TCONS_00066253 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066253
Unique NameTCONS_00066253
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066253 ID=TCONS_00066253|Name=TCONS_00066253|organism=Clytia hemisphaerica|type=transcript|length=350bp
CCATCCTTCATCACCATGAGATTGTCATCGATTCTTTTGATCGTTTTGTT
TGCAATCAATTTCTATGATATTCATGCTGCCTCTGGAAATGTCATCAAAA
aatgCCGTGATGTGATGGGCGCAGGGTATTGTGGGATACCAGGGATGTGT
GGCGTTTACAAGGGCGCTTGTGCAAAGACTTGTGGCGGATGTGGTGGGCG
GAAGAGGATTGTTGGTGAAAATGAAGAGGGGGATATGAACGACCAAAATT
ACAATAtgtTGAACTATTGGCGAAGACGTGATTTACTTCGACAAAAAGAT
TTCTTACAACAATTGCGTGAAAATGACGAAAAAACTTTATACAAAATGTA
Run BLAST on NCBI

protein sequence of TCONS_00066253-protein

>TCONS_00066253-protein ID=TCONS_00066253-protein|Name=TCONS_00066253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
PSFITMRLSSILLIVLFAINFYDIHAASGNVIKKCRDVMGAGYCGIPGMC
GVYKGACAKTCGGCGGRKRIVGENEEGDMNDQNYNMLNYWRRRDLLRQKD
FLQQLRENDEKTLYKM
Run BLAST on NCBI

transcript from alignment at scaffold_451:1034576..1038237-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066253 ID=TCONS_00066253|Name=TCONS_00066253|organism=Clytia hemisphaerica|type=transcript|length=3662bp|location=Sequence derived from alignment at scaffold_451:1034576..1038237- (Clytia hemisphaerica)
CCATCCTTCATCACCATGAGATTGTCATCGATTCTTTTGATCGTTTTGTT
TGCAATCAATTTCTATGATATTCATGCTGCCTCTGGAAATGTCATCAAAA
GTAAGAACGAAACCATAACCCTGTATAACTGAGTAAGGGAATAAAAACAC
CCCTGTTTCACTAGCCTGACGAGAAAAAAACAGTCTTGTCTCATTGACTT
GGTGATCGCCAAAAGAACACCCCTATCTTGCTGACTTGATGAAAGACAAA
AAATAGCCCCGTCTTATTGACTTGATGATAGACTAAAAAACACCTCTGTC
TCATAAACTTGATGAGAGAAAAGAACAGAGCTGTCTAATTGACGGGGATA
TAGAATTTAATTTAAGATTTTTTTGTATCGCTAATATAAGCCAAGCAAAA
GTGCTACTTGTATTGTGACCAAAGAAGTATACGCCCGAAGAGCTAGAATC
GAATCTTTAACCTTTCTCAAGCAAGAAAAAGTGAAGCCTTAAATATGCGC
CGTATTTTTGATGACGGATTGAACCTAGCAATGCCTTTGTTTTCGAGTGA
TATATTTTTCGAAATTTAGCTGTAAATTTTAGTTTCAATCTGTTATTTGT
GTAAAAACCATATGAACCGTGCTAGGCCGCGCAATTTTGGTAGGATTTGG
TAGGCTTCAAATCCTACCAAGGAGATTCGATTCTAGTCCTTCGGGCTTAT
ACTTCATTGATTTTGACGCACCGGAACAAGGACCTCGGGAATTCAATTAA
TTTAATGTAGAAATACACCTTTCCCGTAATTCAAACTTCTCAGAAATTTG
CCGGGAAAATATGCACTCCGCCGTTCTGTATAAAATTGTTTGGGAGGTAA
ACGAACGGGTTTTTGCTTGTGAGGGGTTAGGGAAAGTAGGTATTTAGCTT
CTAGCTTTTGATTGCGATCTCTGTTTGGCAAAATATTTTCAGGGTGGTAT
AATAAATAGAAAGAATACACGTTTTTTTTTAGGAAACTAGTTCTACCAAG
CAGCCTCAATGTTTCTTAAGAAATTGGACTTTTGAGCCTTACATGTTTCT
TACATGTTTCTAAACTTTTTGACATAATCAGCCTCATGGAAGGCTGGATT
GGAAGGTTCTTAAAAAAAACGAATTAAAAAATGTTATATTCTCATTCTCA
GCCTCAGCATGTTTCTTAGTTTTTAGGCATTCTGAGCCTCATGTTTCTTA
AAAATGTGTTTCTTAAAAAAACAAAACGTTATACCAAGATCTGAGAGGGT
TCTGTTCAACAGAACTTAAGGGCTCTGACCATAGTGAATTTTTAACATTT
GCCATATACAAAATATGAATTTCTGCCTGATGTAGCGGACAAAACTTTGA
CATGTTATACATTTTCCGTGAGTCTGAAAATTAAAAATTGCAATGAAATA
ATTTGATGAAGAAGAAGATGAAGACTTTTGCGAAGAAGAGCATTTCAACT
TTGAAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGAAAATATTTTTGC
GGTAGATAGTGTATCCTTTGTCGAACTAAAAATTTTTTTCCTGAAAATAG
TGCTTTTTGACCAATTTTCCATCCCGATTTTTCATAGAAAAACAACCATA
ACTTTTGATGCATTAATTTAGAAAATTTTTCCAAAAAATTAAAACAGTTT
AATTCTTTGTGGACAGTTTGAAAAAACTTTGAAACAAAAAGGTTAATTAC
CCATTAAAACTTAGCACTTTTTATAAAAGAAGGTGATGCAACATATTATT
AATGTCTTTTTTAAAGTTCCTAACGTCATTTTTGCAATTAAGTTCTTAAA
TACTCTTAAGGGATTTGATCAAAAAGCAATTTATAAAGGCAATTCTTTGT
TAAAAGTGTTAAAGAATCTAAAACATAACTTTTATATTCAGATACTAAAA
TCAATTTTCCGACTATGATGGTCAGAGCCCTTAAGAAAAGCTCAAAAAAC
TAACTTTCCCCAAGGAAACGCAGGCAATAAAAGTGTTGTTTACCTCAACC
AAAAACCAAACGGTGGAGAGCAACAAAACAACGCGCGCGCATCTGTTTTG
CAAATAACGAGAAAGATGTATACAGATAAATCACTTATGAACGTTATGAA
CCAATGAACCTAGACGTTCCCCGCGTATTTTTCTACGCAATCAAACAGCA
TAACATTCCCTGTTATTTGGTTGTTAGTGAGGTACTGGCTATTACCCAAT
AAGAGTTTATTAAAAATATTCCATTTCATCCTATCTTAAATTTTTTTCAA
ATCTGCTATTCATACAATCAAGGTCATAATATTTGAGGAAAAAGGGAAAT
TCACCGTGAAGTTTTGAAACCACAATCGGTTTGCGAATGCTCTAAAGTAG
GTTGGAAGGGTAGATTTTTATTTCTGAGTTTTAACGCTAGACTTAAGACT
TCTAAAGTCCAAAAATAGTCCAATAAGGATCAGAATATAGCCTGGAAGTC
TGCCAACGCCTCCCAAATTGAAATATTCGATTAAATTAAAGAGATAACCC
AAAATCGACTTTCTCTCCGGAACTTTAAATCTTGAAAAACGTTAAAATAA
CCGAAATTTTCAATATATTTCAACCATGATTGTAGAATGCCGTGATGTGA
TGGGCGCAGGGTATTGTGGGATACCAGGGATGTGTGGCGTTTACAAGGGC
GCTTGTGCAAAGACTTGTGGCGGATGTGGTGGGCGGAAGAGGATTGTTGG
TGAAAATGAAGAGGGGGATATGAACGACCAAAATTACAATAGTAAGTGAA
ATTATCAAGCAAATGAAAGCATACCCCGCTGGAACACAACGTTGTTTTAA
CGTTTGTCTAACGTTCACAGCGTCCATATAACCTTAGATGAACGTTGAAA
CAACGTTGTCGTGTGCCAGTTGGGTATCTTGCATGTTCACACCCCTGTGT
CGCAGACCAGCTGGAACCCAGCCCCACTGGAAAATTTAGCGAAAATTTAA
TCCCCAGTGGGAAAATTTTGCTGGTCCCCGGTGGGGAAATACTCTTGAAT
TTCAGCCCCACTGGAAATTCAATATTTAAAAATTGTACTCCAAAACCAAC
CCCACTGGATTTTTAAACCTTGAAACAATAGAATTGATATCCCCACTGGG
ATTTCAATAGGAATTTTTATCCCCACTGAGGAAAAGAGTTCGGCCTGGGC
TTTGAGACAAAGGTTTGTATATCCTGGAGAGTCTTCATAGCGCGAAAACG
CACGAGGAACTAGGATTTGTTCGACTAATGGGAAATTCAAATCAAACATA
GAGATTTCTTTCTATATGGGTTTCTTCTTCCAGACAACAAGATTTTCATG
TTGTAAAGATTCGAGTTATGGAGATTTTATATGGCTAAATGGTAAAATTT
TGATAAGGGAAATTGTACTTCTGAAAACCCAAAGATAAGGTAAATATTGG
CTAAAATCAGGATTTTTGGAGCAAAATAAGGCCACTTCCTCTTTGCTAAC
TGAAAATTTTCGAAAAATTAACATGAAATTAACAAGCGTTTATTTGGCAC
CTAAGAGAAGTTAGCCATGCAGCACTACTTACCAAGACTCATGCCAAAAT
TTTTTTTTCATTTTTCAGTGTTGAACTATTGGCGAAGACGTGATTTACTT
CGACAAAAAGATTTCTTACAACAATTGCGTGAAAATGACGAAAAAACTTT
ATACAAAATGTA

Coding sequence (CDS) from alignment at scaffold_451:1034576..1038237-

>TCONS_00066253 ID=TCONS_00066253|Name=TCONS_00066253|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_451:1034576..1038237- (Clytia hemisphaerica)
TGTTGAACTATTGGCGAAGACGTGATTTACTTCGACAAAAAGATTTCTTA
CAACAATTGCGTGAAAATGACGAAAAAACTTTATACAAAATGAATGCCGT
GATGTGATGGGCGCAGGGTATTGTGGGATACCAGGGATGTGTGGCGTTTA
CAAGGGCGCTTGTGCAAAGACTTGTGGCGGATGTGGTGGGCGGAAGAGGA
TTGTTGGTGAAAATGAAGAGGGGGATATGAACGACCAAAATTACAATACC
ATCCTTCATCACCATGAGATTGTCATCGATTCTTTTGATCGTTTTGTTTG
CAATCAATTTCTATGATATTCATGCTGCCTCTGGAAATGTCATCAAAATG
TTGAACTATTGGCGAAGACGTGATTTACTTCGACAAAAAGATTTCTTACA
ACAATTGCGTGAAAATGACGAAAAAACTTTATACAAAATGAATGCCGTGA
TGTGATGGGCGCAGGGTATTGTGGGATACCAGGGATGTGTGGCGTTTACA
AGGGCGCTTGTGCAAAGACTTGTGGCGGATGTGGTGGGCGGAAGAGGATT
GTTGGTGAAAATGAAGAGGGGGATATGAACGACCAAAATTACAATACCAT
CCTTCATCACCATGAGATTGTCATCGATTCTTTTGATCGTTTTGTTTGCA
ATCAATTTCTATGATATTCATGCTGCCTCTGGAAATGTCATCAAAATGTT
GAACTATTGGCGAAGACGTGATTTACTTCGACAAAAAGATTTCTTACAAC
AATTGCGTGAAAATGACGAAAAAACTTTATACAAAATGAATGCCGTGATG
TGATGGGCGCAGGGTATTGTGGGATACCAGGGATGTGTGGCGTTTACAAG
GGCGCTTGTGCAAAGACTTGTGGCGGATGTGGTGGGCGGAAGAGGATTGT
TGGTGAAAATGAAGAGGGGGATATGAACGACCAAAATTACAATACCATCC
TTCATCACCATGAGATTGTCATCGATTCTTTTGATCGTTTTGTTTGCAAT
CAATTTCTATGATATTCATGCTGCCTCTGGAAATGTCATCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041458XLOC_041458Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066253-proteinTCONS_00066253-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066253-exon-scaffold_451-1575043694:1038138..1038237TCONS_00066253-exon-scaffold_451-1575043694:1038138..1038237Clytia hemisphaericaexon
TCONS_00066253-exon-scaffold_451-1575043694:1035497..1035652TCONS_00066253-exon-scaffold_451-1575043694:1035497..1035652Clytia hemisphaericaexon
TCONS_00066253-exon-scaffold_451-1575043694:1034576..1034669TCONS_00066253-exon-scaffold_451-1575043694:1034576..1034669Clytia hemisphaericaexon
TCONS_00066253-exon-scaffold_451-1510915933:1038138..1038237TCONS_00066253-exon-scaffold_451-1510915933:1038138..1038237Clytia hemisphaericaexon
TCONS_00066253-exon-scaffold_451-1510915933:1035497..1035652TCONS_00066253-exon-scaffold_451-1510915933:1035497..1035652Clytia hemisphaericaexon
TCONS_00066253-exon-scaffold_451-1510915933:1034576..1034669TCONS_00066253-exon-scaffold_451-1510915933:1034576..1034669Clytia hemisphaericaexon
TCONS_00066253-exon-scaffold_451-1491911889:1038138..1038237TCONS_00066253-exon-scaffold_451-1491911889:1038138..1038237Clytia hemisphaericaexon
TCONS_00066253-exon-scaffold_451-1491911889:1035497..1035652TCONS_00066253-exon-scaffold_451-1491911889:1035497..1035652Clytia hemisphaericaexon
TCONS_00066253-exon-scaffold_451-1491911889:1034576..1034669TCONS_00066253-exon-scaffold_451-1491911889:1034576..1034669Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:1034576..1038237 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.251615	0.245364	0.284891	0	0	0.268133	0	0.302848	0	1.05054	1.2746	0	0.502023	0.173785	0.28575	0.459981	4.1555	7.35689	1.33736	0.559781	12.4071	18.1552	2.01948	4.98342	7.02384	10.1262	0.690028	0	0.558546	1.70721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066253 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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