TCONS_00066355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066355
Unique NameTCONS_00066355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066355 ID=TCONS_00066355|Name=TCONS_00066355|organism=Clytia hemisphaerica|type=transcript|length=356bp
GTTGGTTTCCACTTCATGGTCTAGCAggataaaatttcaaactttgtaAT
CATAGTTCATCAACACATAAActaaaaaacaccaaatttggTCCCACTTT
ACTGCATTTGAAGTTAGCATTTCGCAACCCACCGTCAGTCAAGGAAAGGC
CGCACATCAGATGTAGTCAATTTTCTAACAAAACTGTTCGTAAAGGAAAC
TGTTTGGCACTTAAGCATTCGTATGATGAGGATATTTTATCCATCCATAT
TTAACCCTATTTTAGGGGGATGAAAGCTACTATGTGGATGATTGAATAAC
CCTAAAGTGGCTATTATTCTGATATGGAAGAAATGATTGTTTTTAATAGT
TGATCC
Run BLAST on NCBI

transcript from alignment at scaffold_452:11432..11787

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066355 ID=TCONS_00066355|Name=TCONS_00066355|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at scaffold_452:11432..11787 (Clytia hemisphaerica)
GGATCAACTATTAAAAACAATCATTTCTTCCATATCAGAATAATAGCCAC
TTTAGGGTTATTCAATCATCCACATAGTAGCTTTCATCCCCCTAAAATAG
GGTTAAATATGGATGGATAAAATATCCTCATCATACGAATGCTTAAGTGC
CAAACAGTTTCCTTTACGAACAGTTTTGTTAGAAAATTGACTACATCTGA
TGTGCGGCCTTTCCTTGACTGACGGTGGGTTGCGAAATGCTAACTTCAAA
TGCAGTAAAGTGGGAccaaatttggtgttttttagTTTATGTGTTGATGA
ACTATGATtacaaagtttgaaattttatccTGCTAGACCATGAAGTGGAA
ACCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041528XLOC_041528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066355-exon-scaffold_452-1491911889:11432..11787TCONS_00066355-exon-scaffold_452-1491911889:11432..11787Clytia hemisphaericaexon
TCONS_00066355-exon-scaffold_452-1510915933:11432..11787TCONS_00066355-exon-scaffold_452-1510915933:11432..11787Clytia hemisphaericaexon
TCONS_00066355-exon-scaffold_452-1575043694:11432..11787TCONS_00066355-exon-scaffold_452-1575043694:11432..11787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_452supercontigscaffold_452:11432..11787 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.96538	1.17675	4.09895	5.8816	0.976402	1.80032	0	1.16195	2.6439	1.00766	1.22257	2.57175	0.963066	0.833461	0.685218	1.61776	1.08706	0.557101	0.769665	0.805399	0.933384	3.41454	0.830164	0.25158	0	0.693779	1.32373	0.35318	0.267874	0.272921
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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