TCONS_00066215 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066215
Unique NameTCONS_00066215
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length788

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066215 ID=TCONS_00066215|Name=TCONS_00066215|organism=Clytia hemisphaerica|type=transcript|length=788bp
TTCAGGATTGGAAGTTTGAAAGTCGATTATCAAGTCTATGGAACCGAGGA
AGTTAACAATGAAACATTGAACGATGCATTGACGAAAGCTTTCACCTCTG
AACCCAATGTTCAATCTTTCACTGCAACTGATTCATTTACTGGTCAAATT
GATCCAGCAAGTCAAACACTCCAAGCTATTGATCATTGTTCGACAAACCC
ATGCCACGTCAATGCAACCTGTGAGAACAATGCATTAAAAAACACCTTCA
CTTGCAGATGTAAGGACGACAGTATCGGAGATGGCTTTTCATGTTCCTAC
ATCATTCATGTGAAAGTCAAGGAACAAGTCACAGACAATGAATGGTCAAC
AGATTCCATCATTATTGTTTCTGTTTTGTTTGCTGCTTGTTTCATCATCA
TTGTCATCTTATCATTCTGTTTATGTTGCAGACAAAGTGATGGATACAGC
ACAAGAAAAGGAGTTTTCATTCGTGGCCAGAACTATGATAACTACTATTC
AACAGATGCACCATCAATAAAAGAAAAGGGACACTCGCTTCCTGTTGCTC
AGAATATGTATATGACATCTGATCCTTCCGAATTGAAAGATTCATCGACA
TTCACTGATAAAGTACAAATGTCAGAAATGTCAGATTTGGACAAGAAGAA
TTCGAACTTCGTGATGTAAATTAGATCGCAATTGTGCAAATGATATAGAC
AACCTGTAAATATTATACGTAAGGATGAATCAAGACGAACATGTTTTCTA
GAAGATTTCCATTTCGGAAGTACGGAAGCTTTCCTTCT
Run BLAST on NCBI

protein sequence of TCONS_00066215-protein

>TCONS_00066215-protein ID=TCONS_00066215-protein|Name=TCONS_00066215-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
FRIGSLKVDYQVYGTEEVNNETLNDALTKAFTSEPNVQSFTATDSFTGQI
DPASQTLQAIDHCSTNPCHVNATCENNALKNTFTCRCKDDSIGDGFSCSY
IIHVKVKEQVTDNEWSTDSIIIVSVLFAACFIIIVILSFCLCCRQSDGYS
TRKGVFIRGQNYDNYYSTDAPSIKEKGHSLPVAQNMYMTSDPSELKDSST
FTDKVQMSEMSDLDKKNSNFVM
Run BLAST on NCBI

transcript from alignment at scaffold_451:216202..220144-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066215 ID=TCONS_00066215|Name=TCONS_00066215|organism=Clytia hemisphaerica|type=transcript|length=3943bp|location=Sequence derived from alignment at scaffold_451:216202..220144- (Clytia hemisphaerica)
TTCAGGATTGGAAGTTTGAAAGTCGATTATCAAGTCTATGGAACCGAGGA
AGTTAACAATGAAACATTGAACGATGCATTGACGAAAGCTTTCACCTCTG
AACCCAATGTTCAATCTTTCACTGCAACTGATTCATTTACTGGTCAAATT
GATCCAGCAAGTCAAACACTCCAAGGTACNCTGTCTTTGCTTTAATAACT
GGTTTACATGGTAAAATATTCTGGTTTTTCTTTTAAGTTCTAGTAATATA
TGGGCGACACCTGTGGACAATCAAATGAATTTGAATGGTACATGGCCCCC
GGCGTGCAAATCGAATTGAGGGGGCGAAAAAAATATGTCGCCCACCATGG
TTGGGCGACGAAGAAAATTTTCGACTTTTTACCCTTATTTCACCCCTCTA
AACGGTATATATAAGATTNCCTGGGGTTTACCGCATTGGATTCTCAGGCT
AATAGTGTGTATCAATCCGGGGAGGGGGCAGTTAGGCAAAATTGGGTACG
GGGACATGGCCCCCGGCGTGCAAATCGAATTGAGGGGGCCAAAAAAATGT
GTCCACCATGGTTGGGCGACGAAGAAAATTTTCGACTTTTTACCCTTATT
TCACCCCTCTAAACGGTATATATAAGATTTTTTAAAGTAAAAAAAAATAC
TTTGCAAAATATTGGGGGGGCCATGCGGGGACGTGCCGCTGGTCAGGGTC
CCTTTTTTAGGTTCTGACGATGTGGGAGTGTATAGCATAATATCACGACT
ATAGAACTGGTAAAAAACACAGGAAGAAATCTTTAACCGACGTTGTAAAA
ACTCCAGATCATCTGCATTTCAACGGATAATTTCTCATATTTACAGCTTT
TAAATCCTCATTTTTTAGCTATTGATCATTGTTCGACAAACCCATGCCAC
GTCAATGCAACCTGTGAGAACAATGCATTAAAAAACACCTTCACTTGCAG
ATGTAAGGACGACAGTATCGGAGATGGCTTTTCATGTTCCTACATCATTC
ATGTGAAAGTCAAGGAACAAGTCACAGACAATGAATGTAAGTTCTAAATT
TTATCATGAAATTATCATTCGCTTTTGCTTGAATATCGCTTGTATCACTT
TCAGCATATATTTTATTCCACATTTGATGATATCCTAACAAAATAATCAG
CGTATCATTAGCATTAAATGACTAAAGGACATTATTGAACGTATCTACCG
TTTGCTTTCACATCATTTTGGAACTCCAGCGCTGCACCAGCAAAAAAATC
TGTGGAAAATCTATTGTTTATTTCTATGTCAAGCAAGCGTAGTGAGCGTA
AGGCAACGAACCGTTAGCTTTTAGAGTCATAGGTTGCTATATTTTAAGTA
GTCTATTGTTTATTGTGTTTTGTCAGAGGTGCGTCTCCTTTCTGTATAAT
AAAAAATAACTTTTACATACTGGACTCAACTTGAAGTAACATAAATTCAA
TTCGCTTGTGTTTCCGGGTTTCATATGTATCCAATATTTGTTTATCTAAT
CATTCAAATTTTATTCCACATAAATATTTATTTACTGTTCTCTTAAGTTC
TCTACCGCTTACACGTTTTTTATATAAGAGCATCGAACATTTTTGAAGCC
TTTGAATGTTCTTAACTTTTTGAGATTTAAGCCTAAAAATGTTCTTAACA
TGTTCTTATTTTCACCATTTTGCGGGTATTTTGTCTGTTTCCTAAGAAAT
CGGGTGTTTTGAAGTCCCCGAAGCCTTGAAATGTTCTTTACTTGCTCTTA
ACATTTTGGCTATCGACGCCCTATGTTCTATATATATAATTTGTTATTAT
AAAAAAAACTATTAAAATTCTAACATAGATATTCATTACTTTTCATTTCA
TACAGGGTCAACAGATTCCATCATTATTGTTTCTGTTTTGTTTGCTGCTT
GTTTCATCATCATTGTCATCTTATCATTCTGTTTATGTTGCAGACAAAGT
GATGGGTAAGATAACTTGTTTCATCCAAAATGGTTATGATCGTTAGTAGA
ATCAAAGGAAAAATCAATGAAATATACTAACATCTATAAACCTTTATGTA
GTTCTAACAATTACTACCTTATCGCCTCACTATATTTTATAACAGTAATA
GTAATTTAGAATTAGGATTTAGAAACAAAGCAAGTTATTTCCGTTGTAGA
GAGCGCATACCAACAAAATGTAAAAGAGCTGAATCAATTTCATAATTTTA
TTTGTAAAAGTGAAAAATATTCACTACTGTCAGTTTCACACTGAACGATT
GTCAAGTGTAAAACTAGAATTAAGATTTAAAGTGACATAACAGTAGTAAA
GTGTAAACATTGCACGAACCACGTGTCATTAAAGAGAACAATTAAAATCA
CGTGTCTAAAACAAACTTGTAAAACAATTGAAACAATCAAAATCAGCCAT
ATTTGGTTTGATTTTTTTTTAACATGTAACATTTGTTTTGATTTTGTATC
CCGCTGCGTACGTGTTTACAAATTTCGTCAGTACTTTAATGCCCCTTTAA
TATGTTTTATAAAAAATGCAGCCTCTTTATCTGATCTTCGACAATAAAAA
GCCAAAACTTTTTCTTGAAATCTATAATAAAATATAAAATATGAATTATA
AAATAAAAAATATTGGACTAAAGGATCAGCTTACTAAAGACCATTACAGG
ACATGCATTTTGAACACATGTGTCTGAACTTGATTTACCATTTCATTTCT
TTAGATACAGCACAAGAAAAGGAGTTTTCATTCGTGGCCAGAACTATGAT
AACTACTATTCAACAGATGCACCATCAATAAAAGAAAAGGGACACTCGCT
TCCTGTTGCTCAGAATATGTATATGACATCTGATCCTTCCGAATTGAAAG
ATTCATCGACATTCACTGATAAAGTACAAGTAAGTATTACTTCAAAGACT
TACACGCTACTTTATGTAAGAAAAATTTCTAGGCTGAACATTAACCAAAT
CATCATAAGAATACTTTAAGAATATCTTTTGGGTGAGGTGGAAAGTTAAA
GGAAGCATGCTATAGGCAGCAAATGACATGGAGTTTTTATAAGATACTTT
AATAATTGGTCATTTGAAGTAATAAAAATGACGCGTTCTTTAGAAAAAGT
AACAAAATTGTTTTATTACTGGTTAACGACCAACCAAATCAAATAAGAGC
TCCAACTCGTCCCATAGGCAGTAGCGTAATTTTTTTCGGAGAGCAGATTT
CTATGACACTGTAATTATATTTTTTTATTGTGAATAGATAGTAAGAGTGT
CATAAAATTCTGCTCTCCTACAAAGATTTTGCGCCCCTCTTGGCTATGCT
ACTGAATAGGACATACAAGGAACGTATCATTGGTCACATATCCAGCTTCA
AAACTACGTATTCAATATAATTTCCTGCTATTGAGTTATCCAAAAAGATT
GACTAAAGTAGCAATTAAAAAGTCTCAAATACATACTATTAAGTCACATC
GCGTGTTGGCTGCATGCGTCCCCTCTGGTATATTCTGATATAGGGTATAC
TAATCGTGTATAAAATTCCCGTCCGAGAGTTTCCCTTAAATTTCGGTAAC
CTATGTCAATTTTCACAAAAAGGTTTAGAAATTCAATGATTGTATGAACA
TCTAGCCATTCATAATTTAAATCTTATGATATTTAAAGATTTCTCACACG
AATCTTACTAACCAAGCTTCTAAAACTCCAAAACACAAAGACAGGGGTAA
CTCTCGGACGGGAATTTTAAACACGATACTACATCAAATTGTGCTTGAAT
ATTTTTGCTTTGATTTTATCTAGATGTCAGAAATGTCAGATTTGGACAAG
AAGAATTCGAACTTCGTGATGTAAATTAGATCGCAATTGTGCAAATGATA
TAGACAACCTGTAAATATTATACGTAAGGATGAATCAAGACGAACATGTT
TTCTAGAAGATTTCCATTTCGGAAGTACGGAAGCTTTCCTTCT

Coding sequence (CDS) from alignment at scaffold_451:216202..220144-

>TCONS_00066215 ID=TCONS_00066215|Name=TCONS_00066215|organism=Clytia hemisphaerica|type=CDS|length=3345bp|location=Sequence derived from alignment at scaffold_451:216202..220144- (Clytia hemisphaerica)
ATGTCAGAAATGTCAGATTTGGACAAGAAGAATTCGAACTTCGTGATGTA
AATACAGCACAAGAAAAGGAGTTTTCATTCGTGGCCAGAACTATGATAAC
TACTATTCAACAGATGCACCATCAATAAAAGAAAAGGGACACTCGCTTCC
TGTTGCTCAGAATATGTATATGACATCTGATCCTTCCGAATTGAAAGATT
CATCGACATTCACTGATAAAGTACAAGGTCAACAGATTCCATCATTATTG
TTTCTGTTTTGTTTGCTGCTTGTTTCATCATCATTGTCATCTTATCATTC
TGTTTATGTTGCAGACAAAGTGATGGCTATTGATCATTGTTCGACAAACC
CATGCCACGTCAATGCAACCTGTGAGAACAATGCATTAAAAAACACCTTC
ACTTGCAGATGTAAGGACGACAGTATCGGAGATGGCTTTTCATGTTCCTA
CATCATTCATGTGAAAGTCAAGGAACAAGTCACAGACAATGAATTTCAGG
ATTGGAAGTTTGAAAGTCGATTATCAAGTCTATGGAACCGAGGAAGTTAA
CAATGAAACATTGAACGATGCATTGACGAAAGCTTTCACCTCTGAACCCA
ATGTTCAATCTTTCACTGCAACTGATTCATTTACTGGTCAAATTGATCCA
GCAAGTCAAACACTCCAAGATGTCAGAAATGTCAGATTTGGACAAGAAGA
ATTCGAACTTCGTGATGTAAATACAGCACAAGAAAAGGAGTTTTCATTCG
TGGCCAGAACTATGATAACTACTATTCAACAGATGCACCATCAATAAAAG
AAAAGGGACACTCGCTTCCTGTTGCTCAGAATATGTATATGACATCTGAT
CCTTCCGAATTGAAAGATTCATCGACATTCACTGATAAAGTACAAGGTCA
ACAGATTCCATCATTATTGTTTCTGTTTTGTTTGCTGCTTGTTTCATCAT
CATTGTCATCTTATCATTCTGTTTATGTTGCAGACAAAGTGATGGCTATT
GATCATTGTTCGACAAACCCATGCCACGTCAATGCAACCTGTGAGAACAA
TGCATTAAAAAACACCTTCACTTGCAGATGTAAGGACGACAGTATCGGAG
ATGGCTTTTCATGTTCCTACATCATTCATGTGAAAGTCAAGGAACAAGTC
ACAGACAATGAATTTCAGGATTGGAAGTTTGAAAGTCGATTATCAAGTCT
ATGGAACCGAGGAAGTTAACAATGAAACATTGAACGATGCATTGACGAAA
GCTTTCACCTCTGAACCCAATGTTCAATCTTTCACTGCAACTGATTCATT
TACTGGTCAAATTGATCCAGCAAGTCAAACACTCCAAGATGTCAGAAATG
TCAGATTTGGACAAGAAGAATTCGAACTTCGTGATGTAAATACAGCACAA
GAAAAGGAGTTTTCATTCGTGGCCAGAACTATGATAACTACTATTCAACA
GATGCACCATCAATAAAAGAAAAGGGACACTCGCTTCCTGTTGCTCAGAA
TATGTATATGACATCTGATCCTTCCGAATTGAAAGATTCATCGACATTCA
CTGATAAAGTACAAGGTCAACAGATTCCATCATTATTGTTTCTGTTTTGT
TTGCTGCTTGTTTCATCATCATTGTCATCTTATCATTCTGTTTATGTTGC
AGACAAAGTGATGGCTATTGATCATTGTTCGACAAACCCATGCCACGTCA
ATGCAACCTGTGAGAACAATGCATTAAAAAACACCTTCACTTGCAGATGT
AAGGACGACAGTATCGGAGATGGCTTTTCATGTTCCTACATCATTCATGT
GAAAGTCAAGGAACAAGTCACAGACAATGAATTTCAGGATTGGAAGTTTG
AAAGTCGATTATCAAGTCTATGGAACCGAGGAAGTTAACAATGAAACATT
GAACGATGCATTGACGAAAGCTTTCACCTCTGAACCCAATGTTCAATCTT
TCACTGCAACTGATTCATTTACTGGTCAAATTGATCCAGCAAGTCAAACA
CTCCAAGATGTCAGAAATGTCAGATTTGGACAAGAAGAATTCGAACTTCG
TGATGTAAATACAGCACAAGAAAAGGAGTTTTCATTCGTGGCCAGAACTA
TGATAACTACTATTCAACAGATGCACCATCAATAAAAGAAAAGGGACACT
CGCTTCCTGTTGCTCAGAATATGTATATGACATCTGATCCTTCCGAATTG
AAAGATTCATCGACATTCACTGATAAAGTACAAGGTCAACAGATTCCATC
ATTATTGTTTCTGTTTTGTTTGCTGCTTGTTTCATCATCATTGTCATCTT
ATCATTCTGTTTATGTTGCAGACAAAGTGATGGCTATTGATCATTGTTCG
ACAAACCCATGCCACGTCAATGCAACCTGTGAGAACAATGCATTAAAAAA
CACCTTCACTTGCAGATGTAAGGACGACAGTATCGGAGATGGCTTTTCAT
GTTCCTACATCATTCATGTGAAAGTCAAGGAACAAGTCACAGACAATGAA
TTTCAGGATTGGAAGTTTGAAAGTCGATTATCAAGTCTATGGAACCGAGG
AAGTTAACAATGAAACATTGAACGATGCATTGACGAAAGCTTTCACCTCT
GAACCCAATGTTCAATCTTTCACTGCAACTGATTCATTTACTGGTCAAAT
TGATCCAGCAAGTCAAACACTCCAAGATGTCAGAAATGTCAGATTTGGAC
AAGAAGAATTCGAACTTCGTGATGTAAATACAGCACAAGAAAAGGAGTTT
TCATTCGTGGCCAGAACTATGATAACTACTATTCAACAGATGCACCATCA
ATAAAAGAAAAGGGACACTCGCTTCCTGTTGCTCAGAATATGTATATGAC
ATCTGATCCTTCCGAATTGAAAGATTCATCGACATTCACTGATAAAGTAC
AAGGTCAACAGATTCCATCATTATTGTTTCTGTTTTGTTTGCTGCTTGTT
TCATCATCATTGTCATCTTATCATTCTGTTTATGTTGCAGACAAAGTGAT
GGCTATTGATCATTGTTCGACAAACCCATGCCACGTCAATGCAACCTGTG
AGAACAATGCATTAAAAAACACCTTCACTTGCAGATGTAAGGACGACAGT
ATCGGAGATGGCTTTTCATGTTCCTACATCATTCATGTGAAAGTCAAGGA
ACAAGTCACAGACAATGAATTTCAGGATTGGAAGTTTGAAAGTCGATTAT
CAAGTCTATGGAACCGAGGAAGTTAACAATGAAACATTGAACGATGCATT
GACGAAAGCTTTCACCTCTGAACCCAATGTTCAATCTTTCACTGCAACTG
ATTCATTTACTGGTCAAATTGATCCAGCAAGTCAAACACTCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041437XLOC_041437Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066215-proteinTCONS_00066215-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066215-exon-scaffold_451-1575043694:219970..220144TCONS_00066215-exon-scaffold_451-1575043694:219970..220144Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1575043694:219109..219276TCONS_00066215-exon-scaffold_451-1575043694:219109..219276Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1575043694:218190..218289TCONS_00066215-exon-scaffold_451-1575043694:218190..218289Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1575043694:217266..217440TCONS_00066215-exon-scaffold_451-1575043694:217266..217440Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1575043694:216202..216371TCONS_00066215-exon-scaffold_451-1575043694:216202..216371Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1510915933:219970..220144TCONS_00066215-exon-scaffold_451-1510915933:219970..220144Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1510915933:219109..219276TCONS_00066215-exon-scaffold_451-1510915933:219109..219276Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1510915933:218190..218289TCONS_00066215-exon-scaffold_451-1510915933:218190..218289Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1510915933:217266..217440TCONS_00066215-exon-scaffold_451-1510915933:217266..217440Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1510915933:216202..216371TCONS_00066215-exon-scaffold_451-1510915933:216202..216371Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1491911889:219970..220144TCONS_00066215-exon-scaffold_451-1491911889:219970..220144Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1491911889:219109..219276TCONS_00066215-exon-scaffold_451-1491911889:219109..219276Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1491911889:218190..218289TCONS_00066215-exon-scaffold_451-1491911889:218190..218289Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1491911889:217266..217440TCONS_00066215-exon-scaffold_451-1491911889:217266..217440Clytia hemisphaericaexon
TCONS_00066215-exon-scaffold_451-1491911889:216202..216371TCONS_00066215-exon-scaffold_451-1491911889:216202..216371Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:216202..220144 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.857838	1.07554	0	0	0.908948	0.78356	0.708999	0.516255	1.96211	2.94206	2.42108	0.69374	25.592	17.6901	26.5126	19.7149	5.51979	7.82636	0.78163	0.40896	0.17773	0.433452	0.140512	0.702599	0.131575	0.998132	13.359	18.2921	7.141	6.02831
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000742EGF-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066215 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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