|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006561 ID=TCONS_00006561|Name=TCONS_00006561|organism=Clytia hemisphaerica|type=transcript|length=1072bp
TTAgctttgtttattagttcttaaaaattaaacaacagttgttcttaaat
tggtctctttNNgctcgatgtaaagtagatttcaaattggcttcaatctc
tacttcttgtttttcctatgtagtttaaattctaggcgaaattttcgact
ttaagtcgtcttgttaaaGTTTCATCAATATatctttgatatttcaaaag
ttatgactaaaaaggtaaaaaaatgactttttccatttctcagGTAACTA
CCACCTTAAAATGGGCTAATAAACCAGTTGAGTAGAGTATTTTTAGTCGT
TTTCTATATATGTATATTAAGAAAGTCTGAAGTAAAAATACTGcgaaaat
atttacaaagtcCTACGTAAgaatagaatttcttttgggtTTTCACTGTT
GAAAAAACTACAACAAAATATAAAGTGGTGTAAAAATCTAATGCCTGCCA
AAAAATACCTAGAGGCACAAAAAATCTTATTTACAGTAAAAAAACGATCA
CTCACAGTCTGGCTGTCCAAAGCCATCCAATGTCCGCAAACTCAAGATAC
TTTCATTGAAATAGTAGATTTCAGCTAAACGATGTAGTATGAAAAACTTT
TGCAACATTTCGTTTTGAGCAAGTTACATCGCATTCGAAGATTTTTTCAT
CCTCAAGGGACTAAGCTTAGCAAATGCTAACTACTGTACAGCATAAAAGG
TGTTGCCTGGTGTATGGATTTGGATCAAATGAAATGCATTTCGGCTGTCG
AAAAANgtttttttttttgggggggggggggtgtcaaGTTATTTCAGTAA
GAATCGTTTATTAGAAGCCAGAGTTACAAAATATAATAATATTATCTAAC
GATAAGATCATCGCCAGTCGTCATAGCAGCAGAAACTAAAGGAAACCACC
ACGCTTCTTCTGAGCAGTGCGTTTCTCCGAAATACGCGTAATCGTTGATC
GTAAATCGTTCTCCTTCGACGTCGTGGCGCTTGAAGCCCTACGTGATTTC
TGTGGCGGTGATTTAATGGAAGTTGAGTGACGTATATCACGTATTCTTTC
AGTGATGGTATCATAGCGTGGC Run BLAST on NCBI transcript from alignment at sc0000067:756238..757309 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006561 ID=TCONS_00006561|Name=TCONS_00006561|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at sc0000067:756238..757309 (Clytia hemisphaerica)
GCCACGCTATGATACCATCACTGAAAGAATACGTGATATACGTCACTCAA
CTTCCATTAAATCACCGCCACAGAAATCACGTAGGGCTTCAAGCGCCACG
ACGTCGAAGGAGAACGATTTACGATCAACGATTACGCGTATTTCGGAGAA
ACGCACTGCTCAGAAGAAGCGTGGTGGTTTCCTTTAGTTTCTGCTGCTAT
GACGACTGGCGATGATCTTATCGTTAGATAATATTATTATATTTTGTAAC
TCTGGCTTCTAATAAACGATTCTTACTGAAATAACttgacaccccccccc
ccccaaaaaaaaaaacNTTTTTCGACAGCCGAAATGCATTTCATTTGATC
CAAATCCATACACCAGGCAACACCTTTTATGCTGTACAGTAGTTAGCATT
TGCTAAGCTTAGTCCCTTGAGGATGAAAAAATCTTCGAATGCGATGTAAC
TTGCTCAAAACGAAATGTTGCAAAAGTTTTTCATACTACATCGTTTAGCT
GAAATCTACTATTTCAATGAAAGTATCTTGAGTTTGCGGACATTGGATGG
CTTTGGACAGCCAGACTGTGAGTGATCGTTTTTTTACTGTAAATAAGATT
TTTTGTGCCTCTAGGTATTTTTTGGCAGGCATTAGATTTTTACACCACTT
TATATTTTGTTGTAGTTTTTTCAACAGTGAAAacccaaaagaaattctat
tcTTACGTAGgactttgtaaatattttcgCAGTATTTTTACTTCAGACTT
TCTTAATATACATATATAGAAAACGACTAAAAATACTCTACTCAACTGGT
TTATTAGCCCATTTTAAGGTGGTAGTTACctgagaaatggaaaaagtcat
ttttttacctttttagtcataacttttgaaatatcaaagatATATTGATG
AAACtttaacaagacgacttaaagtcgaaaatttcgcctagaatttaaac
tacataggaaaaacaagaagtagagattgaagccaatttgaaatctactt
tacatcgagcNNaaagagaccaatttaagaacaactgttgtttaattttt
aagaactaataaacaaagcTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006561-exon-sc0000067-1491911889:756238..757309 | TCONS_00006561-exon-sc0000067-1491911889:756238..757309 | Clytia hemisphaerica | exon |
| TCONS_00006561-exon-sc0000067-1510915933:756238..757309 | TCONS_00006561-exon-sc0000067-1510915933:756238..757309 | Clytia hemisphaerica | exon |
| TCONS_00006561-exon-sc0000067-1575043694:756238..757309 | TCONS_00006561-exon-sc0000067-1575043694:756238..757309 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:756238..757309 . |
Blast
The following BLAST results are available for this feature:
|
