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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066205 ID=TCONS_00066205|Name=TCONS_00066205|organism=Clytia hemisphaerica|type=transcript|length=835bp
ATACTACTGTATGATCATTTTGTGAGCTTGAAAAGTGAACAAAACAAGAA
CAATAAACAAGGATAAAGGAAAGATAATGGATTTGTTTGAAGACTTGGAT
GAAAACCGATGGGAAAATAAAGGCCACCCACCTCTCGATCCTTCCAGCAT
TGAGGGTTACACATCATATATCGTATTTCAACGGCAAATTGTAGAAGACG
CAAAAACTATGATATTATATTTGAAGACAGAACAAGGAAGACCGTTGCAA
GTCAAACTTTCCAATTTCAAACCGGACAGAAATCCAATGAAAAGTGTCCG
AAATTGTTGTTTAAAAATAcgtaaaaatgaaattgttggtATCATGATGG
ACAGAGATTGGGTGGAAGCAAAATGAAGGACTGAATAGTAGTTGAATGAA
TACGACTTACTGGACGAGTGATTACGACTGAATTGATATTCAACTTTCTT
TGTATATATGTTTTTTCTATATTTAATTCcgtgaaagaaaatgaagaatt
tctATATTTGAGCGATGGCACGACTCACCattagacacccctgtctcaca
gccccggtggaacttttttttctcagtgggaGCAAAAACTTCCTATTGAA
ATTCCTTTtctcaaaggttaaaaaattcagtgcaatttttaaacatagaA
TTTCGAATGCAGTTGAAAttctaaggtattttcccaccggagaTGAAATC
TTTGTCGATATTTCCAGTGGAGCTGGgctcccagtgggtctgtgacagaG
GGATATAATTAGAAACAACAATCGGACCCGGTGGAACAACcgttaaagtg
gggaggctgaaggctcaaaatgacaTAAAAATTGC Run BLAST on NCBI transcript from alignment at scaffold_451:1378488..1380866+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066205 ID=TCONS_00066205|Name=TCONS_00066205|organism=Clytia hemisphaerica|type=transcript|length=2379bp|location=Sequence derived from alignment at scaffold_451:1378488..1380866+ (Clytia hemisphaerica)
ATACTACTGTATGATCATTTTGTGAGCTGTAAgttatttaagcaaaaaaa
ggtttcttgttgaaaacaaatttttcgttTCAAATATTGAGCATTTCTTA
CTTGGTTGCGACTTGCTTGATAGCTGTTTGAAGGATTCAGTTAGCTTGGA
AGGTTCGCTTATTTTTGAGCCCCTTCCCAGCAGTTTGTGCGATAGCTTGA
TCAGGaatttgattctaaaaaagattttaggcGTAATGCACGAATTTTGG
GTGTTTTCATGTGTGTGATTTTGTCGATTTTCATTTGATCGTGATCAAAG
AAAGAGAGAGATAGAAACTCGATGCGATAGCTTGACTAGAAGGTAGCCTC
TGCCGGAGGGGAGGACTCCTTTAGTTTCGAGtcctcgggtaagttatggc
atgtctcaaaaacctgaaaattaccataatttttgaaggccattagctgg
cagaaaatggggaaaccaatgatttgctacgaagggtatcatgatgaagt
ttcgctttaggggtgttacctaattgtttacgcccttattttcgcgaaaa
accgcaaaaactaaaaaatgatgacgtcagcaaaacttgtttttcaaata
actccagtttggctaaagatagaagcatgaaatttggactgaagttgcat
atcattaaaaggatcattttgcaaaaaagtttttttgaaattttgctgac
atcagcactttattgcaaaatttcgtattttgttgatttctgctgacgaa
agcaaaatttcgaaaaaaaaaattttgcaaaatgattcttttaatgatat
tcaacgttggtccaaatttcatgtttctaccaTTATCCAAACTGGAGATA
TTCAAGAAACAAGTTTTGCTAACGTCAGCACTGAGTCGTTACGCAAATTG
CCTGACGGGTCCGTGCAGTGGTTAAAAGTATGTTTTCAAGATAGCagaaa
tacactgtaagggtgaaaattttagaaaatcaagaaaatttctaattttt
gctcgaaaactTCGATTTTTTAGCACtgagaaagttgaaaatttaagaaa
aaatttactGTACCGATTACTGTACTGATGGTGCGATTCTAAAAAGCCGC
GCATATCTTCAGTCTAAAGCAATTACAATTTTGACTCGTGTTTCTTATGT
AGTGAAAAGTGAACAAAACAAGAACAATAAACAAGGATAAAGGAAAGATA
ATGGATTTGTTTGAAGACTTGGATGAAAACCGATGGGAAAATAAAGGCCA
CCCACCTCTCGATCCTTCCAGCATTGGTAAGATTTTCCATTCAAAATCAT
GattattaaaaagtgaaatggaCTATTTAAGAACCCATAACCCCTGTCAG
AGCTCTTTTATCTACTTCCCAAAGCGAAATAGACTATTTAAGAGCCAATG
ACCCCTTGTTAGACATTGGTAAGCTACTTAATCTCTTATAATTGTTATTT
GGTCATTGAAAAGCTTAAAGGGTTCACTCGAAAGTGAAATAGAAAATATA
AGAGCAAATGACCCCTTGTTAAACATTAGTAAGCTTTTTAATCTCTTTTA
AAGCGTCATTTGGTTATTGAAAAAGTTGAGGGGTTCGATTTTTGTGGACA
CACTGTGTATGCAGCATAAGCTTAAAAATATTCTGAAATAGAACCTCTCT
CTCCTCTCTCACTGACCCTTTATAAACACTATGTATCTCTTTTCAGAGGG
TTACACATCATATATCGTATTTCAACGGCAAATTGTAGAAGACGCAAAAA
CTATGATATTATATTTGAAGACAGAACAAGGAAGACCGTTGCAAGTCAAA
CTTTCCAATTTCAAACCGGACAGAAATCCAATGAAAAGTGTCCGAAATTG
TTGTTTAAAAATAcgtaaaaatgaaattgttggtATCATGATGGACAGAG
ATTGGGTGGAAGCAAAATGAAGGACTGAATAGTAGTTGAATGAATACGAC
TTACTGGACGAGTGATTACGACTGAATTGATATTCAACTTTCTTTGTATA
TATGTTTTTTCTATATTTAATTCcgtgaaagaaaatgaagaatttctATA
TTTGAGCGATGGCACGACTCACCattagacacccctgtctcacagccccg
gtggaacttttttttctcagtgggaGCAAAAACTTCCTATTGAAATTCCT
TTtctcaaaggttaaaaaattcagtgcaatttttaaacatagaATTTCGA
ATGCAGTTGAAAttctaaggtattttcccaccggagaTGAAATCTTTGTC
GATATTTCCAGTGGAGCTGGgctcccagtgggtctgtgacagaGGGATAT
AATTAGAAACAACAATCGGACCCGGTGGAACAACcgttaaagtggggagg
ctgaaggctcaaaatgacaTAAAAATTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066205-exon-scaffold_451-1491911889:1378488..1378515 | TCONS_00066205-exon-scaffold_451-1491911889:1378488..1378515 | Clytia hemisphaerica | exon |
| TCONS_00066205-exon-scaffold_451-1510915933:1378488..1378515 | TCONS_00066205-exon-scaffold_451-1510915933:1378488..1378515 | Clytia hemisphaerica | exon |
| TCONS_00066205-exon-scaffold_451-1575043694:1378488..1378515 | TCONS_00066205-exon-scaffold_451-1575043694:1378488..1378515 | Clytia hemisphaerica | exon |
| TCONS_00066205-exon-scaffold_451-1491911889:1379640..1379763 | TCONS_00066205-exon-scaffold_451-1491911889:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066205-exon-scaffold_451-1510915933:1379640..1379763 | TCONS_00066205-exon-scaffold_451-1510915933:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066205-exon-scaffold_451-1575043694:1379640..1379763 | TCONS_00066205-exon-scaffold_451-1575043694:1379640..1379763 | Clytia hemisphaerica | exon |
| TCONS_00066205-exon-scaffold_451-1491911889:1380184..1380866 | TCONS_00066205-exon-scaffold_451-1491911889:1380184..1380866 | Clytia hemisphaerica | exon |
| TCONS_00066205-exon-scaffold_451-1510915933:1380184..1380866 | TCONS_00066205-exon-scaffold_451-1510915933:1380184..1380866 | Clytia hemisphaerica | exon |
| TCONS_00066205-exon-scaffold_451-1575043694:1380184..1380866 | TCONS_00066205-exon-scaffold_451-1575043694:1380184..1380866 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:1378488..1380866 + |
Blast
The following BLAST results are available for this feature:
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