Clytia hemisphaericaexon
TCONS_00006708-exon-sc0000069-1510915933:305394..305731TCONS_00006708-exon-sc0000069-1510915933:305394..305731Clytia hemisphaericaexon
TCONS_00006708-exon-sc0000069-1575043694:305394..305731TCONS_00006708-exon-sc0000069-1575043694:305394..305731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069supercontigsc0000069:305394..305731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.28969	1.61752	2.26083	2.34859	8.78509	7.32682	10.58	12.7776	3.77017	0.86119	6.03787	3.21106	2.88518	2.84925	1.47214	1.67589	1.32955	1.90449	1.93027	2.35666	6.02407	4.04248	0	1.14673	3.45595	3.68937	2.49338	3.96781	1.43469	3.61709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006708 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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