TCONS_00065657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065657
Unique NameTCONS_00065657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065657 ID=TCONS_00065657|Name=TCONS_00065657|organism=Clytia hemisphaerica|type=transcript|length=1734bp
GGGGATTTAGAAGCAAGGAGTCTACAACTAGCTGAACACCAGGTAGTCCA
GCAATCAAGAGCCCAGAAATCAAAATCACCAAGGAGTTTGCCACCATCCA
ACCGAAAATCGACTCAAAGAAGAAGAGTCGGAGGTAGAACAACAGGACAA
AGGAAGGGAACCAGGAAACCtaaagGTGGTAGAACACGAAATGTGTCTGT
GGAAGATCGATTCTCATCTTGGTTGGTGGCTTTTTCTGTCACAATTCCTG
TCTATTATATCATCTTCACATCATTGACATTCCAAGCACCAGGATCTACA
ACAATGGGAGAGAAATTGATTAATTTAAAGATCACACCATCACCGGCACT
TGAGAAAGTTCGAGTCACTTTTGCGCATACTCATGCCTTAGAAAGGGAAT
TTGGTAATGTGGATGATTTCAACTCTGTCACCAATGACAACATATGTGAC
ATCACACAAGACATTGTGATCGCTATTATAAAAGGCATGAGTTTTACAAT
CCCCAATGTCGATGGCGGTATAACAGAGCTGTTTGATTTAAATACCAAAA
TACGAAAGGTGGTTGCACAAGTCATTGAGCGCGTTCGAAAAGCTGGTGAT
CTCGACATCAACGGTTTCCATTTGTTTGATGGTCACTCCTTCGCTTTGTT
GGATATGCCAGTTAAAATGCttttcaatgtTGTGGTATATTTTCTGCCAA
TCTTTATCACCGCAATCATTACAATCTGTTTCTTGTTATCATTCATTCAA
ATTCTTGGCTTATTCCGACAAAACCTTCGCATCAATCAATTCTTACATTC
CTCTGAACAAATGGTGAGCTCACTCTCCATCTCCGCTCTATCAAACCAAC
TGGCCATTATTGGTCTGTTCTCCTTCCTTGATGGATTTTCATCACCAATG
TTTGATTTTACACTGGAAATCGGGCCGCTCCTCAAACATGCTACTTTAGC
GTCAATCCTTTTGATCGTTTCATCGGTTTTCCGAGTATTAACCGACTATG
TACCGATCGCGAGTGACGAAGCTGATATCATCGGGGATATGATTGATGAC
GATAATGCAGAGGGTCTCGGCGAAGGCGATTGGGGCGATGACGAGGGTGG
AGAAGAGCCTGATCCACCGACTGTTGATACCGAAGTTCCGAAAGGTAGAA
AACCGCCCGGTAAAGGCGGTAGACAACATACTAGACAACAAATAGTTCAA
CACAAAGGAAAGAAGTAATGTTTTGTTTGAACTACCAATCAACTACCTGG
AAATTTTATTGAGTAAAGAACACTTAAAAAAAAGAgattcatagaaaaaa
atacttGAATGACACTAATAACATTTATTACATATAGTAACGCTTAATCT
TTGAAAATAGTTTATTTCGTTTatttcaataaatattttagtagcCAAAG
GTCAGCATTTTGACGCCCTGGATCTTCCTCATCTACATTGAATTTGATAT
CTGATGGTGGTTATTTTCACATTATCTAAATTTCACAGCTTTTTATCTTT
ACATTATCTAAATTTCatagctttttaatttttgacagGACTACAGTTAA
TTATACGATTATATTCAACTctttctaatttcaaacttctataattcgaa
tttttctgtaattcaaactgCATCATTGCTCCTATGAACTGACAAGTCGT
TTAAAAtactctgtaattcgaatccttCCCTATTTTGGAGCAAACTTCTG
GTCCCGTAAAAGATCGAAATAAAGAGAGTCGAAT
Run BLAST on NCBI

transcript from alignment at scaffold_441:43646..47920+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065657 ID=TCONS_00065657|Name=TCONS_00065657|organism=Clytia hemisphaerica|type=transcript|length=4275bp|location=Sequence derived from alignment at scaffold_441:43646..47920+ (Clytia hemisphaerica)
GGGGATTTAGAAGCAAGGAGTCTACAACTAGCTGAACACCAGGTAGTCCA
GCAATCAAGAGCCCAGAAATCAAAATCACCAAGGAGTTTGCCACCATCCA
ACCGAAAATCGACTCAAAGAAGAAGAGTCGGAGGTAGAACAACAGGACAA
AGGAAGGGAACCAGGAAACCtaaaggtatttttttaaacaataattGGAC
ATGAGTTTCCAGTACCTTTTTACAATGAAATAACTGAACTACATGGTTCA
ATTTTGTCTTAGCATTTAaaaggtttttatttttacatgaattttcCCGT
CTcgtatcagacacatgtttcaaaCCAGGCCGGTGTCAtgtgttctggat
gggaaataagtggcttcattttccatcaaaaaacTTCGAATCTAAAATCG
ATTAGTAAACCCCTCACAGATCAGTATCCGATGACATTAAGTGGAAGTAG
TGGTATATAtgttaaattctgaaaatattagAATATCGCAAAattacaat
atattttgacgTTGATTGTACTTACATCTTATACTagatttagaaaatat
ttacttttttaaccTTTAAGGTGGTAGAACACGAAATGTGTCTGTGGAAG
ATCGATTCTCATCTTGGTTGGTGGCTTTTTCTGTCACAATTCCTGTCTAT
TATATCATCTTCACATCATTGACATTCCAAGCACCAGGATCTACAACAAT
GGGAGAGAAATTGATTAATTTAAAGATCACACCATCACCGGCACTTGAGA
AAGTTCGAGTCACTTTTGCGCATACTCATGCCTTAGAAAGGTAAAGTATT
CTTTTTTGGTGCGAAATATTGTTCagtcaaaaatgtaaaaaatataaagg
aaGTGGCTCACAGGCATAAGATCTCCAAGAGGTTATTAGAACTAGGGATT
TAAGCTAATGATGCTAAAATTATTAGGAAGTCTATCCCCTTCTATTTGCG
TTAAACTTTGGATATCGAAAATTGTGGTGGAATGTCATCTGCTACTCCTA
ATTACTTACCGCCTAGACCAGATTATACAATCTAAAATCTACTCACTCGC
TGAATTGTATAGGCTTAACAGGTTTTAATTAATAACCCTTGGACTGATTG
ATAAATTCTCTATCGACTGAAATAACCGGGCATCTCTTTAAGTCGGTGTC
TTTTTTGGGTATCTCCTGTTTGAGACAACTTTTACACGagtatttcaaat
tattttgagaaaaagagaTAGGATGAAATATCCCGATTTTTTTAGTCCGG
CTTTAATTGGATGAGTTGAACAGCTATACTATTTAAGGACAAATTTAGGA
GTAATCTAGGATGAGAGCATTCTTCTGTGCGGATGGATGAAAAATTCCAC
AGTTAATTACTCCTCATCTATAAACGATTCCGTCTCGAAATTATACTCTC
AAATAGTGTACCATGTAAATTATCAGAAAATGTAAGCAAAATGATGAAAG
GAGTAAAAAAGGatgagatattccaaaaatattgataaaaaacgaGTTGT
Ctaaaagaatgttttaaaaactaatagatattattttgaagatgaaaatt
atATGATTGTAATAATAAAGAGtgtatctttcagaaaaaagcaATATATT
CACCGAAAGAGTAGCataggatgaaatatttttttttgtcacccgaaact
gaaaattgtggaattcctcatccttttctactccttaaatttaaatttga
aaatttatggtATCAACAATAGGTTTCCGAAAGGTTTAGATAATAAAACT
GTTTTAAAAAATGGCCAtaataaaaatcagaaaatcttgattttctgGAA
TATTTTATCCCAAACTACTCCGAAATCTATATTATTGGAATCCTGGAGTC
ATTTCTGCAAATAATGTctaaaaattcctaaaattgaagaagatattacg
aaaaagatgattttaaaGATCCCTGAAAAGTCATTCAGGTACATTCTAAA
TAAAACACCGACTTAAAGATTTAGATGCTGACAACGCAGAAACTTCAATT
TGTGTTCACGTGGTACGAGAGAGAGGGGAGAAAATTGTTCCGCACCTTTT
ATCAAAATATGCTGTATAAGCAAAAACATAAGGTTCTAATGTACTTCAGA
AAATAGTAAACTCTGCGTCCGCAGCCCGGAGGCGACCCAAAGACTTTACT
TTCAATATGTCTTTCTAAGGTAGGGCAGGGCGCCTCTCTTTCTCCCTGAA
TTAATTGCTGATTACCAAGCAGAGAGTCATCAAGTAGATTTTTATACTAT
ATATTTAAGTACgcgaaatctttggtatgaccgaggattgaacccacaac
cttgggCACCGTGGGCAACCCTGTACCTTTTTTCATTATTGACGCGATAT
TCAAAATTCATTCAATTCACATGAATCTCACACTACTTTATTTGCCAGGG
AATTTGGTAATGTGGATGATTTCAACTCTGTCACCAATGACAACATATGT
GACATCACACAAGACATTGTGATCGCTATTATAAAAGGCATGAGTTTTAC
AATCCCCAATGTCGATGGCGGTATAACAGAGCTGTTTGATTTAAATACCA
AAATACGAAAGGTGGTTGCACAAGTCATTGAGCGCGTTCGAAAAGCTGGT
GATCTCGACATCAACGGTTTCCATTTGTTTGATGGTCACTCCTTCGCTTT
GTTGGATATGCCAGTTAAAATGCGTATGATTTTTGCTTTATTTATGTTCT
ATAGTGGACTAGCCCATTTGAACTTCAATTTAAGGAATACAGTTGACCCT
CTTTAATTCGGTTTTCAAGATGAATTTGGTTTCGATCGAGAGTTTCTTCT
CGACGGTGGATTTCAATATCATCGAATAaaggagcctatcgaatagtagt
acgtcgaattagagagcatcaactgtatacAATATTCTGATcattcgaac
taattctcagtttCTGTCAATTGACCAATTCTCTGTGATATCAGTATATT
TTGGTTGGTAAAACTATAACAAAATACAGAATAATGGAGACAAATCCCCC
AGTTTGCATGTCTTGCTCACCTTTATTTTTCTGTAATTGGAATCCCTCAT
TAGTTGACaattattataataaaaaaatctttttaaagcgTTGACAACGC
TTTATTTCAATTATCCATATTTCTTATGATTTTGGGATAGATTAAACAGG
CACTTATATTCACTACGAAGATTTTCCTGagattttcttgtatttttatg
atctttttcagttttcaatgtTGTGGTATATTTTCTGCCAATCTTTATCA
CCGCAATCATTACAATCTGTTTCTTGTTATCATTCATTCAAATTCTTGGC
TTATTCCGACAAAACCTTCGCATCAATCAATTCTTACATTCCTCTGAACA
AATGGTGAGCTCACTCTCCATCTCCGCTCTATCAAACCAACTGGCCATTA
TTGGTCTGTTCTCCTTCCTTGATGGATTTTCATCACCAATGTTTGATTTT
ACACTGGAAATCGGGCCGCTCCTCAAACATGCTACTTTAGCGTCAATCCT
TTTGATCGTTTCATCGGTTTTCCGAGTATTAACCGACTATGTACCGATCG
CGAGTGACGAAGCTGATATCATCGGGGATATGATTGATGACGATAATGCA
GAGGGTCTCGGCGAAGGCGATTGGGGCGATGACGAGGGTGGAGAAGAGCC
TGATCCACCGACTGTTGATACCGAAGTTCCGAAAGGTAGAAAACCGCCCG
GTAAAGGCGGTAGACAACATACTAGACAACAAATAGTTCAACACAAAGGA
AAGAAGTAATGTTTTGTTTGAACTACCAATCAACTACCTGGAAATTTTAT
TGAGTAAAGAACACTTAAAAAAAAGAgattcatagaaaaaaatacttGAA
TGACACTAATAACATTTATTACATATAGTAACGCTTAATCTTTGAAAATA
GTTTATTTCGTTTatttcaataaatattttagtagcCAAAGGTCAGCATT
TTGACGCCCTGGATCTTCCTCATCTACATTGAATTTGATATCTGATGGTG
GTTATTTTCACATTATCTAAATTTCACAGCTTTTTATCTTTACATTATCT
AAATTTCatagctttttaatttttgacagGACTACAGTTAATTATACGAT
TATATTCAACTctttctaatttcaaacttctataattcgaatttttctgt
aattcaaactgCATCATTGCTCCTATGAACTGACAAGTCGTTTAAAAtac
tctgtaattcgaatccttCCCTATTTTGGAGCAAACTTCTGGTCCCGTAA
AAGATCGAAATAAAGAGAGTCGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041138XLOC_041138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065657-exon-scaffold_441-1491911889:43646..43820TCONS_00065657-exon-scaffold_441-1491911889:43646..43820Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1510915933:43646..43820TCONS_00065657-exon-scaffold_441-1510915933:43646..43820Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1575043694:43646..43820TCONS_00065657-exon-scaffold_441-1575043694:43646..43820Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1491911889:44216..44435TCONS_00065657-exon-scaffold_441-1491911889:44216..44435Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1510915933:44216..44435TCONS_00065657-exon-scaffold_441-1510915933:44216..44435Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1575043694:44216..44435TCONS_00065657-exon-scaffold_441-1575043694:44216..44435Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1491911889:46044..46318TCONS_00065657-exon-scaffold_441-1491911889:46044..46318Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1510915933:46044..46318TCONS_00065657-exon-scaffold_441-1510915933:46044..46318Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1575043694:46044..46318TCONS_00065657-exon-scaffold_441-1575043694:46044..46318Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1491911889:46857..47920TCONS_00065657-exon-scaffold_441-1491911889:46857..47920Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1510915933:46857..47920TCONS_00065657-exon-scaffold_441-1510915933:46857..47920Clytia hemisphaericaexon
TCONS_00065657-exon-scaffold_441-1575043694:46857..47920TCONS_00065657-exon-scaffold_441-1575043694:46857..47920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_441supercontigscaffold_441:43646..47920 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00253041	0.115671	0	0	0	0.136534	0.660442	0.654862	0.315548	0	0.27034	0.126092	0	3.45018	2.49418	0.0616232	0.698873	2.88616	4.75269	0	0	1.02653	0.198967	0	0.074257	0.0203365	0.0981813	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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