TCONS_00065761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065761
Unique NameTCONS_00065761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065761 ID=TCONS_00065761|Name=TCONS_00065761|organism=Clytia hemisphaerica|type=transcript|length=1290bp
Nacgacaacgaccactcctactacgacaacgaccactccttctatgacaa
cgaccactcctactacgacaacgaccactcctactacgacaacgaccact
cAAAAAACAACAACCATAACAACGGTAGAATCAACGACCACCCCTTCTAC
GACAGCGACCACCCTTGAACCAATACCAAACCCTCCACTTGGACTGATGA
AGGATAATGCAGCAAGCTCATGTAAACAAATCAAGCACGATCACCCTTTA
TCGCCAAATGGTCATTACTGGGTCGTTCTTCATGACAATGTTTCAGTATG
GTGCGACATGGAAACAGATAATGGAGGCTGGGTGAAGATTGGGCGTGTGT
ACATTGAGAATAACGCCTCTTCATACAATTATTATGATATCCTctcaaat
aatataaaaaaaatcggGAACGCTGGGTCACAGAATTATCTTTTGGATGG
AAAGCTCGACAACTTAACTAATTGGATCGGCTTCAGTGAAATTAGAATGC
GTTGTACTGGCTCATCCCCTGATCATTTATTCCATGCGAaaatcatttcc
accaaaaatgaaaaCAGCTTGGCGTTGTTCAACTACTATGTCCATGCTAC
GCCAAGACCGACCAATTTATGTGACGCCTTTCATTATCTTGCTGATGATA
CGTCTGAGCTTCGAATGTGGAGTACTGAAGCTTGTGAAAATTTAGAGCAT
GGCCACACCACGCGAAGGAATCATCGTCTATACAATAATCAATGTTACGA
TACTATTTGTGTGTCAGTGAAATTTCTCCAGTGCGATACTGAAGATATGA
ATATTGACGGCACTTGGGAATTCTTCATAAGATAATTTTTGAATGATTTC
TGGAAAAACTTTTGCCCCTAATTTTGGACGGAAAATATTCTCATGTATAT
ATTCTTTCTATCACAGTTCAGTGTATGACTGTGTATATCAAAAATGAAAG
TCTGTTACAATCGTTTGTGAATTTGAAAACGGAGAATGGAGGAAACGAAA
ACAATTCTTGAACTTGACAATTTCTTATAGTAAACACATTTGAGAGATGG
CCATACTAGAATATTTCATACCTTCATAAGATATTCGTTTACTTGTTACA
TGCTATTTTATCTCTTCAAGATACAAATCTGTAGACGTAGAAATATATCA
TGCACCATATGTACTaaaacacgaatcctatgaaataggctacaCGCCTT
TTTTATATAAAGAATGGTggaaatccatttcatcatggatattcttaact
tttttgagaaaatcatcctaaaattcttacagcattctta
Run BLAST on NCBI

protein sequence of TCONS_00065761-protein

>TCONS_00065761-protein ID=TCONS_00065761-protein|Name=TCONS_00065761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=277bp
TTTTTPTTTTTTPSMTTTTPTTTTTTPTTTTTTQKTTTITTVESTTTPST
TATTLEPIPNPPLGLMKDNAASSCKQIKHDHPLSPNGHYWVVLHDNVSVW
CDMETDNGGWVKIGRVYIENNASSYNYYDILSNNIKKIGNAGSQNYLLDG
KLDNLTNWIGFSEIRMRCTGSSPDHLFHAKIISTKNENSLALFNYYVHAT
PRPTNLCDAFHYLADDTSELRMWSTEACENLEHGHTTRRNHRLYNNQCYD
TICVSVKFLQCDTEDMNIDGTWEFFIR
Run BLAST on NCBI

transcript from alignment at scaffold_444:84927..87008-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065761 ID=TCONS_00065761|Name=TCONS_00065761|organism=Clytia hemisphaerica|type=transcript|length=2082bp|location=Sequence derived from alignment at scaffold_444:84927..87008- (Clytia hemisphaerica)
NACGACAACGACCACTCCTACTACGACAACGACCACTCCTTCTATGACAA
CGACCACTCCTACTACGACAACGACCACTCCTACTACGACAACGACCACT
CAAAAAACAACAACCATAACAACGGTAGAATCAACGACCACCCCTTCTAC
GACAGCGACCACCCTTGAACCAATACCAAACCCTCCACTTGGACTGATGA
AGGATAATGCAGCAAGCTCATGTAAACAAATCAAGCACGATCACCCTTTA
TCGCCAAATGGTCATTACTGGGTCGTTCTTCATGACAATGTTTCAGTATG
GTGCGACATGGAAACAGATAATGGTACGTTCTTACCTTCCATTTGCACTA
ACTTTTTGGTAATTTGAATTTCAGATTTTTTTTAACAACCAATTTTACTT
TTTATATATCATTAAGCTGAACTTGGTAACTCGAACTTCTTTTACCCAAA
TCGCCCTATAATTCATCAAATTAGTTCCCTAATCTCATTTGCTCTCGGCA
ATTCGAACAAATATGATTTCAAGCTTGCATCAGCAGTACTGGCTGTACTT
TTTAAGAGGACGAGAGTTGAGTGTAGCCTTGTAGGTATGATTTTTCTCAC
CAAAGACGATTTTTAATCGATTTTCCCAGCGGTTCATCTTGGGGTGTAAA
TAAATGTCAAGTATACTCGTAATTGGAAGCTATTACTCTTGTCTCCCGAA
TAGACGGGGGAGTCCGAATAAGCAGGGGGGTAGGAAAATGTTCTAAATTC
TAATAAGCGGGGGGATGGAATAAGAGGGGGGGGGGGAATTTGAAGATATA
ATTTTTTTAACTGATATCAATTTCAACAACAAAAAAGCAACTCTTAACAA
ATAAACACGTAAAATTAGAACCAATACTAACGGAGAGGAAAATTTAAGGT
TATTAGTTTAAGGTTATTCTACACTGTAATAAAATATTGAATTACTCGAA
TTTAATTACAGGGGGGGTCTTAATAAGGGCGGGGGGATGGATTTTTTTTC
GATTAACAATTAGCGGGGGGGGGCGTCTATTCGGGAGACAAGAATAGGCT
TTGTTGCTTCACAAAAAAATAAATAGAAAGTTAGTCTTTTGATCGAAATT
CTTTTAAATGTTCAGGAGGCTGGGTGAAGATTGGGCGTGTGTACATTGAG
AATAACGCCTCTTCATACAATTATTATGATATCCTCTCAAATAATATAAA
AAAAATCGGGAACGCTGGGTCACAGAATTATCTTTTGGATGGAAAGCTCG
ACAACTTAACTAATTGGATCGGCTTCAGTGAAATTAGAATGCGTTGTACT
GGCTCATCCCCTGATCATTTATTCCATGCGAAAATCATTTCCACCAAAAA
TGAAAACAGCTTGGCGTTGTTCAACTACTATGTCCATGCTACGCCAAGAC
CGACCAATTTATGTGACGCCTTTCATTATCTTGCTGATGATACGTCTGAG
CTTCGAATGTGGAGTACTGAAGCTTGTGAAAATTTAGAGCATGGCCACAC
CACGCGAAGGAATCATCGTCTATACAATAATCAATGTTACGATACTATTT
GTGTGTCAGTGAAATTTCTCCAGTGCGATACTGAAGATATGAATATTGAC
GGCACTTGGGAATTCTTCATAAGATAATTTTTGAATGATTTCTGGAAAAA
CTTTTGCCCCTAATTTTGGACGGAAAATATTCTCATGTATATATTCTTTC
TATCACAGTTCAGTGTATGACTGTGTATATCAAAAATGAAAGTCTGTTAC
AATCGTTTGTGAATTTGAAAACGGAGAATGGAGGAAACGAAAACAATTCT
TGAACTTGACAATTTCTTATAGTAAACACATTTGAGAGATGGCCATACTA
GAATATTTCATACCTTCATAAGATATTCGTTTACTTGTTACATGCTATTT
TATCTCTTCAAGATACAAATCTGTAGACGTAGAAATATATCATGCACCAT
ATGTACTAAAACACGAATCCTATGAAATAGGCTACACGCCTTTTTTATAT
AAAGAATGGTGGAAATCCATTTCATCATGGATATTCTTAACTTTTTTGAG
AAAATCATCCTAAAATTCTTACAGCATTCTTA

Coding sequence (CDS) from alignment at scaffold_444:84927..87008-

>TCONS_00065761 ID=TCONS_00065761|Name=TCONS_00065761|organism=Clytia hemisphaerica|type=CDS|length=1668bp|location=Sequence derived from alignment at scaffold_444:84927..87008- (Clytia hemisphaerica)
GAGGCTGGGTGAAGATTGGGCGTGTGTACATTGAGAATAACGCCTCTTCA
TACAATTATTATGATATCCTCTCAAATAATATAAAAAAAATCGGGAACGC
TGGGTCACAGAATTATCTTTTGGATGGAAAGCTCGACAACTTAACTAATT
GGATCGGCTTCAGTGAAATTAGAATGCGTTGTACTGGCTCATCCCCTGAT
CATTTATTCCATGCGAAAATCATTTCCACCAAAAATGAAAACAGCTTGGC
GTTGTTCAACTACTATGTCCATGCTACGCCAAGACCGACCAATTTATGTG
ACGCCTTTCATTATCTTGCTGATGATACGTCTGAGCTTCGAATGTGGAGT
ACTGAAGCTTGTGAAAATTTAGAGCATGGCCACACCACGCGAAGGAATCA
TCGTCTATACAATAATCAATGTTACGATACTATTTGTGTGTCAGTGAAAT
TTCTCCAGTGCGATACTGAAGATATGAATATTGACGGCACTTGGGAATTC
TTCATAAGATAAACGACAACGACCACTCCTACTACGACAACGACCACTCC
TTCTATGACAACGACCACTCCTACTACGACAACGACCACTCCTACTACGA
CAACGACCACTCAAAAAACAACAACCATAACAACGGTAGAATCAACGACC
ACCCCTTCTACGACAGCGACCACCCTTGAACCAATACCAAACCCTCCACT
TGGACTGATGAAGGATAATGCAGCAAGCTCATGTAAACAAATCAAGCACG
ATCACCCTTTATCGCCAAATGGTCATTACTGGGTCGTTCTTCATGACAAT
GTTTCAGTATGGTGCGACATGGAAACAGATAATGGAGGCTGGGTGAAGAT
TGGGCGTGTGTACATTGAGAATAACGCCTCTTCATACAATTATTATGATA
TCCTCTCAAATAATATAAAAAAAATCGGGAACGCTGGGTCACAGAATTAT
CTTTTGGATGGAAAGCTCGACAACTTAACTAATTGGATCGGCTTCAGTGA
AATTAGAATGCGTTGTACTGGCTCATCCCCTGATCATTTATTCCATGCGA
AAATCATTTCCACCAAAAATGAAAACAGCTTGGCGTTGTTCAACTACTAT
GTCCATGCTACGCCAAGACCGACCAATTTATGTGACGCCTTTCATTATCT
TGCTGATGATACGTCTGAGCTTCGAATGTGGAGTACTGAAGCTTGTGAAA
ATTTAGAGCATGGCCACACCACGCGAAGGAATCATCGTCTATACAATAAT
CAATGTTACGATACTATTTGTGTGTCAGTGAAATTTCTCCAGTGCGATAC
TGAAGATATGAATATTGACGGCACTTGGGAATTCTTCATAAGATAAACGA
CAACGACCACTCCTACTACGACAACGACCACTCCTTCTATGACAACGACC
ACTCCTACTACGACAACGACCACTCCTACTACGACAACGACCACTCAAAA
AACAACAACCATAACAACGGTAGAATCAACGACCACCCCTTCTACGACAG
CGACCACCCTTGAACCAATACCAAACCCTCCACTTGGACTGATGAAGGAT
AATGCAGCAAGCTCATGTAAACAAATCAAGCACGATCACCCTTTATCGCC
AAATGGTCATTACTGGGTCGTTCTTCATGACAATGTTTCAGTATGGTGCG
ACATGGAAACAGATAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041198XLOC_041198Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065761-proteinTCONS_00065761-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065761-exon-scaffold_444-1575043694:86686..87008TCONS_00065761-exon-scaffold_444-1575043694:86686..87008Clytia hemisphaericaexon
TCONS_00065761-exon-scaffold_444-1575043694:84927..85893TCONS_00065761-exon-scaffold_444-1575043694:84927..85893Clytia hemisphaericaexon
TCONS_00065761-exon-scaffold_444-1510915933:86686..87008TCONS_00065761-exon-scaffold_444-1510915933:86686..87008Clytia hemisphaericaexon
TCONS_00065761-exon-scaffold_444-1510915933:84927..85893TCONS_00065761-exon-scaffold_444-1510915933:84927..85893Clytia hemisphaericaexon
TCONS_00065761-exon-scaffold_444-1491911889:86686..87008TCONS_00065761-exon-scaffold_444-1491911889:86686..87008Clytia hemisphaericaexon
TCONS_00065761-exon-scaffold_444-1491911889:84927..85893TCONS_00065761-exon-scaffold_444-1491911889:84927..85893Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_444supercontigscaffold_444:84927..87008 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.196916	0.128016	0.111479	0	0.0448226	0.0349994	0.0844093	0.237012	0.0829865	0.20554	0	0.133863	0.0436543	0.0228681	0.298377	0.577224	0.371907	0.587217	0.224794	0.386119	2.9145	2.29203	0.725234	1.31692	0.95179	2.13882	0.225139	0.144082	0.0728723	0.112194
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000885Fib_collagen_C
IPR014716Fibrinogen_a/b/g_C_1
IPR002181Fibrinogen_a/b/g_C_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005201extracellular matrix structural constituent
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005201 extracellular matrix structural constituent
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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