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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066131 ID=TCONS_00066131|Name=TCONS_00066131|organism=Clytia hemisphaerica|type=transcript|length=2353bp
CAGACCACACCAGAGgtaaaaaagagaATTCGAACGTGATTTAAGAATGT
TGGCAGATCGATCAGACGCAGATTTGTCAACAAGACAAAAGATTATCGAT
CAACACAATCAAACACTTGAAACAAAATTACAACGGATTCGAATGTTGTT
ATTACAACTTGAAGAAACAAACACATCATTTGCCACCTACTGAAGACAtc
tttcgaccgtagccgccaatttctgcgcgggcatttttttgtccgtttta
ccaccctaaaaccgtccaaGTGTTTTTTTGCgcgcctaaagacaatagaa
aaaactgTAAAGAAATAAGAATTGGATTGAGCTTAGGGTTGATaaaaagt
ggcacgcgcctgaccacgcgactacggtcgaaatgATGTATTAATATCAA
TTCTGCATTTCCTCAATGTATGTCTATCAATCCGGATAAACGTTATCAAG
AAGCCGGTTGATGTGAAGGCCAAGTGACTCAGGCGACTCAAAACAGTAGA
CAATGGAATATTTCTTCcgaaatgaacttgaattgacaaattTCAGATTG
TCATAAAGCATTGCTCCTATAAAAACAGAAATAGTACCACAGAGAGTGAC
AGGCTAATGGAAGGACCGATGCATAGCCAACAATAAGTAATCCAGCGGTG
ATTTAGAAAGACATTTAGAAAGATTGTCCGACTAATTCGAAGCTAAACTG
aataaaaactattaaaatgTGGATCAATTTTCGGATTCCTATAGGCACTT
AAAATAAATGATGACTGAGAAACCTGGAATGGTGACTAGTTAGAACTTGG
TTAATGGTTTATGTTTGATTCTGGTTAAccatttattttttgataactCA
AAAAGGCTTCAAggattaaccctttaagtgccacggtccttTCTTCAATA
GTTATGGTGAAATTTatataagaaaagtaaaaaacataAAGATCATAAAA
ATACACCTGTCTTcgttcaaaaaagttgaatgaaaGGGACTAGGTCGGAG
TTTTCCAGGGTTGGATGGACGTCAAATTTTTGTCATTGTATTGATACACT
CATACTTACGCTTATTTTGACGGCATTTGATCCCGANGATTTAGAAAGAC
ATTTAGAAAGACTGTCCGGCTGATTGGAAACTTAACTGAAGTAAAAACTA
TCGAAATGTGGCTCAATTTCTCAATCCCAATGAGCACATAATATAAATAA
TGATTTTTAGAACCTGGAATGGTGACTAATTAATGGTTTATGGTTTAAta
ttctggaaaaaaaatttacacatagttaaccatatattttttaataactC
AAAAAGGATCTAAGGATTAaacctttaagtgccacggtccttTTTTCAAT
AGTTATGGTGAAATTTatataagaaaagtaaaaaacataAAGATCATAAA
AATACACCTGTCTTCgttcgaaaaagttgaatgaaAGGGACTAGGTCAGA
GTTTGCCAGGGTTGAATGGACGTCAAATTTTTGAATCATTGTACTGATAC
ACTCATACTTACGCTTGTTTTGACGGCATTTGATCCCGATAAACTTGAGC
CTAATCCcttttaaaagtgttaaagcTGATACTGACTAGATGTAAAATAT
CTTGCAagaattttcaatgtttttcaacTTAAAATGCAATCAGGACAATC
TGGATAGTTAAATTATATTGTATGTTGAATATCTGTAATGTTTATCTTCC
TTTGCCAAAATATTGGTTCTTTGCTTTTTCCCACATGGCTGGTGAAGGGA
ATTCGTCTTTCCCATGCTTTCCAAGGATGGAATTTCTAATATCCCTCTTT
CCAAAATATTGGTTCTTCGCTTTCTCCCACATGGCTGGCGAGGGGAATTC
GTCTTTCCCATGCTTTCCGAGGATGGAATTTCTAAATTCTCTCTTTCCAA
AATATTGGGATTTTGCTTTTTCCCACATACCTGGTGAGGGAAATTCGTCT
TTCCTATTCATTCCAAAAGCGTCATTTTCAATTTCCCTCACCAGTGACCT
CCGAGAGTTATCTTTTCCAAAATTCTTCCTTCCAAATCTTCTCATCAGGG
AATCTCCTCGCTTCCAGATCCCCAGAGAAGGATTTACCCTTAAGATTGAG
TGAAGGGAATCTCCTCGTCTCCAAACACTAAGTGAGGGTGATTCCAaaga
tttcttcattttcgacCCCAGGCTCAGGGAATCGTCTTTCTTTCCAATAG
CCAGGAAAGAGGATCGACCTCTTTTGGGAATTCCCCGCCGGGAATCTTTA
CGATATGTCTCCATAGCTTGTGATTTTGCAGTTTCCCACATTCCACCACT
TGGCAAATCATTCTCACCATGAGAATTTATCAATTGCTGTGCGTCATTTG
GGC Run BLAST on NCBI transcript from alignment at scaffold_451:280110..284557+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066131 ID=TCONS_00066131|Name=TCONS_00066131|organism=Clytia hemisphaerica|type=transcript|length=4448bp|location=Sequence derived from alignment at scaffold_451:280110..284557+ (Clytia hemisphaerica)
CAGACCACACCAGAGgtaaaaaaggtaaaattatttgaaatgaaAGGATT
ATTTCATTGCCTTTATGACTAACTAACTAAATTatagaaattcaaaatat
ctaTTTTACAGTAGATCCAGCTTTGCCggctttaaaagaaagttttttac
aaaagtttgaAGGCTGATATTTTTGTTCTTGTGGCTTTTAAAGTACACTG
AgcacactttttttaatttctcagCTAGTCCCTTGATTGCAAATTTTTTT
GGCGTGAGCAAATTTTTGCCTAATGCAATAATGTAATAGGGACGAATGGT
CGGGTCGAAGGGACGATGCTTACTTTCACTATTTTTTGCGTAATAAACCG
ATTTCGGCGATTTTCGttctcttaagggctctgaccatagtccaaaaatt
gatttaggtatttgaacataaaagttatatttcaggttccttaacacttt
taacaaagaattgccttaataaattgctttttaatcgaatcccttaagag
taattaagaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattcactatggtcag
agcccttaatataCCAAAATCTTTTAGCATTATGTCGTGATGAAGTGTGT
CGATCGTGGCCCCATTTCTAGAAAGTAATGATTATTTTCATCCAATTTTT
CAGGTAAGTACACCATGGTTTCGCCGATATCTCGAAGACGGGGCAATCAA
AAGATCTCTAGAAACAATATTACCATAAGAACATCTCAGCGTACGGAGTT
GAATCATCTATTAAGCATTCTGGAGAAAGATAATCGGTAAGAACTATCAC
CAAAAGATTCTGGGTTCCGTTTCCCAAGTGGAGTTTCAAGTTCACAGCGT
CGTTTAGTTGCcgataaattataaaaaaaacttctcacagaaaaattggc
aaaaatatcgtccccggtgaaaAATTATACTATTGTCCGTgctcagaaaa
atttaataaataaatgtTCACCGCAAGATATTGTGCTTATTTTTTCCATT
CCCACTGAATGTTCTGGCTCGAAAATAATGGAGCTCAAATCACCAGTCAT
GAAAAAACATAGGAATATTAATCTCCATCCAATTTTGGTACATTATTTTT
ATAGCCCCACAGGTTCAAAAAatcccactgggtctgtgagaaaaggGTGT
CTAAAGAATGCTAAATTAGGTCTTCGTTCGGTAATTTCAGATCTGCGTTT
GCTGACGGAAAAAACTCTGTCGTCGGACTCTTAAAATGTAAATAAAGTTT
AGACAGATTTGCCAACCATCGACCCTTATGAGAAATCTTTTAACTAATTT
GATCTTTGCACATTATAGAGAACGATGGTCGGTCTATGTTGTCCTCAATT
TTGTAGAGAGAAGGGCCACACTTACCAAGTGTTAATTTCTGCCGCTATAA
CATGGGGGCTGGATGTTAGGGTTAGTCCGCGAGTTTTAACGAAGatctga
aatttattttttatttcagagaATTCGAACGTGATTTAAGAATGTTGGCA
GATCGATCAGACGCAGATTTGTCAACAAGACAAAAGATTATCGATCAACA
CAATCAAACACTTGAAACAAAATTACAACGGATTCGAATGTTGTTATTAC
AACTTGAAGAAACAAACACATCATTTGCCACCTACTGAAGACAtctttcg
accgtagccgccaatttctgcgcgggcatttttttgtccgttttaccacc
ctaaaaccgtccaaGTGTTTTTTTGCgcgcctaaagacaatagaaaaaac
tgTAAAGAAATAAGAATTGGATTGAGCTTAGGGTTGATaaaaagtggcac
gcgcctgaccacgcgactacggtcgaaatgATGTATTAATATCAATTCTG
CATTTCCTCAATGTATGTCTATCAATCCGGATAAACGTTATCAAGAAGCC
GGTTGATGTGAAGGCCAAGTGACTCAGGCGACTCAAAACAGTAGACAATG
GAATATTTCTTCcgaaatgaacttgaattgacaaattTCAGATTGTCATA
AAGCATTGCTCCTATAAAAACAGAAATAGTACCACAGAGAGTGACAGGCT
AATGGAAGGACCGATGCATAGCCAACAATAAGTAATCCAGCGGTGATTTA
GAAAGACATTTAGAAAGATTGTCCGACTAATTCGAAGCTAAACTGaataa
aaactattaaaatgTGGATCAATTTTCGGATTCCTATAGGCACTTAAAAT
AAATGATGACTGAGAAACCTGGAATGGTGACTAGTTAGAACTTGGTTAAT
GGTTTATGTTTGATTCTGGTTAAccatttattttttgataactCAAAAAG
GCTTCAAggattaaccctttaagtgccacggtccttTCTTCAATAGTTAT
GGTGAAATTTatataagaaaagtaaaaaacataAAGATCATAAAAATACA
CCTGTCTTcgttcaaaaaagttgaatgaaaGGGACTAGGTCGGAGTTTTC
CAGGGTTGGATGGACGTCAAATTTTTGTCATTGTATTGATACACTCATAC
TTACGCTTATTTTGACGGCATTTGATCCCGANGATTTAGAAAGACATTTA
GAAAGACTGTCCGGCTGATTGGAAACTTAACTGAAGTAAAAACTATCGAA
ATGTGGCTCAATTTCTCAATCCCAATGAGCACATAATATAAATAATGATT
TTTAGAACCTGGAATGGTGACTAATTAATGGTTTATGGTTTAAtattctg
gaaaaaaaatttacacatagttaaccatatattttttaataactCAAAAA
GGATCTAAGGATTAaacctttaagtgccacggtccttTTTTCAATAGTTA
TGGTGAAATTTatataagaaaagtaaaaaacataAAGATCATAAAAATAC
ACCTGTCTTCgttcgaaaaagttgaatgaaAGGGACTAGGTCAGAGTTTG
CCAGGGTTGAATGGACGTCAAATTTTTGAATCATTGTACTGATACACTCA
TACTTACGCTTGTTTTGACGGCATTTGATCCCGATAAACTTGAGCCTAAT
CCcttttaaaagtgttaaagcTGATACTGACTAGATGTAAAATATCTTGC
AagaattttcaatgtttttcaacTTAAAATGCAATCAGGACAATCTGGAT
AGTTAAATTATATTGTATGTTGAATATCTGTAATGTTTATCTTCCTTTGC
CAAAATATTGGTTCTTTGCTTTTTCCCACATGGCTGGTGAAGGGAATTCG
TCTTTCCCATGCTTTCCAAGGATGGAATTTCTAATATCCCTCTTTCCAAA
ATATTGGTTCTTCGCTTTCTCCCACATGGCTGGCGAGGGGAATTCGTCTT
TCCCATGCTTTCCGAGGATGGAATTTCTAAATTCTCTCTTTCCAAAATAT
TGGGATTTTGCTTTTTCCCACATACCTGGTGAGGGAAATTCGTCTTTCCT
ATTCATTCCAAAAGCGTCATTTTCAATTTCCCTCACCAGTGACCTCCGAG
AGTTATCTTTTCCAAAATTCTTCCTTCCAAATCTTCTCATCAGGGAATCT
CCTCGCTTCCAGATCCCCAGAGAAGGATTTACCCTTAAGATTGAGTGAAG
GGAATCTCCTCGTCTCCAAACACTAAGTGAGGGTGATTCCAaagatttct
tcattttcgacCCCAGGCTCAGGGAATCGTCTTTCTTTCCAATAGCCAGG
AAAGAGGATCGACCTCTTTTGGGAATTCCCCGCCGGGAATCTTTACGATA
TGTCTCCATAGCTTGTGATTTTGCAGTTTCCCACATTCCACCACTTGGCA
AATCATTCTCACCATGAGAATTTATCAATTGCTGTGCGTCATTTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066131-exon-scaffold_451-1491911889:280110..280133 | TCONS_00066131-exon-scaffold_451-1491911889:280110..280133 | Clytia hemisphaerica | exon |
| TCONS_00066131-exon-scaffold_451-1510915933:280110..280133 | TCONS_00066131-exon-scaffold_451-1510915933:280110..280133 | Clytia hemisphaerica | exon |
| TCONS_00066131-exon-scaffold_451-1575043694:280110..280133 | TCONS_00066131-exon-scaffold_451-1575043694:280110..280133 | Clytia hemisphaerica | exon |
| TCONS_00066131-exon-scaffold_451-1491911889:282229..284557 | TCONS_00066131-exon-scaffold_451-1491911889:282229..284557 | Clytia hemisphaerica | exon |
| TCONS_00066131-exon-scaffold_451-1510915933:282229..284557 | TCONS_00066131-exon-scaffold_451-1510915933:282229..284557 | Clytia hemisphaerica | exon |
| TCONS_00066131-exon-scaffold_451-1575043694:282229..284557 | TCONS_00066131-exon-scaffold_451-1575043694:282229..284557 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_451 | supercontig | scaffold_451:280110..284557 + |
Blast
The following BLAST results are available for this feature:
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