TCONS_00065563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065563
Unique NameTCONS_00065563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065563 ID=TCONS_00065563|Name=TCONS_00065563|organism=Clytia hemisphaerica|type=transcript|length=2913bp
TTTTagataaaagcaaaaaaatagaaTACATACAAAATGAAATAAGTTGG
CAAAAGATGACGGAACATTTTTGTGATATGACTGGTGAAGTTGTGGTTAT
TACATTGTGATGATCTCCCTGGTAGTGCTTCGATTAGAAATTCAATATGC
TGACCAAAATATACAAGACTTCTATTACTCCGCAGAACAATATTTTGAAC
GTCATACTGAGCTGTGTACTGAAACAGAACTGAATAACTCTGGATTACGT
TTGTTATCTGAACAAGTGGATATTCCCGAAGTCTTCAAAGAAATACCTGA
ATTACACCAAGGAgagagaaaatatcaaaatattgttGTGGAAACTTATT
ACCCTAAGCAAGAAGGTGGTATGGAGGGAGCAGAGAGGCGAAGTGATTCA
CTCAGTGAAGGAAAAGAGCTGACCGGTATCAAATATTTCTCTGGTAATCC
ATCTGTTGAACGAACGCAGGGAATATTGCATCTCTATAAAGACAAATATT
TGACGCCATTGGATCCGGATTTTCCGCGCAGTGAGTTGATTTGTATCATT
GCTGTACCTGCCAAATACACGTGTCGTGATCTTCAGGACTTCGTCGCACC
AGCAGGGGAAACCATTCAATACATGAAGATTTTGAGAGATGCGCGACCAA
ATCAGTATATGATTCTCATCAAGTTCCGAGATCAGttgAGCGCAGATAGT
TTTTATCAAGAGTTCGAAGGAAAACCATACAATCTGCTTGAAAACGAGGT
TGCACATCTTGTATACGTGTCGAAAGTTGAAACGATTCCTACATCAGAGg
gtGGTTATATGCCAGTTACCGGTCTTACGGAACTTCCAAATTGTCCAGTT
TGTTTAGAACGAATGGACGAATCTGTGGCCGGCATATTGACTGTTTTGTG
CAATCATTCGTTTCACAACGAATGTCTATCTAAATGGCAAGACGACTGTT
GTCCAGTTTGTCGGTACCGACAGACACCTGAAGAAGAGGTCGATCAAACG
TGTTTTGAATGTGATGCCAAAGAGAGCCTTTGGATATGTTTGATTTGTGG
ATATGTTGGGTGTGGTCGATACCAAGAACAACATGCTTTTCAGCATTACA
AACAGACGGCACATACATTCAGCATGCATCTTGGAAATCAACGTGTTTGG
GATTATGCAGGAGATAACTATGTTCATCGATTATTACAAAGCAAGGGTGA
TGGCAAACTTGTGGCTGTAAACAGTGAAGGAACTGAGatTGACAATGAAA
AGGTGGATTCGTTGACTTTGGAGtaCACCTACCTTTTGACCAACCAACTG
GAATCGCAACGTCAATTCTTTGAGCAGAAAATTGGTTTCCTTGAAAAAGA
GGCTTTTGAAAGGATAACTAGACTAGAAGAAAACGTTCACACCTCAAGGA
TACGCAACGAGAAGACTGAAACAAAGCTGCAATCTGTCGAAAAGGAGAAG
AAGAATTTAGAGAAGAAATACGAAAATGTTGTAGGAAAAGCCACCAAACT
TGGTAAAGAACTAAAAGATGAAAAACAAATGAATGAGTTCTTGAGAGTAA
ATCAGGGTGATTGGTATAAGAAAGTGTCAGATCTGGAGAAGAGGCTGGTG
AACTTGGAAGAGGAGAAAAATAGACAACTTATTGAACTACAAAGTGAGAT
CACTGATCTCATGAAACACCTGGATTTCCAGTCTGCTATCAACAGTTCCG
CTGGATCAGTCAAGGAGGAGATCCAAGGCGGTCATCTATTCACAGAACAA
GGCACACCATCTCCTTCCAAAGGAGGAGCTAGATCGAAAACCAAAGGTCG
CAAAAGGTGATATTGAACGCTTTGGTAACTTAAATTTTGCACTTTAAAGT
AATTGAAGTTATGGCTCAACTTGTTACCAAAAGTATTTAAGCTGCTCTGT
CATTGGTCAATAATGAGTTGACAAGGCATGTCCAGTTACATTGTGATGGT
AAACTCTGGTGATCAAAGTGTATTTGTAAATGATATTCCAAAGACGCACG
CGATACTTGCACACTTAAATAATGAAGCTATGACATTTTACTGAAAAAGG
TTACCCTTTAACAGAGCTAAGCAATAATACataaacttaaaaagttttca
atgaAATGTGTTAATATATCCTGATGAATGAAATTGAAAGCAATAATaca
taaactcaaaaagttttcaatgaAATGAAACGATACAGTATGCCAATTAT
GTCCTGGTGAATGAAATTGAAAGCAATAATacataaactcaaaaagtttt
caatgaAATGAAACGATACAGTATGCCAATATGTCCTTGTGAATGAAATT
GAAAGCAATAATacataaactcaaaaagtatccaataaaatgaaatgata
CAGTATGCCAATATGTCCTGGTGAGTGAAATTGAAAGCAATAATACATAA
ACTTGAGGAGCGCTCAATGAAATGAAATCATACAGTATGCCAATTATGTC
CTGctgaataaaattgaaattgaaatacgTTTACGTTACCTGTTATGTGA
TGTACTGTAAATCGATTTATAACAAGAAAATATTGGACAAGACTATCCAT
TTATTGAGTTACTTCAAAACCACGGTACTTCTGGGCACCTTTTCCAAGGT
AATTAATTTTCCTGATGAGTGAGAATATACCGgttgcgccacaaaaaagt
ttctctctttgaaattgattttctcgaaatctaaaaatgttaaaagaacc
atgcctattccattggaaagaagaaagataaacttaaattttgataggtc
atttattgaattcggttcattaaatcaaaagttatgctcaattgaataaa
aaagttattttcagaaagtgcccgaaaacgttaaaaatcaacctatcaaa
tttttattttaaaactggcAATCACAATAGGCTTAACATGATTaggagca
tttttcagtaact
Run BLAST on NCBI

transcript from alignment at scaffold_440:352858..365887+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065563 ID=TCONS_00065563|Name=TCONS_00065563|organism=Clytia hemisphaerica|type=transcript|length=13030bp|location=Sequence derived from alignment at scaffold_440:352858..365887+ (Clytia hemisphaerica)
TTTTagataaaagcaaaaaaatagaaTACATACAAAATGAAATAAGTTGG
CAAAAGATGACGGAACATTTTTGTGATATGACTGGTGAAGTTGTGGTTAT
TACATTGTGATGATCTCCCTGGTAGTGCTTCGATTAGAAATTCAATATGC
TGACCAAAATATACAAGACTTCTATTACTCCGCAGGTATGTAATACCAGA
AAACTATAGTTCTCGTTGTTACAGAGTATTattcttaattgtttttttgt
tttcaattcttcaaaacaaaagtttttgagtataatattttctttctgGG
TAGATTTTTGACACTTTTACTAATGGTATATAAGGGTGTAGCATGAGGGG
TAGATcatccagctacggtgtgcAAGGTTCTTGAAATGATATTTGATGTC
TTTCTGCTTGatgttcaaaaaataaagagaCGGGATCAAAGGGAAGTGGA
GAAATTCAGCGAAAGGAGTGGCACTCTTCCCTATACGTCGGGTGGACAGC
TAAAGAAGGGAACCTTCGGGTCACCCTCGGCTGTGGTCGCAAGCTTACTA
ACGTGTAGATAACATGGAAATGCTATTGAAAATTTCACGATTCCCTAATA
AAATTCAATCGTATTATTTGAAGCACTCACAGAAAGAATTGGATCGCTAC
AATGATGTTTCTCTCTGAAAAAGTTTCATTAACTTTCACTATTTATTTTC
AGAACAATATTTTGAACGTCATACTGAGCTGTGTACTGAAACAGAACTGA
ATAACTCTGGATTACGTTTGTTATCTGAACAAGTGGATATTCCCGAAGTC
TTCAAAGAAATACCTGAATTACACCAAGGAgagagaaaatatcaaaatat
tgttGTGGAAACTTATTACCCTAAGCAAGAAGGTAAGAAATTCTTCTTTC
AactttaaatttcataaaaaaaggcCTAACTTTATATAGATAGAAAGCAT
ATAGTTTTGGGATTTATAATACTTgaaattatcaattatttgaAGCAAAA
CCCAGGCCACAGAAACTTCTAAAACTGTCAATCTGCGTCAATGGTCTGCA
ATTGCTTCAGAAATTTTAATTCTTACTACCCTGGTTAACTTAAATAAACA
AGTTAATCCCTGTCATAGAGCTTATAAGTTAATGTTTGATGGGCGTACGG
AGAAAAAAATTGCCTATTGAGAAAAGTTCTAAATGAATTCTAGAGGATCC
TATCTTTTTTCCCTCGcaatgggggggggggtattgAGAAACACTTTTTT
TGGAAACGATATGGAAATCTATTACAATTAATTTGGTTTGGTTGATTCAA
CCAATTTTTCAATGGTGCTTCAAAAACTATTTTGtcttttcaaaaagtat
tttgttttgtattttggtGGTCGGATGACACCGAAACGtctttaataaat
ttttgattttatgaaaataaaatgaagtcgcttctgtgtttgaaattttt
attgaaatcatTCAGGAGAATCAACCAATTTGATTTTGTCTTTAATTTAt
aaaccctataaatatttCCTAGTTAAAAGTATAATAGCAACCACAATTGC
TGCAAAGCTTCCTATTACAATCTAAAGAAAATCTCATAATAGTTTTAGCC
TGGATTTTGTCTTTAATTTTATATATATAGCAGGTGGTATGGAGGGAGCA
GAGAGGCGAAGTGATTCACTCAGTGAAGGAAAAGAGCTGACCGGTATCAA
ATATTTCTCTGGTAATCCATCTGTTGAACGAACGCAGGGAATATTGCATC
TCTATAAAGACAAGTAAGagatatttttttgataactttatctattcctg
catcacattgagtataaatataattcttgattaaagtgactttagaacca
ttgtattttataatgtgatcaaaatttttattaaaaagtgtcaattctaa
tgataaaatgacaaaaaaaagtgtcattatttttctagctctataagcta
tctctacgaattttttgaggctaagatgactgtcaacttatatcctttta
tacaataagcatcacttgcagtatgatcaataatttttggggaatttgtt
tgacaatcatctatatattaatagccgtagtctgtatgtcagtttgtttt
ttgttggtttgtttgttttttgtgtgtcactttcgttttcgcaagcaatg
tttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttctttttttttctttct
tttcttttgttttatgttttcgaatgtaattaacgaccctatttgatttg
agacattcgaattcttttcaaaacaaaagaaatctttaaaacataatcta
ttaaagaaaagaacaaatttgaaagaaaacacaagaatcacgtaacaagt
ttgttagaacaacagcaacattataAATATATATATTCAAAAGGcagtaa
aaactagaattctttcttcgtaaaatgggacctttaaacatgtatgtcga
taattattttgctgtaaatctaagtcattgttgaatttgaaaaattattg
aagttatgacgaagttattttataaaaagcaacataaaattgcgctatca
cgcttttttgtctgcgtgtcctagctgggactatggttgcgagctgactt
tcggccctgcccctcggacccttagcagaacaaagaggagaagaaacaag
ggaatttgtgtgaattttaattcactttttggaactaatttgaccaaatt
tctattttcctgggggcaaaaagttgaaattttcctatttttccaatcct
tagtgggactgaagtttgattttccgatttttcaaactgccatgtttcaa
aaaaggcacccttaaggccggcacatacccatacccataNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGTCTATTAcgtatttcactccgcttatcttgacatcaa
agttttcctaaacatcaagaactacggcaaatataacgcgagcgtagcga
gaaaaaaaatctaattacagagccgtctcggacgtcgctggtcgccggta
tggtgttatttgggaatgacgccctttctgttttctgatcatttttacca
caaaaatctttttcaaaatatggttaaaagatacgtcagccgggagggat
agagtcaaactttgaagataattattccctttaattttgatttcatcgtg
tttaagccaccttcccaacatatcaaaagactttaaatgcgttcagcaaa
cagctaaaccggcgtgcgacgccgggtaccggctagttgtatttaaagat
tttgtcaatatttttacaagaacgtgtcatgttgtcagcattatgacaat
gacataacagtactaagtattttggctttgctagccagcaccttaccatt
ttcatgatcttaaagtcaataatatgtttggtactggctaatttgaaatt
tgtacttttgggctacattaatttaaattagaaaatttttggtcgccgta
aagttttacgaactccccaactcgaaactagcaactccccaactccccaa
ctcaccaactcatcaactagaacattacctagactcGTTAATTTAGCAGC
CAACAAATATTAACGAGCGGCCAGGACCTATCTAAGGAGCGGCCAGTCAC
ATTTCTTAGCAATACCTTTATAACTTTACTTTTTATTCCAATTTTTATGT
ATATAGTATGATTACAAGTTAAAAGAagagtttaaagaaaaatgtgttat
gtttttattttagtatgattacaatatagtcaatTCTCCcaatttcgatt
ttcaagggatcTTTTTCCGTAATTGCAATTTTTTCGAATATATTCTATTA
ACGGAGAGGACCTGAATGATCCAATGCGAATTGGAGAAAGACTCAGACAA
TAGTGCTGGCTCGAATGAAAAAGAGTTCACTGTCTGTACATGATACGACG
ATTTTTTTGTTGACAGATATTTGACGCCATTGGATCCGGATTTTCCGCGC
AGTGAGTTGATTTGTATCATTGCTGTACCTGCCAAATACACGTGTCGTGA
TCTTCAGGACTTCGTCGCACCAGCAGGGTAATTATTTTAAGTGGAAACTC
TTTTAACTTTGTATTGTTCCGCTTACGCTGGATAAATTGCTGACCATTAA
GGAGAGAAATATCAATTACCTTAATTATCTTTGGTTAGCCAGAGATCAAA
CCTACCACCCTGTACCACTGATCTCTAATTGCTTGACTGGATCTGGCTAC
CCGTATAATGGAAGCGTGTCCAGATTAAGAGCTGActagtccgccatctt
gttttcaattctggtcgTTAACAGCCTGgctcaaatgttttgaaattcga
acgttcgaaaatctaagttaaaaaagaaaacaacatgGGAAATCTGTGAG
CAGTTAGCCTATCTAGTGTGTGAAATGATATGTTAATGATAATCTCTGCC
TTGTACACCATCGTCGAATAATCTTCCATGAAAGTACGTCTTCTgtcgaa
aatatattttatagGGAAACCATTCAATACATGAAGATTTTGAGAGATGC
GCGACCAAATCAGTATATGATTCTCATCAAGTTCCGAGATCAGGTAAAAA
GTATTTCGAAGTCTTCAAGCGACCCACACTTAGCTTTTTATGAAGCATAT
TTTGAGGGATTTTGGGGTTGAGAATGGGAAGATGAATTTCAAGATGACTC
TAGAATGTCTTAGATGACACTTGACTTCTAGATCAGAAACATGTCTATAA
AATTGACATTCGAAAATCATGTCAAATATTTCGTGGTTCAGACTGCACTT
TAGAAAATCTCACAATTTTGAAATTGtgacaaaaaatgtcataaaagTCA
TTGAAACGGTAGTGAATTAATATCGATTATGATATAAACTAAAAGTAAAG
CTGCTTATTTTCTAGGGCGTTTTTTAACTAGTATATTCACTTTCCACTTC
CCTGTTCGAATGTTTGTTGTATGAATGCTTGTAAGTTTTTTCATTTCCAC
AAAACCTTTATTTATCGATAACAAACAAATATTGCGACTAATATTTCCAC
GAAATATTTCGTtctatttaaaaagaaatttcctctttttctattttcag
ttgAGCGCAGATAGTTTTTATCAAGAGTTCGAAGGAAAACCATACAATCT
GCTTGAAAACGAGGTTTGATAGAAACAAAGCTTCTTTGATTAATTCGCTG
ATTCTGTCTTCAAAATCTCATTTCACGAGTTTTGATTATAATAAGATTCT
GATATTATTTTCAGATATATGAAAATTTTCGCCGAGACTGTTTTAGTTCA
ACAATTCTTTGACTCAAATTAAATCATACAAATTTATATGTTTATCACTT
TTTTTTAGGTTGCACATCTTGTATACGTGTCGAAAGTTGAAACGATTCCT
ACATCAGAGGTACTTATAGAATTTACATTTTACTAAAATCTAGTGAAATT
TTGATACTTTATTCTAATTTATGGGGATAATGATGTCGATTGAAAAGCGA
CCGTTGTGCAAaagtagagcatccggctacgttGCGTATGGTTATGGGTT
CAATcctcagccgggtcataccaaataCTTTAATACTTTGTAACTATCTG
TTTAATGCTCAGCAAGTAAAGAGAAAGATCAAgtttcgggtcgcctccga
cctCGGTCGTATCCAGCTTATCACCACAAACCTACAGTTGatcttttgaa
atgaaattccaaaatgaCTTCTTattatcattaatttcagggtGGTTATA
TGCCAGTTACCGGTCTTACGGAACTTCCAAATTGTCCAGTTTGTTTAGAA
CGAATGGTAAGAAGAGCCTTTGATATGTCTAACATTTGTCAGACTAATTT
AGTAGTTAACAGTAAAAACTATCGACCCCTTGACTTTTAACCTATATATA
GTGTCAGCTTAGAAAAAGCACTTATAGTAATGGTATAATGGTACAGCGAA
ACCATTTTGTATCTGTTTTGGGGTCGGTCCGANCCGGTCTTACTGAACTT
CCAAATTGTCCAGTTTGTTTAGAACGAATGGTAAGAAGAGCATTTGATAT
GTCTAACATTTGTCAGAATAATTTAGTAGTTAACAGTAGAAACTATCGAC
CCTTTGACTTTTAACCTACATATAGTGTCAGCTTTTAAAAAGCACTTATA
GTAATGGTATAATGGTACAGCGAAACCATTTTGTATCTGTTTTGAGGTTG
GTCCGAATAGTAATGGTATAATGGTACAGCGAAACCATTTTGTATCTGTT
TTGAGGTCGGTCCGAATCTACAAAAGAAAAGGGTTTATGtgaaagttaaa
aaattctTGCTAATAATGTTTTCTCATTGCCGTAGAGACATTTGCAAGCT
TTTCTAGAGTTTCAGTTTCTAGAGATGAGCTTTGAACCACGATATTCTAA
ATGACTTTCGAGAAACATGCTTGAACTCACGTTTGTAATGCCCGAGGTcg
tcatttttttctagacCAAATCGATTTTCCCTACATTCGATTCCCAATGA
TAGTAACTATTTTAGTTTCTTACAATCATTGTATTACCTTCTTCACTCAT
TTTATTCATAGGACGAATCTGTGGCCGGCATATTGACTGTTTTGTGCAAT
CATTCGTTTCACAACGAATGTCTATCTAAATGGCAAGACGACTGGTAAAC
CCATGTTTCTTTCTAAACACGTTATTCCTTTATATCTTTATAACAAGATT
GGAAGCGCCAAACCATAATAAAAACTAAGAATTTAGAGAAGCAATGGTCG
AATGGACTAATGTGTTATGTTATGTTAGTTCAAACATCTTTAACTTGTCT
TTGTTTCTTTCCAGTTGTCCAGTTTGTCGGTACCGACAGACACCTGAAGA
AGAGGTCGATCAAACGTGTTTTGAATGTGATGCCAAAGAGGTTGGTAAAC
TGTTTTCTGTTCCACTTTTTACACATTTCTCGCTTAGCCAAatttataca
ccttttcaaccgtagctgccaattgccgcgcgggcatatCCCCCcataaa
ctcgatccaatccttttttgacacctttttctattgtctataggtgcaaa
aaaaagactgggacggttttagggtggtaaaaaatgccGGCGCGGCAATT
GgaggctacggtcgaaaaggtgtatttggtTAAACTCGAGGATATTCACC
TCTCAGCCTGATATCAGACGAGGGAGGGGTCTGAGTTCCAGGTTATCCCA
ATAATATACTTTGACGTCTTTCGGCCCTGGTTAACTTTAATCTAACTCTT
CCTTTAATGCAGTTTTTGGTCTTCGAGGGTTAGGGGGTAAGTGCATTAAG
CAGCCTTAAGAGATGGTTAAGGATTAGAAGTATAGTAAACCAAAGGTCGC
GTCCCTAATCCTTCTACTTTCGAAATGATTTTGAAGTTTAGCTTAAAAAG
CCCAGACAAAATTTTGTAGTTTATGACAGAGATGTGCAAACCACTaagat
ttaaaaacaatttcttgCTTCTTGTAGAGCCTTTGGATATGTTTGATTTG
TGGATATGTTGGGTGTGGTCGATACCAAGAACAACATGCTTTTCAGTAag
actttttttattcattttaacTCTGCTTTGATACTCGTTAGCCTGATTGT
AAGCTAACTTTTTGCTTGTGATCATGATACAAGAAATATCGAAACGTCaa
gaatgaacaaaattttgtttttcgtctttacttttgtttttgagaaTAAT
CTGGcccagaagaaaattttttcccaaCACCTTTCCAAAATTCATCCAAC
ATTCGTCCAACATTTCAATTGctatgttggatgaaatgttggaatcgttt
acctcgGCCTTTACTCGTTAGCCGTGTAAAAATAACTTGAAGACGGGGGC
TCTTCCGAAAATGGATCTTATTTCGCAGTGTAAAAATAATTCTTGCAAAA
TTAGTTTTTAGTCGCAATCTGAACCTTGTGTTTTACTCTCCATTAGGATA
GAGCTCATATATTTTGTTCCCTTTGCCAACACTGACNGATAGAGCTCATA
TTTTGTTTCTCTTGCTGACGCTGACAGTGCACTTTTAGAGTTCTGAAAGA
TTCTTAAGAGCTGCAACATTAGGTTGGTTGGTCTAAATACAATAAGAATA
CCAAACAAACCATAATAAACCATAATACCAAACAAATAATAATCTAAGAA
TTTAAGATCGTGTGTCTAACGGTTAGTCTTTATACTACAGTTATTGACGA
TGTCATTTTATCAAATACCTATTTTATTTTGTCGTTTTTCCCAGGCATTA
CAAACAGACGGCACATACATTCAGCATGCATCTTGGAAATCAACGTGTTT
GGGATTATGCAGGAGGTatacacacaacgttgtttcaacgtcaatCTCAC
GTTCTTAACAAATTCTTTAACATTCaatattcaaaatcaaaatcttaccT
ATCTACGTCGCTAGGGAAAAGTTCTCTATCTTGGACACTCTTACATTGAG
ATTAGAGTtagttttttggtattttattcCTTGTGCATATTCACTCGGAT
CAAGCGTCTTTCGATTTCTTAATGGCATAATAAACCTACACTTGTGAGTG
TTGGCAGTTTTTCTTATTCTTTCTGACCTTCTTTAATGTTAGATAACTAT
GTTCATCGATTATTACAAAGCAAGGGTGATGGCAAACTTGTGGCTGTAAA
CAGTGAAGGAACTGAGGTATGCTTTATTTCAAGTTCATGTTGAAATAATT
ATTGATCGCTTTATACTTTAGAAAAGTATACTTCGTTAGTTAAATCTTTA
GACGGGTATTTGACCTTCGATATTAGTCAAATTTATCaggggttttgctt
tgtttttggtaggctggcgaatgaaaaattaactctggcGATTTCTAGAC
TCTAGGCCGGCGAATTCTAGATTCTAGGCCAGCGAATTCTTAGCAAGGgc
agtgtattgattagcgtaaaTATGCACTTGGTGGCGAATCGAACCTTTCG
AACCGCGAATTGTTATTTCTTTTCGTGCCTTAGACCGGCGAAATTCGCCG
TTCGCCGGGCCTAAAAAAGACCCCTAATTATTAAGAAGCACCTGACCTAT
TCACCCATAAAACGCAAGGAGACAGGGTTAGACTTCAGCAGGTAAAGTTG
ACAACAAATGGCTTGTTTTCGTTGCATTGTTTTTCTCATGGACAATTTTG
TCGTCATTTTCTTCATGGCAAACTCGAAGTCTTTGTGGTGTTTAGGTTAA
CACTCTTTTTgtaatttatatatatattatatattatatttatagtattt
attatcataaaattgacttttctttattttagatTGACAATGAAAAGGTG
GATTCGTTGACTTTGGAGGTAAATTCACATGCTTGCTCTCACTGAAAGCT
ATGCACTAGATCGTTTTTTTTTACACTGcctctattttatttttgagcaa
cttttttaaagaaattattacatTAACGGCAAAACCAACCAGTCATTGTG
AACCATGATAGCATACAAAATGTTTCGTCCAGAAAGATGGAAATGCATAA
ACAGTGCCATACACCATATTCAACCCTAACACTACTAGGAGATTTTGACC
TATTTTACCAGAGCTACTAGTATCTGTATCTTGTATGCAAGTATCTGCAT
GTCATTAAAAGGACTACAGATATTGCCATTCAGCCCTTGTAAACTCGAAA
CCAATCCCTTTTCTGCAGCGTTTAGTGTAAGGAATGGTTGATTTgtcatt
ttattcttataaacgAAATAAACAATTCAAATTAAGTCTACACAAATCTA
AAACATCAACGTGTTTAGTGTCAAGAAAAGAATAACAAACAACCTGTctt
tgtctttctttttttagtaCACCTACCTTTTGACCAACCAACTGGAATCG
CAACGTCAATTCTTTGAGCAGAAAATTGGTTTCCTTGAAAAAGAGGCTTT
TGAAAGGGTAAAGAAGTTTATCGCAAATAATACTTCACACAAACTTTCAC
AAAGTCTAACTTTCTTTTCCGTGCGTGTATCTTCAAAAGTAGCCGAAAAA
GTTAGGTTCTTTGAACTAAAAAGCTTTCTTCTGTCACGTGTTTTTCGCAT
AAATGCTTATGCACCGGGTGaatcgataatattgaaattgACCTATTATG
ATGAAGAATTCtgaaggattttcaaaaatataattatcCTTTTTATTTTG
GGAAGTAAAAACAATAATCTTACATTTTCTTAACGTTTCTCGCTCTAGAT
AACTAGACTAGAAGAAAACGTTCACACCTCAAGGATACGCAACGAGAAGA
CTGAAACAAAGCTGCAATCTGTCGAAAAGGAGAAGAAGAATTTAGAGAAG
AAATACGAAAATGTTGTAGGAAAAGCCACCAAACTTGGTAAAGAACTAAA
AGATGAAAAACAAATGAATGAGTTCTTGAGAGTAAATCAGGTAACAAATT
AGTTTAACAGTACGGCAGTACGATGCCCTATATTTAAGGACCCTATATTT
TAGGGACTTTTTTTTTCGAGAGAAAAGAAGTAATATATACTCATTCAAAA
GATAATTTAATGCATTGATGTAAGCTTTGAAGAATACTCtttaaaatgaa
gatgaaaaagtgaaGATTTTTAGAATTAAGTTAAATTAatacttttctaa
aaatatttttgattaaaagttACAACCCTCCACAAAGGGCGACAAAAGGA
ATGAATCGAAATGGACCTTTTTTAAAGGGGAAaatctaccgggtgcacca
aaaataAAGTACAGGTTTGTCGAGGTATTTacacgataaaaaaagaatga
acaaaaaatttaaatcctgaagctcacattATCTcaacaaacctgtatac
tttttttggtgcaTTTAGTAGAGTGAACTAATTTCAGATCTTCACTCTTT
TTCTTACTCGCGCAGGGTGATTGGTATAAGAAAGTGTCAGATCTGGAGAA
GAGGCTGGTGAACTTGGAAGAGGAGAAAAATAGACAACTTATTGAACTAC
AAAGTGAGATCACTGATCTCATGAAACACCTGGATTTCCAGTCTGCTATC
AACAGTTCCGCTGGATCAGTCAAGGAGGTAACATTATATGTAACTTTTAC
TATCATTGAATAAATATAATGATAAGCTATTTGGTTTTGATTATTTGCAT
TCTGGTAAACTCGGACAGTCAAAATCCTGTATACTCCATTaaatgataaa
aatgagaaagctTCATTGGCTGTTCCAAAATGTTTGCATAaaagggggtg
gacgaactttttcaagtcaaaacaaatttcttggaaatgtaTGGATACCc
gtgaaaaatggcaaaatttgcaaaaaagaccctggaaaaaattattttcg
tgttttagagtgagggtggacgaattAATATCCGTCGTTTACCCCTGGAA
GTTTAAGAATAGTTGGAAAAATGAGCCTACTCCCTGTATggttataaaat
ggaatggcccaatgatCCTCATAACTCAAGGTCGGTGAAAAGCTAACAGT
TTTTAATGGAgcattttcttcataaaattcaCAGTGtttaattatcattt
ttctgATTCAATTACTTAATTTTAAATTCAACAGGAGATCCAAGGCGGTC
ATCTATTCACAGAACAAGGCACACCATCTCCTTCCAAAGGAGGAGCTAGA
TCGAAAACCAAAGGTCGCAAAAGGTGATATTGAACGCTTTGGTAACTTAA
ATTTTGCACTTTAAAGTAATTGAAGTTATGGCTCAACTTGTTACCAAAAG
TATTTAAGCTGCTCTGTCATTGGTCAATAATGAGTTGACAAGGCATGTCC
AGTTACATTGTGATGGTAAACTCTGGTGATCAAAGTGTATTTGTAAATGA
TATTCCAAAGACGCACGCGATACTTGCACACTTAAATAATGAAGCTATGA
CATTTTACTGAAAAAGGTTACCCTTTAACAGAGCTAAGCAATAATACata
aacttaaaaagttttcaatgaAATGTGTTAATATATCCTGATGAATGAAA
TTGAAAGCAATAATacataaactcaaaaagttttcaatgaAATGAAACGA
TACAGTATGCCAATTATGTCCTGGTGAATGAAATTGAAAGCAATAATaca
taaactcaaaaagttttcaatgaAATGAAACGATACAGTATGCCAATATG
TCCTTGTGAATGAAATTGAAAGCAATAATacataaactcaaaaagtatcc
aataaaatgaaatgataCAGTATGCCAATATGTCCTGGTGAGTGAAATTG
AAAGCAATAATACATAAACTTGAGGAGCGCTCAATGAAATGAAATCATAC
AGTATGCCAATTATGTCCTGctgaataaaattgaaattgaaatacgTTTA
CGTTACCTGTTATGTGATGTACTGTAAATCGATTTATAACAAGAAAATAT
TGGACAAGACTATCCATTTATTGAGTTACTTCAAAACCACGGTACTTCTG
GGCACCTTTTCCAAGGTAATTAATTTTCCTGATGAGTGAGAATATACCGg
ttgcgccacaaaaaagtttctctctttgaaattgattttctcgaaatcta
aaaatgttaaaagaaccatgcctattccattggaaagaagaaagataaac
ttaaattttgataggtcatttattgaattcggttcattaaatcaaaagtt
atgctcaattgaataaaaaagttattttcagaaagtgcccgaaaacgtta
aaaatcaacctatcaaatttttattttaaaactggcAATCACAATAGGCT
TAACATGATTaggagcatttttcagtaact
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041088XLOC_041088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065563-exon-scaffold_440-1491911889:352858..353042TCONS_00065563-exon-scaffold_440-1491911889:352858..353042Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:352858..353042TCONS_00065563-exon-scaffold_440-1510915933:352858..353042Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:352858..353042TCONS_00065563-exon-scaffold_440-1575043694:352858..353042Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:353560..353739TCONS_00065563-exon-scaffold_440-1491911889:353560..353739Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:353560..353739TCONS_00065563-exon-scaffold_440-1510915933:353560..353739Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:353560..353739TCONS_00065563-exon-scaffold_440-1575043694:353560..353739Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:354491..354620TCONS_00065563-exon-scaffold_440-1491911889:354491..354620Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:354491..354620TCONS_00065563-exon-scaffold_440-1510915933:354491..354620Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:354491..354620TCONS_00065563-exon-scaffold_440-1575043694:354491..354620Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:357124..357234TCONS_00065563-exon-scaffold_440-1491911889:357124..357234Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:357124..357234TCONS_00065563-exon-scaffold_440-1510915933:357124..357234Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:357124..357234TCONS_00065563-exon-scaffold_440-1575043694:357124..357234Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:357672..357750TCONS_00065563-exon-scaffold_440-1491911889:357672..357750Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:357672..357750TCONS_00065563-exon-scaffold_440-1510915933:357672..357750Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:357672..357750TCONS_00065563-exon-scaffold_440-1575043694:357672..357750Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:358258..358320TCONS_00065563-exon-scaffold_440-1491911889:358258..358320Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:358258..358320TCONS_00065563-exon-scaffold_440-1510915933:358258..358320Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:358258..358320TCONS_00065563-exon-scaffold_440-1575043694:358258..358320Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:358516..358566TCONS_00065563-exon-scaffold_440-1491911889:358516..358566Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:358516..358566TCONS_00065563-exon-scaffold_440-1510915933:358516..358566Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:358516..358566TCONS_00065563-exon-scaffold_440-1575043694:358516..358566Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:358898..358963TCONS_00065563-exon-scaffold_440-1491911889:358898..358963Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:358898..358963TCONS_00065563-exon-scaffold_440-1510915933:358898..358963Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:358898..358963TCONS_00065563-exon-scaffold_440-1575043694:358898..358963Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:359719..359801TCONS_00065563-exon-scaffold_440-1491911889:359719..359801Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:359719..359801TCONS_00065563-exon-scaffold_440-1510915933:359719..359801Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:359719..359801TCONS_00065563-exon-scaffold_440-1575043694:359719..359801Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:359972..360047TCONS_00065563-exon-scaffold_440-1491911889:359972..360047Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:359972..360047TCONS_00065563-exon-scaffold_440-1510915933:359972..360047Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:359972..360047TCONS_00065563-exon-scaffold_440-1575043694:359972..360047Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:360635..360702TCONS_00065563-exon-scaffold_440-1491911889:360635..360702Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:360635..360702TCONS_00065563-exon-scaffold_440-1510915933:360635..360702Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:360635..360702TCONS_00065563-exon-scaffold_440-1575043694:360635..360702Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:361402..361472TCONS_00065563-exon-scaffold_440-1491911889:361402..361472Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:361402..361472TCONS_00065563-exon-scaffold_440-1510915933:361402..361472Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:361402..361472TCONS_00065563-exon-scaffold_440-1575043694:361402..361472Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:361750..361823TCONS_00065563-exon-scaffold_440-1491911889:361750..361823Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:361750..361823TCONS_00065563-exon-scaffold_440-1510915933:361750..361823Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:361750..361823TCONS_00065563-exon-scaffold_440-1575043694:361750..361823Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:362440..362475TCONS_00065563-exon-scaffold_440-1491911889:362440..362475Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:362440..362475TCONS_00065563-exon-scaffold_440-1510915933:362440..362475Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:362440..362475TCONS_00065563-exon-scaffold_440-1575043694:362440..362475Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:362975..363064TCONS_00065563-exon-scaffold_440-1491911889:362975..363064Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:362975..363064TCONS_00065563-exon-scaffold_440-1510915933:362975..363064Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:362975..363064TCONS_00065563-exon-scaffold_440-1575043694:362975..363064Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:363356..363547TCONS_00065563-exon-scaffold_440-1491911889:363356..363547Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:363356..363547TCONS_00065563-exon-scaffold_440-1510915933:363356..363547Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:363356..363547TCONS_00065563-exon-scaffold_440-1575043694:363356..363547Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:364023..364184TCONS_00065563-exon-scaffold_440-1491911889:364023..364184Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:364023..364184TCONS_00065563-exon-scaffold_440-1510915933:364023..364184Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:364023..364184TCONS_00065563-exon-scaffold_440-1575043694:364023..364184Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1491911889:364692..365887TCONS_00065563-exon-scaffold_440-1491911889:364692..365887Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1510915933:364692..365887TCONS_00065563-exon-scaffold_440-1510915933:364692..365887Clytia hemisphaericaexon
TCONS_00065563-exon-scaffold_440-1575043694:364692..365887TCONS_00065563-exon-scaffold_440-1575043694:364692..365887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:352858..365887 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.8155	13.8562	13.2454	12.974	13.5102	10.0774	10.1576	10.5859	13.5276	13.6939	7.46612	13.404	12.6473	12.0741	8.75914	9.74441	17.4651	15.1717	10.2953	12.4685	14.0018	13.4584	12.5735	12.3036	12.9794	10.9151	8.5815	6.67343	10.6134	11.8229
Blast
[Close]
BLAST of TCONS_00065563 vs. Swiss-Prot (Human)
Match: BRAP (BRCA1-associated protein OS=Homo sapiens GN=BRAP PE=1 SV=2)

HSP 1 Score: 453.366 bits (1165), Expect = 6.139e-147
Identity = 248/564 (43.97%), Postives = 340/564 (60.28%), Query Frame = 2 
Query:  113 ISLVVLRLEIQYADQNIQDFYYSAEQYFERHTELCTETELNNSGLRLLSEQVDIPEVFKEIPELHQGERKYQNIVVETYYP------------KQEGGMEGAERRSDSLSE---------GKELTG-IKYFSGNPSVERTQGILHLYKDKYLTPLDPDFPRSELICIIAVPAKYTCRDLQDFVAPAGETIQYMKILRDARPNQYMILIKFRDQLSADSFYQEFEGKPYNLLENEVAHLVYVSKVETIPTSEGGYMPVTGLTELPNCPVCLERMDESVAGILTVLCNHSFHNECLSKWQDDCCPVCRYRQTPEEEVDQTCFECDAKESLWICLICGYVGCGRYQEQHAFQHYKQTAHTFSMHLGNQRVWDYAGDNYVHRLLQSKGDGKLVAVNSEGTEIDNEKVDSLTLEYTYLLTNQLESQRQFFEQKIGFLEKEAFERITRLEENVHTSRIRNEKTETKLQSVXXXXXXXXXXXXXVVGKATKLGKELKDEKQMNEFLRVNQGDWYKKVSDLEKRLVNLEEEKNRQLIELQSEITDLMKHLDFQSAINSSAGSVKEEIQGGHL 1738
            +SLVV+RLE+         F +SA    E   E   +T L ++   L  +    P     I   H G R+  ++++ET               K       A+R  D   E          K+L   I +FSGNPSVE   GI+HLYK   +T L  D  RS ++CI+ VPA  T  DL  FVAP  E I+ MKI+RD+ PNQYM+LIKFR Q  ADSFY    G+ +N +E++V  LVYV + E + + +G  +PV  LTELP C VCLERMDESV GILT LCNHSFH++CL +W D  CPVCRY QTPE   +  CFEC  +E+LWICLICG++GCGRY  +HA++H+++T HT++M L N RVWDYAGDNYVHRL+ SK DGK+V    EG     EK+D+L LEY+YLLT+QLESQR ++E KI  +EK+  E I  ++     +  + +  E KL  + KEK+++E+K   +  K  KL  ELK+E++MN+ LR NQ     K+ + E+ L    ++K+ Q+ E+Q ++ D+M +L+ Q  IN      ++EIQ G +
Sbjct:    3 VSLVVIRLELAEHSPVPAGFGFSA-AAGEMSDEEIKKTTLASAVACLEGKS---PGEKVAIIHQHLGRREMTDVIIETMKSNPDELKTTVEERKSSEASPTAQRSKDHSKECINAAPDSPSKQLPDQISFFSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPAAMTSHDLMKFVAPFNEVIEQMKIIRDSTPNQYMVLIKFRAQADADSFYMTCNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVMDLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFECGVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDGKIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKETIEKCDNLEHKLNDLLKEKQSVERKCTQLNTKVAKLTNELKEEQEMNKCLRANQVLLQNKLKEEERVLKETCDQKDLQITEIQEQLRDVMFYLETQQKINHLPAETRQEIQEGQI 562
The following BLAST results are available for this feature:
BLAST of TCONS_00065563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAP6.139e-14743.97BRCA1-associated protein OS=Homo sapiens GN=BRAP P... [more]
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