|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066110 ID=TCONS_00066110|Name=TCONS_00066110|organism=Clytia hemisphaerica|type=transcript|length=1891bp tttcttttgaaagaaactcgtttcaattacacttggaggtttcttgGGAA TATGTAAATAGTAAAcagcatactgatacagtctgctagacattaatatg gtaatattttctcttcatctttgttttttttgacagtgattagattgaca catgcgcgataaaatttctattattggtcttcagaggttaatatactCGA ACGGCTCCTTATTTCAAACAAGCTTTCttatcccttcagttaacagtACG TAATaagccttactccataactaGAACTTTTATTCCCTGGTGCGTGTTCA AGTTACAGAGACTGTATTATAAacacacccttctcacagacctaatagga ttttttcagccagtgggggtaaaaataacggaccataACTCGACGAGGAT TGATAGTCCCATGTCTTTCATGATTGGGGatctgaattttatttttcgag ccaaaaaattcagtgaggattgaaaagaatagcacaatattttgcagtga ggatttgtttatctgattattttcagcggggacaaaaatttgagtataat tttccactggaaacgatattttggccaatttctttCGTCACAATGGGTCt agagaagggggtgttataaaagaaatacaaaatccaaaaacaacttaact tttttagataaaaatacTAACGAAAACAATGCTGGTCAGAAGAATCACTG GCAAACAGTTCAAAACCACATTCCCAACACGAACTATATTCACGGAGCTG GAACAAAAAGAGCTGAACCAACCACGAATCAAATGTCGTAATAGACCTTA TCTGGCAGGCGCCAAATCCGACAAATTCCCGGAATATATATCAATGAGTG TCAATAAATATTTCTCTGGTATCAAACTAAAAGACCCTAAAAACACTCCA CATATGAAAGATATAGCTTTGGAATTTCGTAAACATATCGATGAGAACTT AAAAACTCACAGTGCTTTCCTACTAAAAGGTTTACCAACAAACGGTGTTG atgaaattcaagattttatATCAGGAATGGAATATAAATCGTTTTATTAT GATGCAGGGAATGCAGCAAGGAGTAGTGTTGGTGAGTACCTGTACACAGC TTCGGATGAACCAAAAGATGTTTCAATCGAACCTCATAATGAAATGGCAT ATTTGGAAACATTCCCGAGTAAGatAATGTTTTACTGTGCATCAGCAGCT GACTATGGAGGTGATTCACCAGTTGTTTTTAATCGTGACATCAAAAAAAG TCTGGATACGAGTGACGTATATGAAAAAATGAATAAGAAGAAGATCAGAT ACATTCGTAATTTATCACATGAGAAAAACTCACCATATTTAACATGGCAG GAGACATTCAAGACGAAAAGTGAAGAGAAAGCAGAGAAAGTCATGCGGCG TGAGAACATGGATTGGGAGTGGCAACCCAACGGAGATCTTTCATTATGGA ACACAGCAAGTGCAACTACACAACACCCTGTAACGAAAGAAGAAATATGG TTTAATCAAGTCACGGCTGCACATTCATCTTACTATAAAGACATGTCAAT TAATGTGAATAACCAACATTTACCGGCCAATCAATTTCCATTACATACTT GTTACGGTGATGGTGAAGAAATAACCGACGAAGAGGTGGATGAAATTCGT TCAGCCACGTGGTCAAATGCAATGTCGTTGAAATTACAACCTGGAGATGT TTTATTACTCGATAATTTATTGGCATTACATTCAAGAATGAGCTACGAAG gaggagaaagaaaaatattggttAATTTAAGTTACTAAGTTACACAAGTA TTCGCAAAGTTTTTTGAAGGATCACGGTAATGACAGGTCATCTAATATAT ATTATGACTGTCTGAACTAGACTAAACGTACTAGCAATTTA Run BLAST on NCBI protein sequence of TCONS_00066110-protein >TCONS_00066110-protein ID=TCONS_00066110-protein|Name=TCONS_00066110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
MLVRRITGKQFKTTFPTRTIFTELEQKELNQPRIKCRNRPYLAGAKSDKF PEYISMSVNKYFSGIKLKDPKNTPHMKDIALEFRKHIDENLKTHSAFLLK GLPTNGVDEIQDFISGMEYKSFYYDAGNAARSSVGEYLYTASDEPKDVSI EPHNEMAYLETFPSKIMFYCASAADYGGDSPVVFNRDIKKSLDTSDVYEK MNKKKIRYIRNLSHEKNSPYLTWQETFKTKSEEKAEKVMRRENMDWEWQP NGDLSLWNTASATTQHPVTKEEIWFNQVTAAHSSYYKDMSINVNNQHLPA NQFPLHTCYGDGEEITDEEVDEIRSATWSNAMSLKLQPGDVLLLDNLLAL HSRMSYEGGERKILVNLSY Run BLAST on NCBI transcript from alignment at scaffold_450:218673..221711- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066110 ID=TCONS_00066110|Name=TCONS_00066110|organism=Clytia hemisphaerica|type=transcript|length=3039bp|location=Sequence derived from alignment at scaffold_450:218673..221711- (Clytia hemisphaerica) TTTCTTTTGAAAGAAACTCGTTTCAATTACACTTGGAGGTTTCTTGGGAA
TATGTAAATAGTAAACAGCATACTGATACAGTCTGCTAGACATTAATATG
GTAATATTTTCTCTTCATCTTTGTTTTTTTTGACAGTGATTAGATTGACA
CATGCGCGATAAAATTTCTATTATTGGTCTTCAGAGGTTAATATACTCGA
ACGGCTCCTTATTTCAAACAAGCTTTCTTATCCCTTCAGTTAACAGTACG
TAATAAGCCTTACTCCATAACTAGAACTTTTATTCCCTGGTGCGTGTTCA
AGTTACAGAGACTGTATTATAAACACACCCTTCTCACAGACCTAATAGGA
TTTTTTCAGCCAGTGGGGGTAAAAATAACGGACCATAACTCGACGAGGAT
TGATAGTCCCATGTCTTTCATGATTGGGGATCTGAATTTTATTTTTCGAG
CCAAAAAATTCAGTGAGGATTGAAAAGAATAGCACAATATTTTGCAGTGA
GGATTTGTTTATCTGATTATTTTCAGCGGGGACAAAAATTTGAGTATAAT
TTTCCACTGGAAACGATATTTTGGCCAATTTCTTTCGTCACAATGGGTCT
AGAGAAGGGGGTGTTATAAAAGAAATACAAAATCCAAAAACAACTTAACT
TTTTTAGATAAAAATACTAACGAAAACAATGCTGGTCAGAAGAATCACTG
GCAAACAGTTCAAAACCACATTCCCAACACGAACTATATTCACGGAGCTG
GAACAAAAAGAGCTGAACCAACCACGAATCAAATGTCGTAATAGACCTTA
TCTGGCAGGCGCCAAATCCGACAAATTCCCGGAATATATATCAATGAGTG
TCAATAAATATTTCTCTGGTATCAAACTAAAAGACCCTAAAAACACTCCA
CATATGAAAGATATAGCTTTGGAATTTCGTAAACATATCGATGAGAACTT
AAAAACTCACAGTGCTTTCCTACTAAAAGGTTTACCAACAAACGGTGTTG
ATGAAATTCAAGATTTTATATCAGGAATGGAATATAAATCGTTTTATTAT
GATGCAGGGAATGCAGCAAGGAGTAGTGTTGGTGAGTACCTGTACACAGC
TTCGGATGAACCAAAAGATGTTTCAATCGAACCTCATAATGAAATGGCAT
ATTTGGAAACATTCCCGAGTAAGGTAAACCTTTTTAAAGTTGTTAAAGAA
TTTGTCGGATTATTTCAGCCATTGGGGGGGAGGGTAAAAATAAAGGACTA
TAAAACTATTAATTATTATATTTTTACGGCTGTGGATTTAGATTTCATTA
TTTTCAAGTCAGGAATTTCAGTGGAGATGGGGAAAAAAGCAGAACTTTTT
GCAGTGAGGATTTTTTATTTGACTTTTTTTCAGTGGAGACGAAAATTGGA
CTATTATTTTCCATCGGGGACGAAATTTTGGGCAATTATTAAATTCGGAA
AGGTCCCAGGTGCGGGCTGCGGGACAGGGTGTAGTGATAATTCACTGTAT
TTATTCTGCGATAAAAAAATTTATTTTCAGATAATGTTTTACTGTGCATC
AGCAGCTGACTATGGAGGTGATTCACCAGTTGTTTTTAATCGTGACATCA
AAAAAAGTCTGGATACGAGTGACGTATATGAAAAAATGAATAAGAAGAAG
ATCAGATACATTCGTAATTTATCACATGAGAAAAACTCACCATATTTAAC
ATGGCAGGAGACATTCAAGACGAAAAGTGAAGAGGTAATTTGATTATCCA
GGAGCACTGACTTTGACGACCAACGGGGACTGCTGCCACTAAAGTTGAAA
ATTTTTCTAATTTTGACCCTGAAAATTGTCCAAGATAAGCAAAAGTCGAC
CCTCTCAGATATACAGATATACATCTTGAAAATTAGTGCATTCGGACCCT
TTCAGGTATCTTCAGAGCCCAAAAAGGAACCCTGACCAGCGGTCCCATAC
CCAATTTTACCAAAGTGTCTCCCACAGGTGGAATTGTAAATAAACCTTTG
ATAGAGACGCTAATGAGAGGATTTCATTAATTCACTATCCATAGAAAGCA
GAGAAAGTCATGCGGCGTGAGAACATGGATTGGGAGTGGCAACCCAACGG
AGATCTTTCATTATGGAACACAGCAAGTGCAACTACACAACACCCTGTAA
CGAAAGAAGAAATATGGTTTAATCAAGTCACGGCTGCACATTCATCTTAC
TATAAAGACATGTCAATTGTAAGTCATTATTCAAAACAATTTTTCATCAG
AAAGTTGTAGAGTCTGCTAAATCAAGCGCCTCATGCGCCCACGCCATTTT
TTCATGCGCCTTGAGTTTTTTGACGCACCTTATATTCTTCACGCGCCCAT
ATTTTTCCCGCGCCTTAATTAATTTCATGCGCCCTTGAATTTTCACGCGC
ACATATTTTCTACCAGTTTCTACGCGCCTTAATTTCTTTTGCACGCCCAT
ATTTTCCAGGCGCTTTTAATTTTTTTTCACACGCGCCCTAAAATTTTTAC
GCGCTCTAACTTTTCATGTGTCTTGATTTTTCACGTGCCTTGATTTTTCA
CCTAAGAAATCTTTAAATTTAAGTTTCCCACAGTTTTAAAGGAATTACTC
GGGGGTCTCAATAAGAACAGAGGTTCCGAAAATTTCTGAAGAAAATTAAT
AAGCGGGGGAGACATTTATTCGCGACCTTAGATCCTTTTCTCTTTCCAGA
ATGTGAATAACCAACATTTACCGGCCAATCAATTTCCATTACATACTTGT
TACGGTGATGGTGAAGAAATAACCGACGAAGAGGTGGATGAAATTCGTTC
AGCCACGTGGTCAAATGCAATGTCGTTGAAATTACAACCTGGAGATGTTT
TATTACTCGATAATTTATTGGCATTACATTCAAGAATGAGCTACGAAGGA
GGAGAAAGAAAAATATTGGTTAATTTAAGTTACTAAGTTACACAAGTATT
CGCAAAGTTTTTTGAAGGATCACGGTAATGACAGGTCATCTAATATATAT
TATGACTGTCTGAACTAGACTAAACGTACTAGCAATTTA Coding sequence (CDS) from alignment at scaffold_450:218673..221711- >TCONS_00066110 ID=TCONS_00066110|Name=TCONS_00066110|organism=Clytia hemisphaerica|type=CDS|length=4440bp|location=Sequence derived from alignment at scaffold_450:218673..221711- (Clytia hemisphaerica) AATGTGAATAACCAACATTTACCGGCCAATCAATTTCCATTACATACTTG TTACGGTGATGGTGAAGAAATAACCGACGAAGAGGTGGATGAAATTCGTT CAGCCACGTGGTCAAATGCAATGTCGTTGAAATTACAACCTGGAGATGTT TTATTACTCGATAATTTATTGGCATTACATTCAAGAATGAGCTACGAAGG AGGAGAAAGAAAAATATTGGTTAATTTAAGTTACTAAAAAGCAGAGAAAG TCATGCGGCGTGAGAACATGGATTGGGAGTGGCAACCCAACGGAGATCTT TCATTATGGAACACAGCAAGTGCAACTACACAACACCCTGTAACGAAAGA AGAAATATGGTTTAATCAAGTCACGGCTGCACATTCATCTTACTATAAAG ACATGTCAATTATAATGTTTTACTGTGCATCAGCAGCTGACTATGGAGGT GATTCACCAGTTGTTTTTAATCGTGACATCAAAAAAAGTCTGGATACGAG TGACGTATATGAAAAAATGAATAAGAAGAAGATCAGATACATTCGTAATT TATCACATGAGAAAAACTCACCATATTTAACATGGCAGGAGACATTCAAG ACGAAAAGTGAAGAGATGCTGGTCAGAAGAATCACTGGCAAACAGTTCAA AACCACATTCCCAACACGAACTATATTCACGGAGCTGGAACAAAAAGAGC TGAACCAACCACGAATCAAATGTCGTAATAGACCTTATCTGGCAGGCGCC AAATCCGACAAATTCCCGGAATATATATCAATGAGTGTCAATAAATATTT CTCTGGTATCAAACTAAAAGACCCTAAAAACACTCCACATATGAAAGATA TAGCTTTGGAATTTCGTAAACATATCGATGAGAACTTAAAAACTCACAGT GCTTTCCTACTAAAAGGTTTACCAACAAACGGTGTTGATGAAATTCAAGA TTTTATATCAGGAATGGAATATAAATCGTTTTATTATGATGCAGGGAATG CAGCAAGGAGTAGTGTTGGTGAGTACCTGTACACAGCTTCGGATGAACCA AAAGATGTTTCAATCGAACCTCATAATGAAATGGCATATTTGGAAACATT CCCGAGTAAGAATGTGAATAACCAACATTTACCGGCCAATCAATTTCCAT TACATACTTGTTACGGTGATGGTGAAGAAATAACCGACGAAGAGGTGGAT GAAATTCGTTCAGCCACGTGGTCAAATGCAATGTCGTTGAAATTACAACC TGGAGATGTTTTATTACTCGATAATTTATTGGCATTACATTCAAGAATGA GCTACGAAGGAGGAGAAAGAAAAATATTGGTTAATTTAAGTTACTAAAAA GCAGAGAAAGTCATGCGGCGTGAGAACATGGATTGGGAGTGGCAACCCAA CGGAGATCTTTCATTATGGAACACAGCAAGTGCAACTACACAACACCCTG TAACGAAAGAAGAAATATGGTTTAATCAAGTCACGGCTGCACATTCATCT TACTATAAAGACATGTCAATTATAATGTTTTACTGTGCATCAGCAGCTGA CTATGGAGGTGATTCACCAGTTGTTTTTAATCGTGACATCAAAAAAAGTC TGGATACGAGTGACGTATATGAAAAAATGAATAAGAAGAAGATCAGATAC ATTCGTAATTTATCACATGAGAAAAACTCACCATATTTAACATGGCAGGA GACATTCAAGACGAAAAGTGAAGAGATGCTGGTCAGAAGAATCACTGGCA AACAGTTCAAAACCACATTCCCAACACGAACTATATTCACGGAGCTGGAA CAAAAAGAGCTGAACCAACCACGAATCAAATGTCGTAATAGACCTTATCT GGCAGGCGCCAAATCCGACAAATTCCCGGAATATATATCAATGAGTGTCA ATAAATATTTCTCTGGTATCAAACTAAAAGACCCTAAAAACACTCCACAT ATGAAAGATATAGCTTTGGAATTTCGTAAACATATCGATGAGAACTTAAA AACTCACAGTGCTTTCCTACTAAAAGGTTTACCAACAAACGGTGTTGATG AAATTCAAGATTTTATATCAGGAATGGAATATAAATCGTTTTATTATGAT GCAGGGAATGCAGCAAGGAGTAGTGTTGGTGAGTACCTGTACACAGCTTC GGATGAACCAAAAGATGTTTCAATCGAACCTCATAATGAAATGGCATATT TGGAAACATTCCCGAGTAAGAATGTGAATAACCAACATTTACCGGCCAAT CAATTTCCATTACATACTTGTTACGGTGATGGTGAAGAAATAACCGACGA AGAGGTGGATGAAATTCGTTCAGCCACGTGGTCAAATGCAATGTCGTTGA AATTACAACCTGGAGATGTTTTATTACTCGATAATTTATTGGCATTACAT TCAAGAATGAGCTACGAAGGAGGAGAAAGAAAAATATTGGTTAATTTAAG TTACTAAAAAGCAGAGAAAGTCATGCGGCGTGAGAACATGGATTGGGAGT GGCAACCCAACGGAGATCTTTCATTATGGAACACAGCAAGTGCAACTACA CAACACCCTGTAACGAAAGAAGAAATATGGTTTAATCAAGTCACGGCTGC ACATTCATCTTACTATAAAGACATGTCAATTATAATGTTTTACTGTGCAT CAGCAGCTGACTATGGAGGTGATTCACCAGTTGTTTTTAATCGTGACATC AAAAAAAGTCTGGATACGAGTGACGTATATGAAAAAATGAATAAGAAGAA GATCAGATACATTCGTAATTTATCACATGAGAAAAACTCACCATATTTAA CATGGCAGGAGACATTCAAGACGAAAAGTGAAGAGATGCTGGTCAGAAGA ATCACTGGCAAACAGTTCAAAACCACATTCCCAACACGAACTATATTCAC GGAGCTGGAACAAAAAGAGCTGAACCAACCACGAATCAAATGTCGTAATA GACCTTATCTGGCAGGCGCCAAATCCGACAAATTCCCGGAATATATATCA ATGAGTGTCAATAAATATTTCTCTGGTATCAAACTAAAAGACCCTAAAAA CACTCCACATATGAAAGATATAGCTTTGGAATTTCGTAAACATATCGATG AGAACTTAAAAACTCACAGTGCTTTCCTACTAAAAGGTTTACCAACAAAC GGTGTTGATGAAATTCAAGATTTTATATCAGGAATGGAATATAAATCGTT TTATTATGATGCAGGGAATGCAGCAAGGAGTAGTGTTGGTGAGTACCTGT ACACAGCTTCGGATGAACCAAAAGATGTTTCAATCGAACCTCATAATGAA ATGGCATATTTGGAAACATTCCCGAGTAAGAATGTGAATAACCAACATTT ACCGGCCAATCAATTTCCATTACATACTTGTTACGGTGATGGTGAAGAAA TAACCGACGAAGAGGTGGATGAAATTCGTTCAGCCACGTGGTCAAATGCA ATGTCGTTGAAATTACAACCTGGAGATGTTTTATTACTCGATAATTTATT GGCATTACATTCAAGAATGAGCTACGAAGGAGGAGAAAGAAAAATATTGG TTAATTTAAGTTACTAAAAAGCAGAGAAAGTCATGCGGCGTGAGAACATG GATTGGGAGTGGCAACCCAACGGAGATCTTTCATTATGGAACACAGCAAG TGCAACTACACAACACCCTGTAACGAAAGAAGAAATATGGTTTAATCAAG TCACGGCTGCACATTCATCTTACTATAAAGACATGTCAATTATAATGTTT TACTGTGCATCAGCAGCTGACTATGGAGGTGATTCACCAGTTGTTTTTAA TCGTGACATCAAAAAAAGTCTGGATACGAGTGACGTATATGAAAAAATGA ATAAGAAGAAGATCAGATACATTCGTAATTTATCACATGAGAAAAACTCA CCATATTTAACATGGCAGGAGACATTCAAGACGAAAAGTGAAGAGATGCT GGTCAGAAGAATCACTGGCAAACAGTTCAAAACCACATTCCCAACACGAA CTATATTCACGGAGCTGGAACAAAAAGAGCTGAACCAACCACGAATCAAA TGTCGTAATAGACCTTATCTGGCAGGCGCCAAATCCGACAAATTCCCGGA ATATATATCAATGAGTGTCAATAAATATTTCTCTGGTATCAAACTAAAAG ACCCTAAAAACACTCCACATATGAAAGATATAGCTTTGGAATTTCGTAAA CATATCGATGAGAACTTAAAAACTCACAGTGCTTTCCTACTAAAAGGTTT ACCAACAAACGGTGTTGATGAAATTCAAGATTTTATATCAGGAATGGAAT ATAAATCGTTTTATTATGATGCAGGGAATGCAGCAAGGAGTAGTGTTGGT GAGTACCTGTACACAGCTTCGGATGAACCAAAAGATGTTTCAATCGAACC TCATAATGAAATGGCATATTTGGAAACATTCCCGAGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066110-exon-scaffold_450-1575043694:220539..221711 | TCONS_00066110-exon-scaffold_450-1575043694:220539..221711 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1575043694:219978..220181 | TCONS_00066110-exon-scaffold_450-1575043694:219978..220181 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1575043694:219494..219667 | TCONS_00066110-exon-scaffold_450-1575043694:219494..219667 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1575043694:218673..219012 | TCONS_00066110-exon-scaffold_450-1575043694:218673..219012 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1510915933:220539..221711 | TCONS_00066110-exon-scaffold_450-1510915933:220539..221711 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1510915933:219978..220181 | TCONS_00066110-exon-scaffold_450-1510915933:219978..220181 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1510915933:219494..219667 | TCONS_00066110-exon-scaffold_450-1510915933:219494..219667 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1510915933:218673..219012 | TCONS_00066110-exon-scaffold_450-1510915933:218673..219012 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1491911889:220539..221711 | TCONS_00066110-exon-scaffold_450-1491911889:220539..221711 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1491911889:219978..220181 | TCONS_00066110-exon-scaffold_450-1491911889:219978..220181 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1491911889:219494..219667 | TCONS_00066110-exon-scaffold_450-1491911889:219494..219667 | Clytia hemisphaerica | exon |
TCONS_00066110-exon-scaffold_450-1491911889:218673..219012 | TCONS_00066110-exon-scaffold_450-1491911889:218673..219012 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_450 | supercontig | scaffold_450:218673..221711 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR003819 | TauD/TfdA-like |
Vocabulary: Biological Process
Term | Definition |
GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
Term | Definition |
GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055114 |
oxidation-reduction process |
molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
The following BLAST results are available for this feature:
|